Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004483.1

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

94976 .. 98038

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004483.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgaaatctgtggtgagagctgtcaaccgtccgatttcaatcggacggttcagaaaccgaaaaacggcgaattctcagccaccagatctcaaaagcatcggcggattctcagccaccagatctcatgacgaggccgagcccgtgtcgtccatttccaccacccaacacctccttccatctttctcctcacccaacaccactaattacgactctaccaggtcgcagctgctctcctcttctctctggggctcacccatcagcataagcagcttctcttccacccccaaaatctctccccagttccaaacccggaggcggctcagcgtcaccgcaatggccccacccaaggccaaaccgggcggcaaagccaagaaagtggtcggaatgataaagctggcgcttgaggccgggaaggccactccggcgccgccggtgggtcccgcgctgggttctaaaggtgtgaatatcatggctttctgtaaggattacaatgccaggacggcggacaaggccggttacgtcattcccgtcgaaattaccgtctacgatgataagagttttactttcattttgaagactccacctgcttcgattttgcttcttaaggctgctggagctgagaaaggttcaaaagacccacaattggagaaagtagggactgtgaccattgaccagctgcgtacaattgcacaagagaagctaccagacttgaattgcacaactatagagtcggcaatgagaattatagctggcactgcagctaatatggggatcgatattgaccctcctgttctggaaaagaaaaagaaggaagttcttctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

274

Amino Acids

29.27

Weight (kDa)

