FvH4_2g12460

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018309
Physical Location & Seq
Reverse (-)
10927996 .. 10929051
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12460.t1

Sequence Viewer

Length: 387 bp
ATGAAGAACTTGTCATCTCTTGGAGTAGCCCAAACAATTCTCCTACTTGTGATTTTCTCCATTCTAATTTGGACAAGCTCAAGCCTACGTGTGACGCCTCAACCTTCAAATCTTCAAAGAAAAGTCGCTTCTGCGTATAACAGAGATGACGTCCGAACGTATCTTGAGAAAGGAGGAAAGGATGAAGTAGGAACAAAGATGGAAATGGAACTATACCCGACCGGAACTGGCTCGAGCTTGCCAGACTGTTCACACGCCTGCGGGCCGTGCTTTCCGTGTAAAAGGGTGATGGTGAGTTTCAGCAAATGCTCGAGTACTTCGGAGTCGTGCCCGATTGTCTACAGGTGCATTTGCAAAGGCAAATACTACCATGTCCCCGGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
EPF

Protein Analysis

129

Amino Acids

14.06

Weight (kDa)

8.95

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 76 - 125 1.8e-12 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34245
fragaria_vesca FvH4_2g12460
malus_domestica MD00G1078200.v1.1
prunus_persica Prupe.8G050100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0272891
rosa_laevigata RLG00000013657
rosa_roxburghii Rroxscaffold_7G00195940
rosa_samantha Rh6AG186900 Rh6DG181000
rosa_wichuraiana Rw6G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 339
AciI CCGC 1 cut(s) 261
AcyI GRCGYC 2 cut(s) 95, 150
AfaI GTAC 1 cut(s) 316
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 2 cut(s) 108, 116
AluBI AGCT 2 cut(s) 78, 237
AluI AGCT 2 cut(s) 78, 237
Ama87I CYCGRG 2 cut(s) 232, 310
AoxI GGCC 2 cut(s) 263, 379
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 298, 304
AvaI CYCGRG 2 cut(s) 232, 310
BaeGI GKGCMC 1 cut(s) 332
BccI CCATC 2 cut(s) 193, 283
BceAI ACGGC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 378
BmeT110I CYCGRG 2 cut(s) 232, 310
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 64, 185
BpuMI CCSGG 1 cut(s) 378
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 2 cut(s) 95, 150
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 265, 381
BsiEI CGRYCG 1 cut(s) 222
BsiHKCI CYCGRG 2 cut(s) 232, 310
BsiSI CCGG 2 cut(s) 222, 378
BslFI GGGAC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 2 cut(s) 265, 381
BsoBI CYCGRG 2 cut(s) 232, 310
Bsp1286I GDGCHC 1 cut(s) 332
BspACI CCGC 1 cut(s) 261
BspANI GGCC 2 cut(s) 265, 381
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 376
BssNI GRCGYC 2 cut(s) 95, 150
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 2 cut(s) 95, 150
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 239, 259, 263
BstF5I GGATG 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 265, 381
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 239, 259, 263
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 371
CviJI RGCY 7 cut(s) 29, 78, 84, 231, 237, 265, 381
CviKI_1 RGCY 7 cut(s) 29, 78, 84, 231, 237, 265, 381
CviQI GTAC 1 cut(s) 315
Eco88I CYCGRG 2 cut(s) 232, 310
FaeI CATG 1 cut(s) 374
FaiI YATR 3 cut(s) 138, 214, 372
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 370
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 339
FokI GGATG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 265, 381
HapII CCGG 2 cut(s) 222, 378
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 2 cut(s) 95, 150
Hin1II CATG 1 cut(s) 374
HinfI GANTC 1 cut(s) 323
HpaII CCGG 2 cut(s) 222, 378
HphI GGTGA 2 cut(s) 298, 304
Hpy166II GTNNAC 2 cut(s) 251, 340
Hpy188I TCNGA 2 cut(s) 155, 322
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 251, 340
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 3 cut(s) 88, 150, 158
HpyCH4V TGCA 2 cut(s) 348, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpySE526I ACGT 3 cut(s) 88, 150, 158
Hsp92I GRCGYC 2 cut(s) 95, 150
Hsp92II CATG 1 cut(s) 374
LpnPI CCDG 5 cut(s) 213, 235, 255, 271, 328
MaeII ACGT 3 cut(s) 88, 150, 158
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 2 cut(s) 16, 104
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 2 cut(s) 36, 66
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 2 cut(s) 108, 167
MspI CCGG 2 cut(s) 222, 378
MspR9I CCNGG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 267
NciI CCSGG 1 cut(s) 378
NlaIII CATG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 91
PaeR7I CTCGAG 2 cut(s) 232, 310
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 89
PspPI GGNCC 1 cut(s) 263
PspXI VCTCGAGB 2 cut(s) 232, 310
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 80, 91, 106, 153, 161, 239, 347
SfcI CTRYAG 1 cut(s) 340
Sfr274I CTCGAG 2 cut(s) 232, 310
SlaI CTCGAG 2 cut(s) 232, 310
SmlI CTYRAG 4 cut(s) 79, 164, 232, 310
SmoI CTYRAG 4 cut(s) 79, 164, 232, 310
Sse9I AATT 2 cut(s) 36, 66
SsiI CCGC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 3 cut(s) 91, 153, 161
TaqI TCGA 2 cut(s) 233, 311
TasI AATT 2 cut(s) 36, 66
TatI WGTACW 1 cut(s) 314
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 17, 198
TspGWI ACGGA 1 cut(s) 264
XhoI CTCGAG 2 cut(s) 232, 310
XmiI GTMKAC 1 cut(s) 339
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.