AT2G35000

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14751541 .. 14753319
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35000.1

Sequence Viewer

Length: 1137 bp
ATGGCGATCCTCGACACAAAGTCCAGCCGTTGGATCCCACACAACCTTCTCTTTCTTCTCCTCTTGCTCTTGCTCCAGTCAGTACCGTATGGATTCGGTCAGACTCAGACCACACCACCCGGAACAACAAAAACGAAACCTAACGATCCAGTTGTTGTTGTAATCACGGTTTTGTTTTTAGTGATCTTTTTCATGGTCTTCGGTTCCATCTTCTGTCGTCGAAGCAACGCACAGTTTTCACGTTCTTCCATTTTCCGATCCACCGACGCAGACGCCGAGTCTCAGGTCGTCAGGATCAGGAGGTTGACGGCGCGTGGGCTCGACGCGGAGGCTATAGAAACTTTCCCGACGTTTCTTTACTCGGAGGTGAAGGCGGTGAGGATCGGGAAAGGTGGTGTGGAGTGTGCGGTTTGTCTCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATGCCTCCTTGTTGCCACGTGTTTCACGCCGATTGTGTTGACGTCTGGCTCTCAGAACACTCCACGTGTCCTCTCTGTAGAGCGGATCTTGTCCTAAACCAACAAGGTGACGACGACGACAGCACTGAAAGCTACTCGGGTACGGATCCAGGTACGATTTCGTCGAGTACGGATCCTGAGAGAGGAATGGTTTTGGAATCTTCGGACGCGCATTTGCTGGATGCTGTGACGTGGAGCAATAGTAACATAACACCTCGGTCAAAGTCAACGGGGTTATCCAGCTGGCAAATAACCGGAATTTTGTTCCCGAGATCGCACTCGACCGGACATTCGTTAATTCAACCGGCTGGGAATCTAGACCGGTTTACGTTGAGGTTACCGGATGATGTACGACGGCAACTTATGAAGACATCGAGGACGATGGGACACGTGGCGTTACTACCTCAGGCGAGGAGTTCACGGAGCGGTTATAGAAGCGGTAGCGTCGGGAGCGAGAGAAGCGCTTTCCCGTACGGACGTAAGAGTAATAATAACAATCGACGGCTTCATTCGCTGTCTTTTTCATTCTCTTTCCGGAGTGGTTCCGTACGGTCTACTTTCTCCGGAGATGCGCCGAAGAATCTTCCGACATCGATTGAAGCTGGTGAACGGTCTTTCGAACGGCTCCGACCAGATGAACGAGTGTAA

Protein Analysis

378

Amino Acids

41.88

Weight (kDa)