9.92

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	1 cut(s)	443
AciI	CCGC	7 cut(s)	102, 316, 330, 360, 428, 441, 503
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	6 cut(s)	64, 315, 346, 434, 446, 643
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	39, 574, 630, 712
AjnI	CCWGG	2 cut(s)	215, 494
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	9 cut(s)	20, 226, 270, 394, 617, 676, 700, 749, 761
AluI	AGCT	9 cut(s)	20, 226, 270, 394, 617, 676, 700, 749, 761
AlwI	GGATC	1 cut(s)	779
AoxI	GGCC	6 cut(s)	132, 336, 348, 405, 414, 510
ApeKI	GCWGC	6 cut(s)	223, 226, 267, 608, 676, 758
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
Asp700I	GAANNNNTTC	1 cut(s)	816
AspLEI	GCGC	3 cut(s)	400, 427, 445
AspS9I	GGNCC	2 cut(s)	337, 437
AsuC2I	CCSGG	3 cut(s)	310, 357, 409
AsuHPI	GGTGA	4 cut(s)	25, 180, 243, 319
AvaII	GGWCC	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	2 cut(s)	141, 251
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	6 cut(s)	213, 235, 279, 595, 663, 770
BccI	CCATC	2 cut(s)	184, 263
BceAI	ACGGC	2 cut(s)	81, 516
BciT130I	CCWGG	2 cut(s)	217, 496
BcnI	CCSGG	3 cut(s)	310, 357, 409
BfmI	CTRYAG	3 cut(s)	723, 756, 821
BfoI	RGCGCY	2 cut(s)	401, 428
BfrI	CTTAAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	592
BglI	GCCNNNNNGGC	3 cut(s)	413, 422, 500
BglII	AGATCT	2 cut(s)	85, 119
BisI	GCNGC	9 cut(s)	224, 227, 268, 317, 361, 428, 609, 677, 759
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	9 cut(s)	225, 228, 269, 318, 362, 429, 610, 678, 760
Bme1390I	CCNGG	5 cut(s)	217, 310, 357, 409, 496
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	337, 437
BmiI	GGNNCC	4 cut(s)	339, 426, 438, 439
BmrFI	CCNGG	5 cut(s)	217, 310, 357, 409, 496
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	3 cut(s)	310, 357, 409
Bsa29I	ATCGAT	1 cut(s)	774
BsaBI	GATNNNNATC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 315, 346, 434, 446, 643
Bse118I	RCCGGY	2 cut(s)	430, 512
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	339, 741
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	217, 496
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	6 cut(s)	64, 315, 346, 434, 446, 643
BseMI	GCAATG	2 cut(s)	339, 741
BseMII	CTCAG	4 cut(s)	89, 123, 334, 609
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	175, 223
BseXI	GCAGC	6 cut(s)	213, 235, 279, 595, 663, 770
BseYI	CCCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	6 cut(s)	134, 338, 350, 407, 416, 512
BshNI	GGYRCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	774
BsiSI	CCGG	6 cut(s)	310, 356, 408, 422, 431, 513
BslFI	GGGAC	2 cut(s)	423, 670
BslI	CCNNNNNNNGG	6 cut(s)	64, 315, 346, 434, 446, 643
BsmFI	GGGAC	2 cut(s)	423, 670
BsnI	GGCC	6 cut(s)	134, 338, 350, 407, 416, 512
Bsp1286I	GDGCHC	2 cut(s)	141, 251
Bsp143I	GATC	3 cut(s)	85, 119, 771
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	7 cut(s)	102, 316, 330, 360, 428, 441, 503
BspANI	GGCC	6 cut(s)	134, 338, 350, 407, 416, 512
BspCNI	CTCAG	4 cut(s)	88, 122, 333, 610
BspDI	ATCGAT	1 cut(s)	774
BspFNI	CGCG	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	339, 426, 438, 439
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	602
BsrDI	GCAATG	2 cut(s)	339, 741
BsrFI	RCCGGY	2 cut(s)	430, 512
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	2 cut(s)	430, 512
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	85, 119, 771
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	217, 496
Bst4CI	ACNGT	4 cut(s)	29, 48, 541, 661
Bst6I	CTCTTC	2 cut(s)	241, 280
BstACI	GRCGYC	1 cut(s)	425
BstAFI	CTTAAG	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	396, 751
BstDEI	CTNAG	4 cut(s)	75, 109, 320, 618
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	2 cut(s)	401, 428
BstHHI	GCGC	3 cut(s)	400, 427, 445
BstKTI	GATC	3 cut(s)	88, 122, 774
BstMBI	GATC	3 cut(s)	85, 119, 771
BstMWI	GCNNNNNNNGC	8 cut(s)	267, 404, 413, 422, 500, 509, 614, 755
BstNI	CCWGG	2 cut(s)	217, 496
BstSCI	CCNGG	5 cut(s)	215, 308, 355, 407, 494
BstSFI	CTRYAG	3 cut(s)	723, 756, 821
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	6 cut(s)	213, 235, 279, 595, 663, 770
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	2 cut(s)	85, 119
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	85, 119
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	6 cut(s)	134, 338, 350, 407, 416, 512
BsuTUI	ATCGAT	1 cut(s)	774
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	396, 751
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	3 cut(s)	400, 427, 445
Cfr10I	RCCGGY	2 cut(s)	430, 512
Cfr13I	GGNCC	2 cut(s)	337, 437
ClaI	ATCGAT	1 cut(s)	774
CseI	GACGC	1 cut(s)	313
CsiI	ACCWGGT	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	2 cut(s)	125, 469
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	4 cut(s)	75, 109, 320, 618
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	3 cut(s)	87, 121, 773
DpnII	GATC	3 cut(s)	85, 119, 771
Eam1104I	CTCTTC	2 cut(s)	241, 280
EarI	CTCTTC	2 cut(s)	241, 280
EciI	GGCGGA	2 cut(s)	117, 518
