RLG00000013657

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018309
Physical Location & Seq
Forward (+)
35218578 .. 35220259
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013657

Sequence Viewer

Length: 327 bp
ATGGGTCCAAGTGAACGCCCACAGATCGTGATGGAAGATGCAAATCTTCAAAAACAAATTGCAGCTGCTTCTACATACAATAGGGATGACGTCCGGACGTATCTTCAGAAAGGAGGAAAGAAAGAAGTAGGAACAAAGATGGAAATGGAACTATACCCGACCGGAACCGGGTCGAGCTTGCCGGACTGTTCACACGCCTGCGGGCCGTGCTTTCCATGCAAAAGGGTGATGGTGAGCTTCAGTAAGTGCTCCAGTACTTCGGAATCATGCCCGATTGTCTACAGGTGCATTTGCAAAGGCAAATACTACCATGTCCCCGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
EPF

Protein Analysis

109

Amino Acids

11.88

Weight (kDa)

8.63

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 56 - 105 1.2e-12 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34245
fragaria_vesca FvH4_2g12460
malus_domestica MD00G1078200.v1.1
prunus_persica Prupe.8G050100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272891
rosa_laevigata RLG00000013657
rosa_roxburghii Rroxscaffold_7G00195940
rosa_samantha Rh6AG186900 Rh6DG181000
rosa_wichuraiana Rw6G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 1 cut(s) 201
AcuI CTGAAG 2 cut(s) 89, 223
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 3 cut(s) 65, 177, 237
AluI AGCT 3 cut(s) 65, 177, 237
Alw21I GWGCWC 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 2 cut(s) 203, 319
ApeKI GCWGC 2 cut(s) 62, 65
AspS9I GGNCC 2 cut(s) 5, 203
AsuC2I CCSGG 2 cut(s) 169, 318
AsuHPI GGTGA 2 cut(s) 238, 244
AvaII GGWCC 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 52, 74
BccI CCATC 3 cut(s) 25, 133, 223
BceAI ACGGC 1 cut(s) 190
BcnI CCSGG 2 cut(s) 169, 318
BfmI CTRYAG 1 cut(s) 280
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 169, 318
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 5, 203
BmiI GGNNCC 2 cut(s) 6, 166
BmrFI CCNGG 2 cut(s) 169, 318
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 235
BpuMI CCSGG 2 cut(s) 169, 318
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 2 cut(s) 93, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 52, 74
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 205, 321
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 5 cut(s) 94, 162, 168, 182, 318
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 205, 321
Bsp1286I GDGCHC 1 cut(s) 251
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 205, 321
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 6, 166
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 179, 199, 203
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 2 cut(s) 207, 216
BstSCI CCNGG 2 cut(s) 167, 316
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 52, 74
BsuRI GGCC 2 cut(s) 205, 321
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 179, 199, 203
Cfr13I GGNCC 2 cut(s) 5, 203
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 216, 267, 311
CviJI RGCY 5 cut(s) 65, 177, 205, 237, 321
CviKI_1 RGCY 5 cut(s) 65, 177, 205, 237, 321
CviQI GTAC 1 cut(s) 255
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 5
Eco57I CTGAAG 2 cut(s) 89, 223
FaeI CATG 3 cut(s) 219, 270, 314
FaiI YATR 5 cut(s) 76, 154, 217, 268, 312
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 215, 266, 310
FauI CCCGC 1 cut(s) 194
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 63, 66
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 63, 66
GluI GCNGC 2 cut(s) 63, 66
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 205, 321
HapII CCGG 5 cut(s) 94, 162, 168, 182, 318
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 3 cut(s) 219, 270, 314
HinfI GANTC 1 cut(s) 263
HpaII CCGG 5 cut(s) 94, 162, 168, 182, 318
HphI GGTGA 2 cut(s) 238, 244
Hpy166II GTNNAC 3 cut(s) 14, 191, 280
Hpy188I TCNGA 2 cut(s) 108, 262
Hpy188III TCNNGA 2 cut(s) 28, 94
Hpy8I GTNNAC 3 cut(s) 14, 191, 280
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 90, 98
HpyCH4V TGCA 5 cut(s) 41, 62, 219, 288, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 216
HpySE526I ACGT 2 cut(s) 90, 98
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 3 cut(s) 219, 270, 314
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 7 cut(s) 107, 175, 181, 195, 211, 265, 268
Lsp1109I GCAGC 2 cut(s) 52, 74
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 90, 98
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 3 cut(s) 38, 47, 95
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 57
MnlI CCTC 1 cut(s) 107
MroI TCCGGA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 5 cut(s) 94, 162, 168, 182, 318
MspR9I CCNGG 2 cut(s) 169, 318
MwoI GCNNNNNNNGC 2 cut(s) 207, 216
NciI CCSGG 2 cut(s) 169, 318
NdeII GATC 1 cut(s) 24
NlaIII CATG 3 cut(s) 219, 270, 314
NlaIV GGNNCC 2 cut(s) 6, 166
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 64, 67
PspN4I GGNNCC 2 cut(s) 6, 166
PspPI GGNCC 2 cut(s) 5, 203
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 2 cut(s) 63, 66
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 5, 203
ScaI AGTACT 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 169, 318
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 67, 93, 101, 179, 239, 287
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 5
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 167, 316
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 93, 101
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 263
TseI GCWGC 2 cut(s) 62, 65
VpaK11BI GGWCC 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 279
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.