AT1G34245

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0018309
Physical Location & Seq
Forward (+)
12472868 .. 12473974
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34245.1

Sequence Viewer

Length: 363 bp
ATGACGAAGTTTGTACGCAAGTATATGTTTTGCCTCGTCCTAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACACGGTCAATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAACGCACCACAAGAAGGAAATAAGCAAAAACGGAGGGGTAGAAATGGAAATGTACCCAACAGGATCAAGCTTACCGGATTGTTCATACGCGTGTGGCGCATGTTCGCCGTGTAAACGTGTGATGATTAGTTTCGAATGCTCAGTCGCCGAATCATGTAGCGTCATCTACAGATGCACGTGCAGAGGGAGATACTATCACGTGCCATCTAGAGCTTGA

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

8.96

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 69 - 116 3.2e-13 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34245
fragaria_vesca FvH4_2g12460
malus_domestica MD00G1078200.v1.1
prunus_persica Prupe.8G050100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272891
rosa_laevigata RLG00000013657
rosa_roxburghii Rroxscaffold_7G00195940
rosa_samantha Rh6AG186900 Rh6DG181000
rosa_wichuraiana Rw6G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 236
AciI CCGC 3 cut(s) 51, 86, 111
AclWI GGATC 1 cut(s) 217
AcvI CACGTG 2 cut(s) 324, 346
AfaI GTAC 2 cut(s) 15, 200
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 234, 262
AluBI AGCT 3 cut(s) 143, 216, 359
AluI AGCT 3 cut(s) 143, 216, 359
AlwI GGATC 1 cut(s) 217
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AspLEI GCGC 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 279
BbrPI CACGTG 2 cut(s) 324, 346
BbsI GAAGAC 1 cut(s) 37
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 238
BfaI CTAG 2 cut(s) 41, 354
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 2 cut(s) 51, 86
BlsI GCNGC 2 cut(s) 52, 87
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 279
BsaAI YACGTR 2 cut(s) 324, 346
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 2 cut(s) 53, 236
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 3 cut(s) 51, 86, 111
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 2 cut(s) 53, 236
BspPI GGATC 1 cut(s) 217
BspT104I TTCGAA 1 cut(s) 279
BssMI GATC 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 103
BstBAI YACGTR 2 cut(s) 324, 346
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 286
BstFNI CGCG 2 cut(s) 53, 236
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 2 cut(s) 53, 236
BstV2I GAAGAC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 245
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 14, 199
CviAII CATG 2 cut(s) 246, 300
CviJI RGCY 3 cut(s) 143, 216, 359
CviKI_1 RGCY 3 cut(s) 143, 216, 359
CviQI GTAC 2 cut(s) 14, 199
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 126
Eco72I CACGTG 2 cut(s) 324, 346
FaeI CATG 2 cut(s) 249, 303
FaiI YATR 6 cut(s) 24, 26, 134, 232, 247, 301
FatI CATG 2 cut(s) 245, 299
Fnu4HI GCNGC 2 cut(s) 51, 86
Fsp4HI GCNGC 2 cut(s) 51, 86
FspBI CTAG 2 cut(s) 41, 354
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 51, 86
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 249, 303
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 296
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 70, 260
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 2 cut(s) 70, 260
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 3 cut(s) 262, 323, 345
HpyCH4V TGCA 2 cut(s) 321, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 3 cut(s) 262, 323, 345
Hsp92II CATG 2 cut(s) 249, 303
HspAI GCGC 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 2 cut(s) 192, 234
LweI GCATC 1 cut(s) 308
MaeI CTAG 2 cut(s) 41, 354
MaeII ACGT 3 cut(s) 262, 323, 345
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 37
MluI ACGCGT 1 cut(s) 234
MnlI CCTC 3 cut(s) 44, 173, 323
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 235
MspI CCGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 287
MvnI CGCG 2 cut(s) 53, 236
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 209
NlaIII CATG 2 cut(s) 249, 303
NspI RCATGY 1 cut(s) 249
NspV TTCGAA 1 cut(s) 279
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 52, 87
PmaCI CACGTG 2 cut(s) 324, 346
PmlI CACGTG 2 cut(s) 324, 346
Ppu21I YACGTR 2 cut(s) 324, 346
PspCI CACGTG 2 cut(s) 324, 346
RsaI GTAC 2 cut(s) 15, 200
RsaNI GTAC 2 cut(s) 14, 199
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 51, 86
Sau3AI GATC 1 cut(s) 209
SetI ASST 6 cut(s) 145, 218, 265, 326, 348, 361
SfaNI GCATC 1 cut(s) 308
SfcI CTRYAG 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 235
SsiI CCGC 3 cut(s) 51, 86, 111
SspMI CTAG 2 cut(s) 41, 354
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 3 cut(s) 265, 326, 348
TaqI TCGA 1 cut(s) 279
TauI GCSGC 2 cut(s) 53, 88
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 219
TspGWI ACGGA 1 cut(s) 192
XbaI TCTAGA 1 cut(s) 353
XceI RCATGY 1 cut(s) 249
XspI CTAG 2 cut(s) 41, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.