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	2 cut(s)	141, 251
Eco47I	GGWCC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	215, 494
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	2 cut(s)	141, 251
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	2 cut(s)	128, 472
FaiI	YATR	6 cut(s)	126, 263, 470, 725, 746, 767
FaqI	GGGAC	2 cut(s)	423, 670
FatI	CATG	2 cut(s)	124, 468
FauI	CCCGC	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	9 cut(s)	224, 227, 268, 317, 361, 428, 609, 677, 759
FriOI	GRGCYC	2 cut(s)	141, 251
Fsp4HI	GCNGC	9 cut(s)	224, 227, 268, 317, 361, 428, 609, 677, 759
GlaI	GCGC	3 cut(s)	399, 426, 444
GluI	GCNGC	9 cut(s)	224, 227, 268, 317, 361, 428, 609, 677, 759
GsaI	CCCAGC	1 cut(s)	449
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	2 cut(s)	401, 428
HaeIII	GGCC	6 cut(s)	134, 338, 350, 407, 416, 512
HapII	CCGG	6 cut(s)	310, 356, 408, 422, 431, 513
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	3 cut(s)	400, 427, 445
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	128, 472
Hin6I	GCGC	3 cut(s)	398, 425, 443
HinP1I	GCGC	3 cut(s)	398, 425, 443
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	105, 209, 577, 728
HpaII	CCGG	6 cut(s)	310, 356, 408, 422, 431, 513
HphI	GGTGA	4 cut(s)	25, 180, 243, 319
Hpy166II	GTNNAC	2 cut(s)	25, 544
Hpy188I	TCNGA	4 cut(s)	33, 44, 53, 383
Hpy188III	TCNNGA	2 cut(s)	125, 794
Hpy8I	GTNNAC	2 cut(s)	25, 544
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	182, 406, 802
HpyCH4III	ACNGT	4 cut(s)	29, 48, 541, 661
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	689, 717, 758
HpyF10VI	GCNNNNNNNGC	8 cut(s)	267, 404, 413, 422, 500, 509, 614, 755
HpyF3I	CTNAG	4 cut(s)	75, 109, 320, 618
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	128, 472
HspAI	GCGC	3 cut(s)	398, 425, 443
KasI	GGCGCC	1 cut(s)	424
KflI	GGGWCCC	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	85, 119, 771
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	6 cut(s)	213, 235, 279, 595, 663, 770
LweI	GCATC	1 cut(s)	105
MabI	ACCWGGT	1 cut(s)	215
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	3 cut(s)	325, 515, 661
MalI	GATC	3 cut(s)	87, 121, 773
MboI	GATC	3 cut(s)	85, 119, 771
MboII	GAAGA	4 cut(s)	228, 267, 586, 809
MfeI	CAATTG	2 cut(s)	641, 684
MflI	RGATCY	2 cut(s)	85, 119
MhlI	GDGCHC	2 cut(s)	141, 251
MluCI	AATT	7 cut(s)	70, 202, 534, 641, 684, 712, 741
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	3 cut(s)	203, 571, 737
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	7 cut(s)	124, 179, 196, 244, 306, 397, 795
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	226, 676
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	6 cut(s)	310, 356, 408, 422, 431, 513
MspR9I	CCNGG	5 cut(s)	217, 310, 357, 409, 496
MunI	CAATTG	2 cut(s)	641, 684
MvaI	CCWGG	2 cut(s)	217, 496
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	8 cut(s)	267, 404, 413, 422, 500, 509, 614, 755
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	3 cut(s)	310, 357, 409
NdeII	GATC	3 cut(s)	85, 119, 771
NlaIII	CATG	2 cut(s)	128, 472
NlaIV	GGNNCC	4 cut(s)	339, 426, 438, 439
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	2 cut(s)	325, 661
PagI	TCATGA	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	2 cut(s)	525, 537
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	9 cut(s)	225, 228, 269, 318, 362, 429, 610, 678, 760
PleI	GAGTC	3 cut(s)	203, 571, 736
PluTI	GGCGCC	1 cut(s)	428
PpsI	GAGTC	3 cut(s)	203, 571, 736
PpuMI	RGGWCCY	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	215, 494
PspFI	CCCAGC	1 cut(s)	445
PspGI	CCWGG	2 cut(s)	215, 494
PspN4I	GGNNCC	4 cut(s)	339, 426, 438, 439
PspPI	GGNCC	2 cut(s)	337, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	85, 119
PvuII	CAGCTG	2 cut(s)	226, 676
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	9 cut(s)	224, 227, 268, 317, 361, 428, 609, 677, 759
Sau3AI	GATC	3 cut(s)	85, 119, 771
Sau96I	GGNCC	2 cut(s)	337, 437
SchI	GAGTC	3 cut(s)	203, 571, 737
ScrFI	CCNGG	5 cut(s)	217, 310, 357, 409, 496
SduI	GDGCHC	2 cut(s)	141, 251
SexAI	ACCWGGT	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	3 cut(s)	723, 756, 821
SfiI	GGCCNNNNNGGCC	1 cut(s)	413
SfoI	GGCGCC	1 cut(s)	426
SgrAI	CRCCGGYG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	2 cut(s)	401, 602
SmoI	CTYRAG	2 cut(s)	401, 602
Sse9I	AATT	7 cut(s)	70, 202, 534, 641, 684, 712, 741
SsiI	CCGC	7 cut(s)	102, 316, 330, 360, 428, 441, 503
SspDI	GGCGCC	1 cut(s)	424
StyD4I	CCNGG	5 cut(s)	215, 308, 355, 407, 494
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	4 cut(s)	29, 48, 541, 661
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	531, 590, 774
TasI	AATT	7 cut(s)	70, 202, 534, 641, 684, 712, 741
TauI	GCSGC	3 cut(s)	319, 363, 430
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	2 cut(s)	325, 661
TseI	GCWGC	6 cut(s)	223, 226, 267, 608, 676, 758
Tsp45I	GTSAC	2 cut(s)	325, 661
TspDTI	ATGAA	2 cut(s)	17, 556
TspRI	CASTG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.