8.09

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 134 - 177 2.1e-13 Ring finger domain
zf-RING_11 PF17123 134 - 163 8.3e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 134 - 176 8.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 137 - 177 3.3e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 30
AccBSI CCGCTC 2 cut(s) 533, 915
AccI GTMKAC 1 cut(s) 1043
AccII CGCG 3 cut(s) 313, 326, 659
AccIII TCCGGA 2 cut(s) 1023, 1052
AciI CCGC 6 cut(s) 326, 374, 407, 533, 915, 927
AcsI RAATTY 2 cut(s) 422, 747
AcvI CACGTG 3 cut(s) 469, 516, 880
AcyI GRCGYC 2 cut(s) 273, 492
AfaI GTAC 7 cut(s) 84, 592, 604, 619, 840, 962, 1038
AfeI AGCGCT 1 cut(s) 952
AfiI CCNNNNNNNGG 2 cut(s) 30, 632
AflIII ACRYGT 3 cut(s) 468, 515, 877
AgeI ACCGGT 1 cut(s) 810
AgsI TTSAA 2 cut(s) 791, 1088
AhdI GACNNNNNGTC 2 cut(s) 19, 277
AjiI CACGTC 1 cut(s) 681
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 3 cut(s) 582, 732, 1091
AluI AGCT 3 cut(s) 582, 732, 1091
Alw26I GTCTC 2 cut(s) 285, 419
Ama87I CYCGRG 2 cut(s) 586, 757
Aor13HI TCCGGA 2 cut(s) 1023, 1052
Aor51HI AGCGCT 1 cut(s) 952
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 2 cut(s) 422, 747
ArsI GACNNNNNNTTYG 2 cut(s) 763, 795
AsiGI ACCGGT 1 cut(s) 810
AspLEI GCGC 4 cut(s) 313, 661, 953, 1063
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 4 cut(s) 379, 388, 569, 1106
AsuII TTCGAA 2 cut(s) 426, 1107
AvaI CYCGRG 2 cut(s) 586, 757
AxyI CCTNAGG 1 cut(s) 894
BamHI GGATCC 3 cut(s) 33, 595, 622
BanII GRGCYC 1 cut(s) 321
BbrPI CACGTG 3 cut(s) 469, 516, 880
BbsI GAAGAC 3 cut(s) 190, 435, 863
BbvI GCAGC 1 cut(s) 429
BccI CCATC 2 cut(s) 215, 865
BceAI ACGGC 5 cut(s) 12, 324, 860, 1007, 1127
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 285, 419
BfaI CTAG 1 cut(s) 806
BfmI CTRYAG 2 cut(s) 333, 526
BfoI RGCGCY 1 cut(s) 954
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
Bme1390I CCNGG 2 cut(s) 120, 600
BmeRI GACNNNNNGTC 2 cut(s) 19, 277
BmeT110I CYCGRG 2 cut(s) 586, 757
BmgBI CACGTC 1 cut(s) 681
BmiI GGNNCC 6 cut(s) 35, 205, 597, 624, 1033, 1115
BmrFI CCNGG 2 cut(s) 120, 600
BmsI GCATC 3 cut(s) 441, 661, 1048
BpiI GAAGAC 3 cut(s) 190, 435, 863
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 2 cut(s) 426, 1107
BpuMI CCSGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 1082
BsaAI YACGTR 3 cut(s) 469, 516, 880
BsaHI GRCGYC 2 cut(s) 273, 492
BsaJI CCNNGG 1 cut(s) 704
BsaWI WCCGGW 6 cut(s) 743, 773, 810, 829, 1023, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 632
Bse118I RCCGGY 2 cut(s) 793, 810
Bse1I ACTGG 2 cut(s) 76, 149
Bse21I CCTNAGG 1 cut(s) 894
BseAI TCCGGA 2 cut(s) 1023, 1052
BseBI CCWGG 1 cut(s) 600
BseCI ATCGAT 1 cut(s) 1082
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 2 cut(s) 676, 838
BseLI CCNNNNNNNGG 2 cut(s) 30, 632
BseMII CTCAG 5 cut(s) 119, 296, 516, 618, 908
BseNI ACTGG 2 cut(s) 76, 149
BseRI GAGGAG 2 cut(s) 50, 916
BseXI GCAGC 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 797
Bsh1236I CGCG 3 cut(s) 313, 326, 659
Bsh1285I CGRYCG 1 cut(s) 774
BshTI ACCGGT 1 cut(s) 810
BshVI ATCGAT 1 cut(s) 1082
BsiEI CGRYCG 1 cut(s) 774
BsiHKCI CYCGRG 2 cut(s) 586, 757
BsiSI CCGG 8 cut(s) 120, 744, 774, 794, 811, 830, 1024, 1053
BsiWI CGTACG 2 cut(s) 960, 1036
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 30, 632
BsmAI GTCTC 2 cut(s) 285, 419
BsmFI GGGAC 1 cut(s) 888
BsoBI CYCGRG 2 cut(s) 586, 757
Bsp119I TTCGAA 2 cut(s) 426, 1107
