Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0018309

Physical Location & Seq

Genomic Coordinates Forward (+)

5450909 .. 5452155

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G050100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACAAGTACTTGTCTCTTGGAGCCCGCGCAAGTTTCCTGCTTGGGATTTTCTTCATGTTAATTGTGGTGGGCAGAAGCCTACGTGTGAGGCCTCACCTCCCTTTAAACCTTCAAGCAGAAGTCATTACCGGTAACAGAGTCAAAGTTCGAATGCACCTTGAGGAAGGAGCAAATAAAGAAGAGAACATGGAGCTATACCCATTTGGGTCGAGCTTGCCGGACTGTTCACATGCTTGTGGACCATGCTTTCCATGCAAAAGAGTGATGGTGAGCTTCAAGTGCTCCGTTTCAGAGTCTTGCCCAATTGTCTACAGGTGCACCTGTAGAGGAAAGTACTACCATGTACCCTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0019899 GO:0019900 GO:0019901 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

EPF

Protein Analysis

120

Amino Acids

13.4

Weight (kDa)

9.14

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34245
fragaria_vesca	FvH4_2g12460
malus_domestica	MD00G1078200.v1.1
prunus_persica	Prupe.8G050100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272891
rosa_laevigata	RLG00000013657
rosa_roxburghii	Rroxscaffold_7G00195940
rosa_samantha	Rh6AG186900 Rh6DG181000
rosa_wichuraiana	Rw6G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	30
AciI	CCGC	1 cut(s)	28
AfaI	GTAC	3 cut(s)	11, 338, 348
AflIII	ACRYGT	1 cut(s)	85
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	116, 280
AluBI	AGCT	3 cut(s)	196, 216, 276
AluI	AGCT	3 cut(s)	196, 216, 276
Alw21I	GWGCWC	2 cut(s)	287, 323
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	319
AsiGI	ACCGGT	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	89, 283
AsuII	TTCGAA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	2 cut(s)	287, 323
BccI	CCATC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	313, 325
BmcAI	AGTACT	2 cut(s)	11, 338
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	94
BshTI	ACCGGT	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	287, 323
BsiSI	CCGG	2 cut(s)	132, 221
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	3 cut(s)	28, 287, 323
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	28, 218
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	255, 282
BstNSI	RCATGY	1 cut(s)	236
BstSFI	CTRYAG	2 cut(s)	313, 325
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	28, 218
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	10, 337, 347
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	6 cut(s)	58, 190, 233, 246, 255, 344
CviJI	RGCY	6 cut(s)	26, 81, 94, 196, 216, 276
CviKI_1	RGCY	6 cut(s)	26, 81, 94, 196, 216, 276
CviQI	GTAC	3 cut(s)	10, 337, 347
DraI	TTTAAA	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	6 cut(s)	61, 193, 236, 249, 258, 347
FaiI	YATR	7 cut(s)	59, 191, 199, 234, 247, 256, 345
FatI	CATG	6 cut(s)	57, 189, 232, 245, 254, 343
FauI	CCCGC	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	28
GlaI	GCGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	2 cut(s)	132, 221
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	61, 193, 236, 249, 258, 347
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	141, 296
HpaII	CCGG	2 cut(s)	132, 221
HphI	GGTGA	2 cut(s)	89, 283
Hpy166II	GTNNAC	4 cut(s)	230, 242, 313, 321
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	4 cut(s)	230, 242, 313, 321
HpyAV	CCTTC	2 cut(s)	122, 161
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	157, 258, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	255, 282
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	6 cut(s)	61, 193, 236, 249, 258, 347
HspAI	GCGC	1 cut(s)	30
LmnI	GCTCC	4 cut(s)	23, 170, 193, 290
LpnPI	CCDG	5 cut(s)	53, 145, 234, 301, 337
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	46, 194
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	28, 287, 323
MluCI	AATT	3 cut(s)	63, 306, 355
MlyI	GAGTC	2 cut(s)	150, 305
MnlI	CCTC	5 cut(s)	84, 105, 110, 157, 323
MseI	TTAA	2 cut(s)	62, 107
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	132, 221
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	159
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	255, 282
NlaIII	CATG	6 cut(s)	61, 193, 236, 249, 258, 347
NlaIV	GGNNCC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	131
PleI	GAGTC	2 cut(s)	149, 304
PpsI	GAGTC	2 cut(s)	149, 304
Ppu21I	YACGTR	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	11, 338, 348
RsaNI	GTAC	3 cut(s)	10, 337, 347
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	62, 107
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	2 cut(s)	11, 338
SchI	GAGTC	2 cut(s)	150, 305
SduI	GDGCHC	3 cut(s)	28, 287, 323
SetI	ASST	9 cut(s)	88, 102, 114, 162, 198, 218, 278, 320, 326
SfcI	CTRYAG	2 cut(s)	313, 325
SfuI	TTCGAA	1 cut(s)	151
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	63, 306, 355
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	151, 212
TasI	AATT	3 cut(s)	63, 306, 355
TatI	WGTACW	2 cut(s)	9, 336
Tru1I	TTAA	2 cut(s)	62, 107
Tru9I	TTAA	2 cut(s)	62, 107
TspDTI	ATGAA	2 cut(s)	17, 46
TspGWI	ACGGA	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	312
ZrmI	AGTACT	2 cut(s)	11, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.