Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009031

Physical Location & Seq

Genomic Coordinates Forward (+)

12964986 .. 12966113

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGACAATCGGGAAGAGTCCGATCTTGCTACATCATCATGTTATCTTCCTATTGTTGCTTGTTCTCCAAGTCAGTGGCCAGCATCAGCCTAGAACCACTGCTCCACCGTATATTGCCCAAAGACCAAATCAAGTACCCGCAGTAATCATTGCGATGCTTATGTTCACGCTCTTATTCAGCATGTTGGCTTGTTGTGTTTGTTATAAATACACAAACACATCTCCTCATGGAACCAGCTCTGATACCGAAGAGGGAGGTCATGGAGAAGTAGCGTTTACAAGGAGAACAAGCCGTGGACTTGGAAAGGATGTGATAAATTCGTTTCCTTCCTTTCTTTACTCACAAGTTAAAGGGCTAAAGATAGGCAAAGGCGGTGTGGAATGTGCGATCTGCCTGAATGAGTTTGAGGACGAGGAAACGCTGCGTTTAATGCCTCCTTGTAGCCATGCATTTCATGCTAGTTGCATTGATGTCTGGCTGTCTTCTCGGTCCACATGTCCAGTTTGCCGTGCAAGTCTCCCTCCCAAACCAGGCAGCGATCAAAACTCTTTGTATCCATTTATACGCCCACATGATAATCAAGATATGGATCTTGAAAATGTAACCGCGCGAAGAAGTGTATTGGAGTCTCCAGATGTACGTTTGCTAGATAGATTGTCATGGAGCAATAACACCGGGGCAAATACACCGCCTCGATCGAGGTCTACAGGGTTATCAAACTGGAGAATAACGGAGCTTTTGTTCCCAAGATCCCATTCGACTGGACATTCTCTAGTACCACGTGTAGAAAACCTTGACAGATTCACATTGCAGTTACCGGAAGAAGTACGAAGGCAACTGAGCCACATGAAGACGTTACCACAAGCTAGGAGTTCAAGAGAAGGCTATAGGAGTGGTAGCGTTGGAAGCGAGAGAAGAGGAAAAGGCAAGGAAAAAGAGTTTGGTGAAGGGTCATTTGATCGCCTTAAGGCAGAGATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033273 GO:0033591 GO:0033993 GO:0034284 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

328

Amino Acids

36.63

Weight (kDa)