Bsp1286I GDGCHC 1 cut(s) 321
Bsp13I TCCGGA 2 cut(s) 1023, 1052
BspACI CCGC 6 cut(s) 326, 374, 407, 533, 915, 927
BspCNI CTCAG 5 cut(s) 118, 295, 515, 619, 907
BspDI ATCGAT 1 cut(s) 1082
BspEI TCCGGA 2 cut(s) 1023, 1052
BspFNI CGCG 3 cut(s) 313, 326, 659
BspLI GGNNCC 6 cut(s) 35, 205, 597, 624, 1033, 1115
BspT104I TTCGAA 2 cut(s) 426, 1107
BsrBI CCGCTC 2 cut(s) 533, 915
BsrFI RCCGGY 2 cut(s) 793, 810
BsrI ACTGG 2 cut(s) 76, 149
BssAI RCCGGY 2 cut(s) 793, 810
BssECI CCNNGG 1 cut(s) 704
BssNI GRCGYC 2 cut(s) 273, 492
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 5 cut(s) 87, 169, 234, 1041, 1101
BstACI GRCGYC 2 cut(s) 273, 492
BstBAI YACGTR 3 cut(s) 469, 516, 880
BstBI TTCGAA 2 cut(s) 426, 1107
BstC8I GCNNGC 1 cut(s) 734
BstDEI CTNAG 5 cut(s) 105, 282, 502, 627, 894
BstEII GGTNACC 1 cut(s) 825
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 676, 838
BstFNI CGCG 3 cut(s) 313, 326, 659
BstH2I RGCGCY 1 cut(s) 954
BstHHI GCGC 4 cut(s) 313, 661, 953, 1063
BstMAI GTCTC 2 cut(s) 285, 419
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 5 cut(s) 451, 579, 939, 948, 1000
BstNI CCWGG 1 cut(s) 600
BstPI GGTNACC 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 118, 598
BstSFI CTRYAG 2 cut(s) 333, 526
BstUI CGCG 3 cut(s) 313, 326, 659
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 3 cut(s) 190, 435, 863
BstX2I RGATCY 4 cut(s) 33, 535, 595, 622
BstYI RGATCY 4 cut(s) 33, 535, 595, 622
Bsu15I ATCGAT 1 cut(s) 1082
Bsu36I CCTNAGG 1 cut(s) 894
BsuTUI ATCGAT 1 cut(s) 1082
BtrI CACGTC 1 cut(s) 681
BtsCI GGATG 2 cut(s) 676, 838
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 734
CfoI GCGC 4 cut(s) 313, 661, 953, 1063
Cfr10I RCCGGY 2 cut(s) 793, 810
ClaI ATCGAT 1 cut(s) 1082
CseI GACGC 5 cut(s) 275, 281, 332, 665, 922
Csp6I GTAC 7 cut(s) 83, 591, 603, 618, 839, 961, 1037
CspAI ACCGGT 1 cut(s) 810
CviAII CATG 1 cut(s) 193
CviQI GTAC 7 cut(s) 83, 591, 603, 618, 839, 961, 1037
DdeI CTNAG 5 cut(s) 105, 282, 502, 627, 894
DriI GACNNNNNGTC 2 cut(s) 19, 277
Eam1105I GACNNNNNGTC 2 cut(s) 19, 277
Eco24I GRGCYC 1 cut(s) 321
Eco47III AGCGCT 1 cut(s) 952
Eco72I CACGTG 3 cut(s) 469, 516, 880
Eco81I CCTNAGG 1 cut(s) 894
Eco88I CYCGRG 2 cut(s) 586, 757
Eco91I GGTNACC 1 cut(s) 825
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO65I GGTNACC 1 cut(s) 825
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 1 cut(s) 196
FaiI YATR 6 cut(s) 90, 194, 335, 698, 854, 921
FaqI GGGAC 1 cut(s) 888
FatI CATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 1043
Fnu4HI GCNGC 1 cut(s) 443
FokI GGATG 2 cut(s) 683, 845
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 1 cut(s) 806
GlaI GCGC 4 cut(s) 312, 660, 952, 1062
GluI GCNGC 1 cut(s) 443
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 954
HapII CCGG 8 cut(s) 120, 744, 774, 794, 811, 830, 1024, 1053
HgaI GACGC 5 cut(s) 275, 281, 332, 665, 922
HhaI GCGC 4 cut(s) 313, 661, 953, 1063
Hin1I GRCGYC 2 cut(s) 273, 492
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 4 cut(s) 311, 659, 951, 1061
HinP1I GCGC 4 cut(s) 311, 659, 951, 1061
HincII GTYRAC 3 cut(s) 306, 490, 717
HindII GTYRAC 3 cut(s) 306, 490, 717
HinfI GANTC 6 cut(s) 93, 103, 278, 647, 802, 1069
HpaII CCGG 8 cut(s) 120, 744, 774, 794, 811, 830, 1024, 1053
HphI GGTGA 4 cut(s) 379, 388, 569, 1106
Hpy166II GTNNAC 7 cut(s) 306, 490, 717, 816, 908, 1044, 1097
Hpy188I TCNGA 8 cut(s) 102, 108, 257, 364, 505, 655, 1077, 1118
