Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018309

Physical Location & Seq

Genomic Coordinates Reverse (-)

33045930 .. 33068144

Gene Structure 22215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGAACTTGTCATCTCTTGTAGTAGCACACACAAGTTTCCTACTTGTGATTTTCTTCATTCTAATTTTGACAAGCACAAGCCTACGTGTGACGCCTCATCCTTCAAATCTTCAAAAACAAATTGCAGCTGCTTCTACATACAATAGGGATGACGTCCGGACGTATCTTCAGAAAGGAGGAAAGAAAGAAGTAGGAACAAAGGTGGAAATGGAACTATACCCGACCGGAACCGGGTCGAGCTTGCCGGACTGTTCACACGCCTGCGGGCCGTGCTTTCCATGCAAAAGGGTGATGGTGAGCTTCAGTAAGTGCTCCAGTACTTCGGAATCATGCCCGATTGTCTACAGGCTTGAAGATGTGGGTAAGCCAAAGGCTGAGGTTGCTGCAGGACGAGTAATGCAAAGAGTTGCTGGGGTTAACATCGTTCCGCACTTCTGCCGGATTGAGGACAAAGTGCTTGACTTTTACAGCAATTTCAGCATCATTGCTCTTGGTCTCGATTCAATTGAAGCTCGGAGCTATATAAATTCTGTTGCTTGTAGCTTTCTTGTGTATGATGCTGATGATAAACCCCAAGAAGAAACCGTCAAACCCATGGTCGATGGTGGGACTGAAGTGTGGTCTCTGCATGTTGATATGAAGTATTGGTGCAAAAGGTATAATGGTGCAGAAGGCCTCCACACGAAAGTGACCGAGTTTGTCAGGGACAAAGACTGTCTTGTATGTGGCCCAGGTGTTCTTATTGAGCTGGACACCTCAGTTACTTTGCAAAAGATCGGAATCAGATGCTTTGAGGCTGCTGAGATTCATTTATGCTTCAAGCCCAGGACATTGACAGCGCATATGAAGGTAAGAATGTGGAACTTTGCCAGAGGATATGGAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0046982 GO:0046983 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

E2_bind ThiF

Protein Analysis

297

Amino Acids

33.08

Weight (kDa)