8.98

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	128 - 171	3.7e-15	Ring finger domain
zf-RING_11	PF17123	128 - 157	7.4e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	128 - 170	1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	128 - 171	2.6e-06	zinc-RING finger domain
zf-C3HC4	PF00097	129 - 170	4.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	129 - 168	3e-07	RING-type zinc-finger
zf-rbx1	PF12678	135 - 171	1.9e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35330 AT2G34990 AT2G34990 AT2G35000
fragaria_vesca	FvH4_5g36230
malus_domestica	MD08G1190600.v1.1 MD15G1377900.v1.1
prunus_persica	Prupe.1G524600_v2.0.a1
pyrus_communis	pycom08g16380 pycom15g33890
rosa_chinensis	RchiOBHm_Chr7g0238061
rosa_laevigata	RLG00000000944
rosa_multiflora	Rmu_co8161516.1_g000001 Rmu_sc0002586.1_g000017 Rmu_sc0024940.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223410
rosa_rugosa	Rorug07G0310300.1
rosa_samantha	Rh7AG465500 Rh7BG436500 Rh7CG483800 Rh7DG452200
rosa_wichuraiana	Rw7G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	2 cut(s)	611, 613
AciI	CCGC	4 cut(s)	141, 375, 609, 692
AclWI	GGATC	2 cut(s)	600, 747
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	319
AcvI	CACGTG	1 cut(s)	785
AfaI	GTAC	4 cut(s)	138, 642, 780, 831
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflII	CTTAAG	1 cut(s)	968
AflIII	ACRYGT	2 cut(s)	497, 784
AgsI	TTSAA	2 cut(s)	599, 879
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	4 cut(s)	742, 774, 927, 959
AloI	GAACNNNNNNTCC	4 cut(s)	88, 120, 728, 760
AluBI	AGCT	3 cut(s)	240, 739, 869
AluI	AGCT	3 cut(s)	240, 739, 869
Alw26I	GTCTC	2 cut(s)	524, 636
AlwI	GGATC	2 cut(s)	600, 747
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	424, 537
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	1 cut(s)	959
AvaII	GGWCC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	81
BbrPI	CACGTG	1 cut(s)	785
BbsI	GAAGAC	2 cut(s)	477, 860
BbvI	GCAGC	2 cut(s)	411, 549
BccI	CCATC	1 cut(s)	973
BceAI	ACGGC	2 cut(s)	279, 495
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	524, 636
BfaI	CTAG	5 cut(s)	93, 462, 650, 776, 870
BfmI	CTRYAG	2 cut(s)	708, 889
BfrI	CTTAAG	1 cut(s)	968
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	425, 538
BlsI	GCNGC	2 cut(s)	426, 539
Bme1390I	CCNGG	2 cut(s)	534, 679
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	534, 679
BmsI	GCATC	2 cut(s)	94, 147
BpiI	GAAGAC	2 cut(s)	477, 860
BpmI	CTGGAG	2 cut(s)	618, 745
BpuMI	CCSGG	1 cut(s)	679
BsaAI	YACGTR	1 cut(s)	785
BsaBI	GATNNNNATC	2 cut(s)	8, 591
BsaJI	CCNNGG	2 cut(s)	295, 678
BsaWI	WCCGGW	1 cut(s)	820
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 728, 758
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	3 cut(s)	503, 728, 769
Bse3DI	GCAATG	2 cut(s)	150, 809
Bse8I	GATNNNNATC	2 cut(s)	8, 591
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	295, 678
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	2 cut(s)	8, 591
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	2 cut(s)	150, 809
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	3 cut(s)	503, 728, 769
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	411, 549
Bsh1236I	CGCG	2 cut(s)	611, 613
Bsh1285I	CGRYCG	1 cut(s)	701
BshFI	GGCC	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	678, 821
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	2 cut(s)	524, 636
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
BspACI	CCGC	4 cut(s)	141, 375, 609, 692
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	834
BspFNI	CGCG	2 cut(s)	611, 613
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	600, 747
BspTI	CTTAAG	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	150, 809
BsrI	ACTGG	3 cut(s)	503, 728, 769
BssECI	CCNNGG	2 cut(s)	295, 678
BssMI	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	3 cut(s)	11, 246, 913
BstAFI	CTTAAG	1 cut(s)	968
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	842
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	2 cut(s)	611, 613
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	7 cut(s)	27, 393, 544, 595, 701, 755, 964
BstMAI	GTCTC	2 cut(s)	524, 636
BstMBI	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
BstMCI	CGRYCG	1 cut(s)	701
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 458, 909
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	2 cut(s)	187, 501
BstSCI	CCNGG	2 cut(s)	532, 677
BstSFI	CTRYAG	2 cut(s)	708, 889
BstUI	CGCG	2 cut(s)	611, 613
BstV1I	GCAGC	2 cut(s)	411, 549