Hpy8I GTNNAC 7 cut(s) 306, 490, 717, 816, 908, 1044, 1097
HpyAV CCTTC 2 cut(s) 56, 364
HpyCH4III ACNGT 5 cut(s) 87, 169, 234, 1041, 1101
HpyCH4IV ACGT 9 cut(s) 241, 350, 468, 492, 515, 680, 818, 879, 967
HpyF10VI GCNNNNNNNGC 5 cut(s) 451, 579, 939, 948, 1000
HpyF3I CTNAG 5 cut(s) 105, 282, 502, 627, 894
HpySE526I ACGT 9 cut(s) 241, 350, 468, 492, 515, 680, 818, 879, 967
Hsp92I GRCGYC 2 cut(s) 273, 492
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 4 cut(s) 311, 659, 951, 1061
Kpn2I TCCGGA 2 cut(s) 1023, 1052
LmnI GCTCC 5 cut(s) 78, 684, 912, 939, 1119
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 3 cut(s) 441, 661, 1048
MaeI CTAG 1 cut(s) 806
MaeII ACGT 9 cut(s) 241, 350, 468, 492, 515, 680, 818, 879, 967
MaeIII GTNAC 5 cut(s) 557, 676, 692, 825, 885
MbiI CCGCTC 2 cut(s) 533, 915
MboII GAAGA 9 cut(s) 47, 190, 202, 237, 440, 642, 868, 1064, 1078
MflI RGATCY 4 cut(s) 33, 535, 595, 622
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 422, 747, 786
MlyI GAGTC 2 cut(s) 97, 287
MmeI TCCRAC 2 cut(s) 11, 1100
MroI TCCGGA 2 cut(s) 1023, 1052
MseI TTAA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 732
MspI CCGG 8 cut(s) 120, 744, 774, 794, 811, 830, 1024, 1053
MspR9I CCNGG 2 cut(s) 120, 600
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 3 cut(s) 313, 326, 659
MwoI GCNNNNNNNGC 5 cut(s) 451, 579, 939, 948, 1000
NciI CCSGG 1 cut(s) 120
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 6 cut(s) 35, 205, 597, 624, 1033, 1115
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 557, 676
NspV TTCGAA 2 cut(s) 426, 1107
PcsI WCGNNNNNNNCGW 3 cut(s) 273, 432, 611
PfeI GAWTC 4 cut(s) 93, 647, 802, 1069
Pfl23II CGTACG 2 cut(s) 960, 1036
PflMI CCANNNNNTGG 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 810
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 2 cut(s) 97, 286
PmaCI CACGTG 3 cut(s) 469, 516, 880
PmlI CACGTG 3 cut(s) 469, 516, 880
PpsI GAGTC 2 cut(s) 97, 286
Ppu21I YACGTR 3 cut(s) 469, 516, 880
Psp6I CCWGG 1 cut(s) 598
PspCI CACGTG 3 cut(s) 469, 516, 880
PspEI GGTNACC 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 1 cut(s) 598
PspLI CGTACG 2 cut(s) 960, 1036
PspN4I GGNNCC 6 cut(s) 35, 205, 597, 624, 1033, 1115
PsuI RGATCY 4 cut(s) 33, 535, 595, 622
PvuII CAGCTG 1 cut(s) 732
RsaI GTAC 7 cut(s) 84, 592, 604, 619, 840, 962, 1038
RsaNI GTAC 7 cut(s) 83, 591, 603, 618, 839, 961, 1037
SaqAI TTAA 1 cut(s) 785
SatI GCNGC 1 cut(s) 443
SchI GAGTC 2 cut(s) 97, 287
ScrFI CCNGG 2 cut(s) 120, 600
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 3 cut(s) 441, 661, 1048
SfcI CTRYAG 2 cut(s) 333, 526
SfuI TTCGAA 2 cut(s) 426, 1107
Sse9I AATT 3 cut(s) 422, 747, 786
SsiI CCGC 6 cut(s) 326, 374, 407, 533, 915, 927
SspMI CTAG 1 cut(s) 806
StyD4I CCNGG 2 cut(s) 118, 598
TaaI ACNGT 5 cut(s) 87, 169, 234, 1041, 1101
TaiI ACGT 9 cut(s) 244, 353, 471, 495, 518, 683, 821, 882, 970
TaqII GACCGA 2 cut(s) 86, 696
TasI AATT 3 cut(s) 422, 747, 786
TfiI GAWTC 4 cut(s) 93, 647, 802, 1069
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 557, 676
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 2 cut(s) 557, 676
TspDTI ATGAA 4 cut(s) 181, 869, 986, 1002
TspGWI ACGGA 5 cut(s) 608, 635, 925, 978, 1024
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 2 cut(s) 422, 747
XbaI TCTAGA 1 cut(s) 805
XmiI GTMKAC 1 cut(s) 1043
XspI CTAG 1 cut(s) 806
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.