Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161516.1

Orthogroup ID

OG0009031

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 662

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

gcccagacccagaccaaaaatatcccaacagaaacccagaaaaactggcttgatgagattcttaggtttcaagtatggtgtcctctggatggtcatcttcctcctcctctcgcagcagatcaccgcccagaacacaacccagaccggaccaacttcttcggcgccgaaattcgatatcaagatggcagttgtcatgatcgtcctggtggtcgtgtttttcattttggggtttctctccgtcttcacccgccaatgcgctcagacacgtctcgccggacgcgccgacctcgcgcgtgagcgcatgatggctcgcggcctcgaccctgccgtcatcgagactttccccgccttcctgttctccgacgtgaaggggctccaccttggcaaggactcgcttgaatgcgcggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

136

Amino Acids

15.19

Weight (kDa)

10.48

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35330 AT2G34990 AT2G34990 AT2G35000
fragaria_vesca	FvH4_5g36230
malus_domestica	MD08G1190600.v1.1 MD15G1377900.v1.1
prunus_persica	Prupe.1G524600_v2.0.a1
pyrus_communis	pycom08g16380 pycom15g33890
rosa_chinensis	RchiOBHm_Chr7g0238061
rosa_laevigata	RLG00000000944
rosa_multiflora	Rmu_co8161516.1_g000001 Rmu_sc0002586.1_g000017 Rmu_sc0024940.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223410
rosa_rugosa	Rorug07G0310300.1
rosa_samantha	Rh7AG465500 Rh7BG436500 Rh7CG483800 Rh7DG452200
rosa_wichuraiana	Rw7G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	5 cut(s)	280, 291, 293, 313, 405
AciI	CCGC	5 cut(s)	124, 248, 313, 346, 405
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	89, 386
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	71, 399
AjiI	CACGTC	2 cut(s)	267, 365
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	273, 330
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	6 cut(s)	164, 258, 282, 293, 301, 405
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	113, 236
AvaII	GGWCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	3 cut(s)	83, 176, 299
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	273, 330
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	114, 314
BlsI	GCNGC	2 cut(s)	115, 315
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	147
BmgBI	CACGTC	2 cut(s)	267, 365
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	163, 375
BmrFI	CCNGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 386
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	89, 386
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	93, 96
BseXI	GCAGC	1 cut(s)	125
Bsh1236I	CGCG	5 cut(s)	280, 291, 293, 313, 405
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	145, 274
BslI	CCNNNNNNNGG	2 cut(s)	89, 386
BsmAI	GTCTC	2 cut(s)	273, 330
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	118, 196
BspACI	CCGC	5 cut(s)	124, 248, 313, 346, 405
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	5 cut(s)	280, 291, 293, 313, 405
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	163, 375
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	118, 196
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	62, 259
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	5 cut(s)	280, 291, 293, 313, 405
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	6 cut(s)	164, 258, 282, 293, 301, 405
BstKTI	GATC	2 cut(s)	121, 199
BstMAI	GTCTC	2 cut(s)	273, 330
BstMBI	GATC	2 cut(s)	118, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 288
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	5 cut(s)	280, 291, 293, 313, 405
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	316
BtrI	CACGTC	2 cut(s)	267, 365
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	6 cut(s)	164, 258, 282, 293, 301, 405
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	1 cut(s)	286
CviAII	CATG	2 cut(s)	194, 302
CviJI	RGCY	4 cut(s)	49, 309, 316, 374
CviKI_1	RGCY	4 cut(s)	49, 309, 316, 374
DdeI	CTNAG	2 cut(s)	62, 259
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	2 cut(s)	120, 198
DpnII	GATC	2 cut(s)	118, 196
DrdI	GACNNNNNNGTC	1 cut(s)	327
DseDI	GACNNNNNNGTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	2 cut(s)	197, 305
FaiI	YATR	3 cut(s)	76, 195, 303
FatI	CATG	2 cut(s)	193, 301
FauI	CCCGC	2 cut(s)	255, 353
Fnu4HI	GCNGC	2 cut(s)	114, 314
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	2 cut(s)	114, 314
GlaI	GCGC	6 cut(s)	163, 257, 281, 292, 300, 404
GluI	GCNGC	2 cut(s)	114, 314
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	2 cut(s)	145, 274
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	6 cut(s)	164, 258, 282, 293, 301, 405
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	197, 305
Hin6I	GCGC	6 cut(s)	162, 256, 280, 291, 299, 403
HinP1I	GCGC	6 cut(s)	162, 256, 280, 291, 299, 403
HinfI	GANTC	2 cut(s)	58, 390
HpaII	CCGG	2 cut(s)	145, 274
HphI	GGTGA	2 cut(s)	113, 236
Hpy188I	TCNGA	2 cut(s)	262, 362
Hpy188III	TCNNGA	4 cut(s)	86, 179, 194, 335
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	2 cut(s)	359, 362
HpyCH4IV	ACGT	2 cut(s)	266, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 288
HpyF3I	CTNAG	2 cut(s)	62, 259
HpySE526I	ACGT	2 cut(s)	266, 364
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	197, 305
HspAI	GCGC	6 cut(s)	162, 256, 280, 291, 299, 403
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	118, 196
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	125
MaeII	ACGT	2 cut(s)	266, 364
MalI	GATC	2 cut(s)	120, 198
MboI	GATC	2 cut(s)	118, 196
MboII	GAAGA	3 cut(s)	89, 148, 233
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	1 cut(s)	168
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	93, 111, 114, 117, 297, 327
MspI	CCGG	2 cut(s)	145, 274
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	5 cut(s)	280, 291, 293, 313, 405
MwoI	GCNNNNNNNGC	2 cut(s)	279, 288
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	2 cut(s)	118, 196
NlaIII	CATG	2 cut(s)	197, 305
NlaIV	GGNNCC	2 cut(s)	163, 375
PagI	TCATGA	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	115, 315
PleI	GAGTC	1 cut(s)	384
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	163, 375
PspPI	GGNCC	1 cut(s)	147
SatI	GCNGC	2 cut(s)	114, 314
Sau3AI	GATC	2 cut(s)	118, 196
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	5 cut(s)	68, 269, 289, 367, 382
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	5 cut(s)	124, 248, 313, 346, 405
SspDI	GGCGCC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	380
TaiI	ACGT	2 cut(s)	269, 367
TaqI	TCGA	3 cut(s)	172, 319, 334
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.