BstV2I	GAAGAC	2 cut(s)	477, 860
BstX2I	RGATCY	2 cut(s)	592, 752
BstXI	CCANNNNNNTGG	2 cut(s)	77, 764
BstYI	RGATCY	2 cut(s)	592, 752
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	82, 99
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	492
Csp6I	GTAC	4 cut(s)	137, 641, 779, 830
CviQI	GTAC	4 cut(s)	137, 641, 779, 830
DdeI	CTNAG	1 cut(s)	842
DpnI	GATC	7 cut(s)	26, 392, 543, 594, 700, 754, 963
DpnII	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	3 cut(s)	11, 246, 913
EarI	CTCTTC	3 cut(s)	11, 246, 913
Eco47I	GGWCC	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	454
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	2 cut(s)	425, 538
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	425, 538
FspBI	CTAG	5 cut(s)	93, 462, 650, 776, 870
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	2 cut(s)	425, 538
GsuI	CTGGAG	2 cut(s)	618, 745
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	678, 821
HhaI	GCGC	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HinfI	GANTC	3 cut(s)	19, 629, 804
HpaII	CCGG	2 cut(s)	678, 821
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	5 cut(s)	168, 279, 299, 495, 708
Hpy188I	TCNGA	2 cut(s)	24, 244
Hpy188III	TCNNGA	5 cut(s)	13, 584, 596, 635, 879
Hpy8I	GTNNAC	5 cut(s)	168, 279, 299, 495, 708
HpyAV	CCTTC	4 cut(s)	339, 828, 878, 944
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	3 cut(s)	643, 784, 857
HpyCH4V	TGCA	4 cut(s)	452, 468, 515, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 458, 909
HpyF3I	CTNAG	1 cut(s)	842
HpySE526I	ACGT	3 cut(s)	643, 784, 857
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
LmnI	GCTCC	3 cut(s)	109, 666, 736
Lsp1109I	GCAGC	2 cut(s)	411, 549
LweI	GCATC	2 cut(s)	94, 147
MaeI	CTAG	5 cut(s)	93, 462, 650, 776, 870
MaeII	ACGT	3 cut(s)	643, 784, 857
MaeIII	GTNAC	3 cut(s)	604, 816, 858
MalI	GATC	7 cut(s)	26, 392, 543, 594, 700, 754, 963
MboI	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
MboII	GAAGA	8 cut(s)	28, 40, 263, 477, 627, 836, 865, 930
MflI	RGATCY	2 cut(s)	592, 752
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	1 cut(s)	319
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	2 cut(s)	28, 638
MmeI	TCCRAC	1 cut(s)	886
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	3 cut(s)	351, 431, 969
MslI	CAYNNNNRTG	2 cut(s)	39, 155
Msp20I	TGGCCA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	968
MspI	CCGG	2 cut(s)	678, 821
MspR9I	CCNGG	2 cut(s)	534, 679
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	2 cut(s)	611, 613
MwoI	GCNNNNNNNGC	3 cut(s)	433, 458, 909
NciI	CCSGG	1 cut(s)	679
NdeII	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
NlaIV	GGNNCC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	187, 501
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	804
PkrI	GCNGC	2 cut(s)	426, 539
Ple19I	CGATCG	1 cut(s)	701
PleI	GAGTC	2 cut(s)	27, 637
PmaCI	CACGTG	1 cut(s)	785
PmlI	CACGTG	1 cut(s)	785
PpsI	GAGTC	2 cut(s)	27, 637
Ppu21I	YACGTR	1 cut(s)	785
PscI	ACATGT	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	532
PspCI	CACGTG	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	492
PsuI	RGATCY	2 cut(s)	592, 752
PvuI	CGATCG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	138, 642, 780, 831
RsaNI	GTAC	4 cut(s)	137, 641, 779, 830
RseI	CAYNNNNRTG	2 cut(s)	39, 155
SaqAI	TTAA	3 cut(s)	351, 431, 969
SatI	GCNGC	2 cut(s)	425, 538
Sau3AI	GATC	7 cut(s)	24, 390, 541, 592, 698, 752, 961
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	2 cut(s)	28, 638
ScrFI	CCNGG	2 cut(s)	534, 679
SetI	ASST	9 cut(s)	242, 262, 646, 707, 741, 787, 798, 860, 871
SfaNI	GCATC	2 cut(s)	94, 147
SfcI	CTRYAG	2 cut(s)	708, 889
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	39, 155
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	4 cut(s)	141, 375, 609, 692
SspMI	CTAG	5 cut(s)	93, 462, 650, 776, 870
StyD4I	CCNGG	2 cut(s)	532, 677
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	3 cut(s)	646, 787, 860
TaqI	TCGA	3 cut(s)	697, 701, 761
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	804
Tru1I	TTAA	3 cut(s)	351, 431, 969
Tru9I	TTAA	3 cut(s)	351, 431, 969
TscAI	CASTG	2 cut(s)	82, 106
TseI	GCWGC	2 cut(s)	424, 537
TspDTI	ATGAA	2 cut(s)	446, 866
TspGWI	ACGGA	1 cut(s)	749
TspRI	CASTG	2 cut(s)	82, 106
Vha464I	CTTAAG	1 cut(s)	968
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	2 cut(s)	187, 501
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	5 cut(s)	93, 462, 650, 776, 870
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.