8.35

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	78 - 117	4.6e-08	Epidermal patterning factor proteins
ThiF	PF00899	114 - 214	2.7e-12	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34245
fragaria_vesca	FvH4_2g12460
malus_domestica	MD00G1078200.v1.1
prunus_persica	Prupe.8G050100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0272891
rosa_laevigata	RLG00000013657
rosa_roxburghii	Rroxscaffold_7G00195940
rosa_samantha	Rh6AG186900 Rh6DG181000
rosa_wichuraiana	Rw6G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	2 cut(s)	267, 431
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	3 cut(s)	155, 289, 636
AcyI	GRCGYC	2 cut(s)	95, 156
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	234, 448
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	6 cut(s)	108, 116, 356, 507, 512, 823
AjnI	CCWGG	2 cut(s)	733, 827
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	7 cut(s)	131, 243, 303, 515, 522, 546, 751
AluI	AGCT	7 cut(s)	131, 243, 303, 515, 522, 546, 751
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	503, 630
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	3 cut(s)	269, 676, 730
ApeKI	GCWGC	4 cut(s)	128, 131, 386, 800
ApoI	RAATTY	1 cut(s)	529
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	269, 731
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	304, 310
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	4 cut(s)	118, 140, 373, 787
BccI	CCATC	2 cut(s)	289, 599
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	2 cut(s)	735, 829
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	503, 630
BfaI	CTAG	1 cut(s)	892
BfmI	CTRYAG	2 cut(s)	346, 387
BisI	GCNGC	4 cut(s)	129, 132, 387, 801
BlsI	GCNGC	4 cut(s)	130, 133, 388, 802
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	235, 735, 829
BmgT120I	GGNCC	2 cut(s)	269, 731
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	3 cut(s)	235, 735, 829
BmsI	GCATC	3 cut(s)	492, 550, 779
BpmI	CTGGAG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	782
BsaHI	GRCGYC	2 cut(s)	95, 156
BsaI	GGTCTC	2 cut(s)	503, 630
BsaJI	CCNNGG	3 cut(s)	597, 733, 827
BsaWI	WCCGGW	2 cut(s)	159, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 448
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	782
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	735, 829
BseDI	CCNNGG	3 cut(s)	597, 733, 827
BseGI	GGATG	2 cut(s)	100, 157
BseJI	GATNNNNATC	1 cut(s)	782
BseLI	CCNNNNNNNGG	2 cut(s)	234, 448
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	369, 774, 795
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	118, 140, 373, 787
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	690
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	271, 678, 732
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	160, 228, 234, 248, 442
BslFI	GGGAC	2 cut(s)	625, 722
BslI	CCNNNNNNNGG	2 cut(s)	234, 448
BsmAI	GTCTC	2 cut(s)	503, 630
BsmFI	GGGAC	2 cut(s)	625, 722
BsnI	GGCC	3 cut(s)	271, 678, 732
Bso31I	GGTCTC	2 cut(s)	503, 630
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	777
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	2 cut(s)	267, 431
BspANI	GGCC	3 cut(s)	271, 678, 732
BspCNI	CTCAG	3 cut(s)	370, 773, 796
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	391
BspTNI	GGTCTC	2 cut(s)	503, 630
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	597, 733, 827
BssMI	GATC	1 cut(s)	777
BssNI	GRCGYC	2 cut(s)	95, 156
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	735, 829
Bst4CI	ACNGT	3 cut(s)	254, 589, 719
BstACI	GRCGYC	2 cut(s)	95, 156
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	245, 265, 269
BstDEI	CTNAG	3 cut(s)	378, 760, 804
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	100, 157
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	1 cut(s)	780
BstMAI	GTCTC	2 cut(s)	503, 630
BstMBI	GATC	1 cut(s)	777
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 282, 383, 480
BstNI	CCWGG	2 cut(s)	735, 829
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	233, 733, 827
BstSFI	CTRYAG	2 cut(s)	346, 387
BstV1I	GCAGC	4 cut(s)	118, 140, 373, 787
BsuRI	GGCC	3 cut(s)	271, 678, 732
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	100, 157
Cac8I	GCNNGC	3 cut(s)	245, 265, 269
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	2 cut(s)	269, 731
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	321
CviAII	CATG	4 cut(s)	282, 333, 598, 632
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	3 cut(s)	378, 760, 804
DpnI	GATC	1 cut(s)	779
DpnII	GATC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	678
Eco31I	GGTCTC	2 cut(s)	503, 630
Eco57I	CTGAAG	3 cut(s)	155, 289, 636
EcoRII	CCWGG	2 cut(s)	733, 827
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	285, 336, 601, 635
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	2 cut(s)	625, 722
FatI	CATG	4 cut(s)	281, 332, 597, 631
FauI	CCCGC	1 cut(s)	260
FauNDI	CATATG	1 cut(s)	846
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	129, 132, 387, 801
FokI	GGATG	2 cut(s)	87, 164
Fsp4HI	GCNGC	4 cut(s)	129, 132, 387, 801
FspBI	CTAG	1 cut(s)	892
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	4 cut(s)	129, 132, 387, 801
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	3 cut(s)	271, 678, 732
HapII	CCGG	5 cut(s)	160, 228, 234, 248, 442
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	844
Hin1I	GRCGYC	2 cut(s)	95, 156
Hin1II	CATG	4 cut(s)	285, 336, 601, 635
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	4 cut(s)	329, 503, 783, 808
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	5 cut(s)	160, 228, 234, 248, 442
HphI	GGTGA	2 cut(s)	304, 310
Hpy166II	GTNNAC	3 cut(s)	257, 346, 421
Hpy188I	TCNGA	5 cut(s)	174, 328, 519, 782, 788
Hpy188III	TCNNGA	2 cut(s)	160, 500
Hpy8I	GTNNAC	3 cut(s)	257, 346, 421
HpyAV	CCTTC	3 cut(s)	114, 668, 844
HpyCH4III	ACNGT	3 cut(s)	254, 589, 719
HpyCH4IV	ACGT	3 cut(s)	88, 156, 164
HpyCH4V	TGCA	8 cut(s)	128, 285, 389, 403, 631, 654, 671, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 282, 383, 480
HpyF3I	CTNAG	3 cut(s)	378, 760, 804
HpySE526I	ACGT	3 cut(s)	88, 156, 164
Hsp92I	GRCGYC	2 cut(s)	95, 156
Hsp92II	CATG	4 cut(s)	285, 336, 601, 635
HspAI	GCGC	1 cut(s)	842
Kpn2I	TCCGGA	1 cut(s)	159
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	777
LmnI	GCTCC	2 cut(s)	320, 519
Lsp1109I	GCAGC	4 cut(s)	118, 140, 373, 787
LweI	GCATC	3 cut(s)	492, 550, 779
MaeI	CTAG	1 cut(s)	892
MaeII	ACGT	3 cut(s)	88, 156, 164
MaeIII	GTNAC	3 cut(s)	91, 691, 763
MalI	GATC	1 cut(s)	779
MboI	GATC	1 cut(s)	777
MboII	GAAGA	6 cut(s)	16, 49, 104, 161, 368, 593
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	5 cut(s)	66, 123, 475, 507, 529
MnlI	CCTC	8 cut(s)	108, 173, 373, 442, 689, 769, 790, 869
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	5 cut(s)	160, 228, 234, 248, 442
MspR9I	CCNGG	3 cut(s)	235, 735, 829
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	735, 829
MwoI	GCNNNNNNNGC	4 cut(s)	273, 282, 383, 480
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	1 cut(s)	777
NlaIII	CATG	4 cut(s)	285, 336, 601, 635
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	91, 691
NspI	RCATGY	1 cut(s)	635
OliI	CACNNNNGTG	1 cut(s)	689
PceI	AGGCCT	1 cut(s)	678
PfeI	GAWTC	4 cut(s)	329, 503, 783, 808
PkrI	GCNGC	4 cut(s)	130, 133, 388, 802
Ppu21I	YACGTR	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	733, 827
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	733, 827
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	269, 731
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	4 cut(s)	129, 132, 387, 801
Sau3AI	GATC	1 cut(s)	777
Sau96I	GGNCC	2 cut(s)	269, 731
ScaI	AGTACT	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	235, 735, 829
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	492, 550, 779
SfcI	CTRYAG	2 cut(s)	346, 387
SmiMI	CAYNNNNRTG	1 cut(s)	689
Sse9I	AATT	5 cut(s)	66, 123, 475, 507, 529
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	2 cut(s)	267, 431
SspMI	CTAG	1 cut(s)	892
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	3 cut(s)	233, 733, 827
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	254, 589, 719
TaiI	ACGT	3 cut(s)	91, 159, 167
TaqI	TCGA	3 cut(s)	239, 501, 603
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	5 cut(s)	66, 123, 475, 507, 529
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	4 cut(s)	329, 503, 783, 808
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	2 cut(s)	91, 691
TseI	GCWGC	4 cut(s)	128, 131, 386, 800
Tsp45I	GTSAC	2 cut(s)	91, 691
TspDTI	ATGAA	5 cut(s)	17, 49, 656, 800, 863
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	892
ZraI	GACGTC	1 cut(s)	157
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.