Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

23032542 .. 23034564

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1139900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGTCCTCCGTGTCTACCTCCCACCACGTCCTCTCCTCTCTCTCCTCGCAGAATACCAACAGCCGCGACAATGTGAGGACTCAGCTCTCTTCCTCCCTTTGGGGCTCGCCGATAAGCATAAGCAGCATGTTCTCCTCCAACCCCACCAGCTCCCTCCAATTCAACACGCGGAGGCGCCTCAGCGTCACAGCCATGGCTCCACCGAAAGCCAAGCCCGGCGGAAAAGCCAAAAAGGTGATTGGAATGATAAAGCTGGCGTTGGAGGCCGGGAAGGCGACTCCGGCTCCGCCGGTCGGCCCGGCGCTGGGTTCGAAGGGTGTAAATATCATGGCTTTTTGTAAGGATTACAATGCCAGGACGGCGGACAAGCCCGGCTATGTCATTCCAGTTGAAATCACCGTCTACGATGATAAGAGTTTTACTTTCGTTCTGAAGACCCCACCGGCTTCGGTTTTGCTTCTTAAGGCTGCAGGAGCGGAGAAAGGTTCAAAAGACCCAAAGATGGAGAAAGTGGGAAAGGTCACCATCGATCAGTTGCGTACAATTGCGCAAGAAAAGCTGCCGGACTTGAACTGCTCGACAATAGAATCAGCAATGCGAATCATAGCAGGGACTGCAGCTAATATGGGGATCGATGTCGACCCTCCTGTTCTAGAACCCAAAAAGAAGGAAGCTCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

229

Amino Acids

24.14

Weight (kDa)

