Rw6G016180

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018309
Physical Location & Seq
Reverse (-)
31619990 .. 31621046
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016180.1

Sequence Viewer

Length: 393 bp
ATGAAGAACTTGTCATCTCTTGTAGTAGCACACACAAGTTTCCTACTTGTGATTTTCTTCATTCTAATTTTGACAAGCACAAGCCTACGTGTGACGCTTCATCCTTCAAATCTTCAAAAACAAATTGCAGCTGCTTCTACATACAATAGGGATGACGTCCGGACGTATCTTCAGAAAGGAGGAAAGAAAGAAGTAGGAACAAAGATGGAAATGGAACTATACCCGACCGGAACCGGGTCGAGCTTGCCGGACTGTTCACACGCCTGCGGGCCGTGCTTTCCATGCAAAAGGGTGATGGTGAGCTTCAGTAAGTGCTCCAGTACTTCGGAATCATGCCCGATTGTCTACAGGTGCATTTGCAAAGGCAAATACTACCATGTCCCCGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
EPF

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

9.19

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 78 - 127 1.8e-12 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34245
fragaria_vesca FvH4_2g12460
malus_domestica MD00G1078200.v1.1
prunus_persica Prupe.8G050100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272891
rosa_laevigata RLG00000013657
rosa_roxburghii Rroxscaffold_7G00195940
rosa_samantha Rh6AG186900 Rh6DG181000
rosa_wichuraiana Rw6G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 1 cut(s) 267
AcuI CTGAAG 2 cut(s) 155, 289
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 2 cut(s) 108, 116
AluBI AGCT 3 cut(s) 131, 243, 303
AluI AGCT 3 cut(s) 131, 243, 303
Alw21I GWGCWC 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 2 cut(s) 269, 385
ApeKI GCWGC 2 cut(s) 128, 131
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 2 cut(s) 235, 384
AsuHPI GGTGA 2 cut(s) 304, 310
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 118, 140
BccI CCATC 2 cut(s) 199, 289
BceAI ACGGC 1 cut(s) 256
BcnI CCSGG 2 cut(s) 235, 384
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 129, 132
BlsI GCNGC 2 cut(s) 130, 133
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 235, 384
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 235, 384
BpmI CTGGAG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 235, 384
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 2 cut(s) 159, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 318
BseAI TCCGGA 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 2 cut(s) 100, 157
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 2 cut(s) 118, 140
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 271, 387
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 5 cut(s) 160, 228, 234, 248, 384
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 271, 387
Bsp1286I GDGCHC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 159
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 271, 387
BspEI TCCGGA 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 382
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 245, 265, 269
BstF5I GGATG 2 cut(s) 100, 157
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 273, 282
BstSCI CCNGG 2 cut(s) 233, 382
BstSFI CTRYAG 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 118, 140
BsuRI GGCC 2 cut(s) 271, 387
BtsCI GGATG 2 cut(s) 100, 157
Cac8I GCNNGC 3 cut(s) 245, 265, 269
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 321
CviAII CATG 3 cut(s) 282, 333, 377
CviJI RGCY 6 cut(s) 84, 131, 243, 271, 303, 387
CviKI_1 RGCY 6 cut(s) 84, 131, 243, 271, 303, 387
CviQI GTAC 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 155, 289
FaeI CATG 3 cut(s) 285, 336, 380
FaiI YATR 5 cut(s) 142, 220, 283, 334, 378
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 281, 332, 376
FauI CCCGC 1 cut(s) 260
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 129, 132
FokI GGATG 2 cut(s) 87, 164
Fsp4HI GCNGC 2 cut(s) 129, 132
GluI GCNGC 2 cut(s) 129, 132
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 2 cut(s) 271, 387
HapII CCGG 5 cut(s) 160, 228, 234, 248, 384
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 3 cut(s) 285, 336, 380
HinfI GANTC 1 cut(s) 329
HpaII CCGG 5 cut(s) 160, 228, 234, 248, 384
HphI GGTGA 2 cut(s) 304, 310
Hpy166II GTNNAC 2 cut(s) 257, 346
Hpy188I TCNGA 2 cut(s) 174, 328
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 2 cut(s) 257, 346
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 88, 156, 164
HpyCH4V TGCA 4 cut(s) 128, 285, 354, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 282
HpySE526I ACGT 3 cut(s) 88, 156, 164
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 3 cut(s) 285, 336, 380
Kpn2I TCCGGA 1 cut(s) 159
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 173, 241, 247, 261, 277, 331, 334
Lsp1109I GCAGC 2 cut(s) 118, 140
MaeII ACGT 3 cut(s) 88, 156, 164
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 4 cut(s) 16, 49, 104, 161
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 66, 123
MnlI CCTC 1 cut(s) 173
MroI TCCGGA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 5 cut(s) 160, 228, 234, 248, 384
MspR9I CCNGG 2 cut(s) 235, 384
MwoI GCNNNNNNNGC 2 cut(s) 273, 282
NciI CCSGG 2 cut(s) 235, 384
NlaIII CATG 3 cut(s) 285, 336, 380
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 2 cut(s) 130, 133
Ppu21I YACGTR 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SatI GCNGC 2 cut(s) 129, 132
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 235, 384
SduI GDGCHC 1 cut(s) 317
SetI ASST 7 cut(s) 91, 133, 159, 167, 245, 305, 353
SfcI CTRYAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 66, 123
SsiI CCGC 1 cut(s) 267
StyD4I CCNGG 2 cut(s) 233, 382
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 91, 159, 167
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 66, 123
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 1 cut(s) 329
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 128, 131
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 17, 49, 89
XmiI GTMKAC 1 cut(s) 345
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.