9.77

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	84 - 141	9e-28	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	146 - 214	2.3e-27	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	552
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	479
AccI	GTMKAC	3 cut(s)	17, 405, 642
AccII	CGCG	2 cut(s)	69, 172
AciI	CCGC	6 cut(s)	67, 172, 222, 290, 365, 479
AclWI	GGATC	1 cut(s)	641
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	2 cut(s)	5, 178
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	5 cut(s)	102, 296, 307, 308, 505
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	166, 395, 492, 574
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	6 cut(s)	88, 153, 256, 562, 623, 677
AluI	AGCT	6 cut(s)	88, 153, 256, 562, 623, 677
AlwI	GGATC	1 cut(s)	641
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	267, 298
ApeKI	GCWGC	4 cut(s)	126, 470, 562, 620
AspLEI	GCGC	3 cut(s)	180, 307, 553
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	4 cut(s)	219, 271, 302, 375
AsuHPI	GGTGA	3 cut(s)	250, 391, 517
AsuII	TTCGAA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	443
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	4 cut(s)	138, 457, 549, 632
BccI	CCATC	2 cut(s)	499, 536
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	4 cut(s)	219, 271, 302, 375
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	2 cut(s)	471, 618
BfoI	RGCGCY	2 cut(s)	181, 308
BfrI	CTTAAG	1 cut(s)	464
BglI	GCCNNNNNGGC	2 cut(s)	275, 362
BisI	GCNGC	5 cut(s)	67, 127, 471, 563, 621
BlsI	GCNGC	5 cut(s)	68, 128, 472, 564, 622
Bme1390I	CCNGG	5 cut(s)	219, 271, 302, 358, 375
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	3 cut(s)	179, 201, 288
BmrFI	CCNGG	5 cut(s)	219, 271, 302, 358, 375
BpiI	GAAGAC	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	314
BpuMI	CCSGG	4 cut(s)	219, 271, 302, 375
Bsa29I	ATCGAT	2 cut(s)	531, 636
BsaHI	GRCGYC	2 cut(s)	5, 178
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 271, 301
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 296, 307, 308, 505
Bse118I	RCCGGY	2 cut(s)	292, 445
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	358
BseCI	ATCGAT	2 cut(s)	531, 636
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	5 cut(s)	102, 296, 307, 308, 505
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	98, 196
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	3 cut(s)	28, 37, 127
BseXI	GCAGC	4 cut(s)	138, 457, 549, 632
BseYI	CCCAGC	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	69, 172
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	269, 300
BshNI	GGYRCC	1 cut(s)	177
BshVI	ATCGAT	2 cut(s)	531, 636
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	8 cut(s)	219, 270, 284, 293, 302, 375, 446, 566
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	5 cut(s)	102, 296, 307, 308, 505
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	269, 300
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	532, 633
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	6 cut(s)	67, 172, 222, 290, 365, 479
BspANI	GGCC	2 cut(s)	269, 300
BspCNI	CTCAG	2 cut(s)	97, 195
BspDI	ATCGAT	2 cut(s)	531, 636
BspFNI	CGCG	2 cut(s)	69, 172
BspLI	GGNNCC	3 cut(s)	179, 201, 288
BspMAI	CTGCAG	2 cut(s)	475, 622
BspPI	GGATC	1 cut(s)	641
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	2 cut(s)	292, 445
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	2 cut(s)	292, 445
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	532, 633
BssNI	GRCGYC	2 cut(s)	5, 178
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	2 cut(s)	5, 178
BstAFI	CTTAAG	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	110, 258
BstDEI	CTNAG	2 cut(s)	84, 182
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	523
BstFNI	CGCG	2 cut(s)	69, 172
BstH2I	RGCGCY	2 cut(s)	181, 308
BstHHI	GCGC	3 cut(s)	180, 307, 553
BstKTI	GATC	2 cut(s)	535, 636
BstMBI	GATC	2 cut(s)	532, 633
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 266, 275, 284, 362, 476, 559, 617
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	5 cut(s)	217, 269, 300, 356, 373
BstSFI	CTRYAG	2 cut(s)	471, 618
BstUI	CGCG	2 cut(s)	69, 172
BstV1I	GCAGC	4 cut(s)	138, 457, 549, 632
BstV2I	GAAGAC	1 cut(s)	443
Bsu15I	ATCGAT	2 cut(s)	531, 636
BsuRI	GGCC	2 cut(s)	269, 300
BsuTUI	ATCGAT	2 cut(s)	531, 636
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	110, 258
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	3 cut(s)	180, 307, 553
Cfr10I	RCCGGY	2 cut(s)	292, 445
Cfr13I	GGNCC	1 cut(s)	299
ClaI	ATCGAT	2 cut(s)	531, 636
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	3 cut(s)	130, 196, 331
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	84, 182
DinI	GGCGCC	1 cut(s)	179
DpnI	GATC	2 cut(s)	534, 635
DpnII	GATC	2 cut(s)	532, 633
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	3 cut(s)	237, 279, 380
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	110
EgeI	GGCGCC	1 cut(s)	179
EheI	GGCGCC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	133, 199, 334
FaiI	YATR	7 cut(s)	122, 131, 197, 332, 381, 608, 629
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	3 cut(s)	129, 195, 330
FblI	GTMKAC	3 cut(s)	17, 405, 642
Fnu4HI	GCNGC	5 cut(s)	67, 127, 471, 563, 621
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	5 cut(s)	67, 127, 471, 563, 621
FspBI	CTAG	1 cut(s)	656
FspI	TGCGCA	1 cut(s)	552
GlaI	GCGC	3 cut(s)	179, 306, 552
GluI	GCNGC	5 cut(s)	67, 127, 471, 563, 621
GsaI	CCCAGC	1 cut(s)	311
HaeII	RGCGCY	2 cut(s)	181, 308
HaeIII	GGCC	2 cut(s)	269, 300
HapII	CCGG	8 cut(s)	219, 270, 284, 293, 302, 375, 446, 566
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	180, 307, 553
Hin1I	GRCGYC	2 cut(s)	5, 178
Hin1II	CATG	3 cut(s)	133, 199, 334
Hin6I	GCGC	3 cut(s)	178, 305, 551
HinP1I	GCGC	3 cut(s)	178, 305, 551
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	4 cut(s)	82, 280, 590, 603
HpaII	CCGG	8 cut(s)	219, 270, 284, 293, 302, 375, 446, 566
HphI	GGTGA	3 cut(s)	250, 391, 517
Hpy166II	GTNNAC	3 cut(s)	18, 406, 643
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	656
Hpy8I	GTNNAC	3 cut(s)	18, 406, 643
HpyAV	CCTTC	3 cut(s)	268, 310, 664
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	473, 620
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 266, 275, 284, 362, 476, 559, 617
HpyF3I	CTNAG	2 cut(s)	84, 182
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	2 cut(s)	5, 178
Hsp92II	CATG	3 cut(s)	133, 199, 334
HspAI	GCGC	3 cut(s)	178, 305, 551
KasI	GGCGCC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	532, 633
LmnI	GCTCC	4 cut(s)	158, 205, 292, 476
Lsp1109I	GCAGC	4 cut(s)	138, 457, 549, 632
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	187, 523
MalI	GATC	2 cut(s)	534, 635
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	2 cut(s)	532, 633
MboII	GAAGA	2 cut(s)	84, 448
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	2 cut(s)	161, 546
Mly113I	GGCGCC	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	76, 274
MmeI	TCCRAC	2 cut(s)	165, 243
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	8 cut(s)	219, 270, 284, 293, 302, 375, 446, 566
MspR9I	CCNGG	5 cut(s)	219, 271, 302, 358, 375
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	2 cut(s)	69, 172
MwoI	GCNNNNNNNGC	8 cut(s)	126, 266, 275, 284, 362, 476, 559, 617
NarI	GGCGCC	1 cut(s)	178
NciI	CCSGG	4 cut(s)	219, 271, 302, 375
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	532, 633
NlaIII	CATG	3 cut(s)	133, 199, 334
NlaIV	GGNNCC	3 cut(s)	179, 201, 288
NmuCI	GTSAC	2 cut(s)	187, 523
NsbI	TGCGCA	1 cut(s)	552
NspI	RCATGY	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	590, 603
PkrI	GCNGC	5 cut(s)	68, 128, 472, 564, 622
PleI	GAGTC	2 cut(s)	76, 274
PluTI	GGCGCC	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	76, 274
Psp6I	CCWGG	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	179, 201, 288
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	2 cut(s)	475, 622
PstNI	CAGNNNCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	5 cut(s)	67, 127, 471, 563, 621
Sau3AI	GATC	2 cut(s)	532, 633
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	76, 274
ScrFI	CCNGG	5 cut(s)	219, 271, 302, 358, 375
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	471, 618
SfoI	GGCGCC	1 cut(s)	179
SfuI	TTCGAA	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	161, 546
SsiI	CCGC	6 cut(s)	67, 172, 222, 290, 365, 479
SspDI	GGCGCC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	5 cut(s)	217, 269, 300, 356, 373
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	314, 531, 581, 636, 642
TasI	AATT	2 cut(s)	161, 546
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	590, 603
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseFI	GTSAC	2 cut(s)	187, 523
TseI	GCWGC	4 cut(s)	126, 470, 562, 620
Tsp45I	GTSAC	2 cut(s)	187, 523
Vha464I	CTTAAG	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	655
XceI	RCATGY	1 cut(s)	133
XmiI	GTMKAC	3 cut(s)	17, 405, 642
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.