E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35330 AT2G34990 AT2G34990 AT2G35000 |
| fragaria_vesca | FvH4_5g36230 |
| malus_domestica | MD08G1190600.v1.1 MD15G1377900.v1.1 |
| prunus_persica | Prupe.1G524600_v2.0.a1 |
| pyrus_communis | pycom08g16380 pycom15g33890 |
| rosa_chinensis | RchiOBHm_Chr7g0238061 |
| rosa_laevigata | RLG00000000944 |
| rosa_multiflora | Rmu_co8161516.1_g000001 Rmu_sc0002586.1_g000017 Rmu_sc0024940.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00223410 |
| rosa_rugosa | Rorug07G0310300.1 |
| rosa_samantha | Rh7AG465500 Rh7BG436500 Rh7CG483800 Rh7DG452200 |
| rosa_wichuraiana | Rw7G038560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 495 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 30 |
| AccBSI | CCGCTC | 2 cut(s) | 533, 915 |
| AccI | GTMKAC | 1 cut(s) | 1043 |
| AccII | CGCG | 3 cut(s) | 313, 326, 659 |
| AccIII | TCCGGA | 2 cut(s) | 1023, 1052 |
| AciI | CCGC | 6 cut(s) | 326, 374, 407, 533, 915, 927 |
| AcsI | RAATTY | 2 cut(s) | 422, 747 |
| AcvI | CACGTG | 3 cut(s) | 469, 516, 880 |
| AcyI | GRCGYC | 2 cut(s) | 273, 492 |
| AfaI | GTAC | 7 cut(s) | 84, 592, 604, 619, 840, 962, 1038 |
| AfeI | AGCGCT | 1 cut(s) | 952 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 30, 632 |
| AflIII | ACRYGT | 3 cut(s) | 468, 515, 877 |
| AgeI | ACCGGT | 1 cut(s) | 810 |
| AgsI | TTSAA | 2 cut(s) | 791, 1088 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 19, 277 |
| AjiI | CACGTC | 1 cut(s) | 681 |
| AjnI | CCWGG | 1 cut(s) | 598 |
| AluBI | AGCT | 3 cut(s) | 582, 732, 1091 |
| AluI | AGCT | 3 cut(s) | 582, 732, 1091 |
| Alw26I | GTCTC | 2 cut(s) | 285, 419 |
| Ama87I | CYCGRG | 2 cut(s) | 586, 757 |
| Aor13HI | TCCGGA | 2 cut(s) | 1023, 1052 |
| Aor51HI | AGCGCT | 1 cut(s) | 952 |
| ApeKI | GCWGC | 1 cut(s) | 442 |
| ApoI | RAATTY | 2 cut(s) | 422, 747 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 763, 795 |
| AsiGI | ACCGGT | 1 cut(s) | 810 |
| AspLEI | GCGC | 4 cut(s) | 313, 661, 953, 1063 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 4 cut(s) | 379, 388, 569, 1106 |
| AsuII | TTCGAA | 2 cut(s) | 426, 1107 |
| AvaI | CYCGRG | 2 cut(s) | 586, 757 |
| AxyI | CCTNAGG | 1 cut(s) | 894 |
| BamHI | GGATCC | 3 cut(s) | 33, 595, 622 |
| BanII | GRGCYC | 1 cut(s) | 321 |
| BbrPI | CACGTG | 3 cut(s) | 469, 516, 880 |
| BbsI | GAAGAC | 3 cut(s) | 190, 435, 863 |
| BbvI | GCAGC | 1 cut(s) | 429 |
| BccI | CCATC | 2 cut(s) | 215, 865 |
| BceAI | ACGGC | 5 cut(s) | 12, 324, 860, 1007, 1127 |
| BciT130I | CCWGG | 1 cut(s) | 600 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 2 cut(s) | 285, 419 |
| BfaI | CTAG | 1 cut(s) | 806 |
| BfmI | CTRYAG | 2 cut(s) | 333, 526 |
| BfoI | RGCGCY | 1 cut(s) | 954 |
| BisI | GCNGC | 1 cut(s) | 443 |
| BlsI | GCNGC | 1 cut(s) | 444 |
| Bme1390I | CCNGG | 2 cut(s) | 120, 600 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 19, 277 |
| BmeT110I | CYCGRG | 2 cut(s) | 586, 757 |
| BmgBI | CACGTC | 1 cut(s) | 681 |
| BmiI | GGNNCC | 6 cut(s) | 35, 205, 597, 624, 1033, 1115 |
| BmrFI | CCNGG | 2 cut(s) | 120, 600 |
| BmsI | GCATC | 3 cut(s) | 441, 661, 1048 |
| BpiI | GAAGAC | 3 cut(s) | 190, 435, 863 |
| BpmI | CTGGAG | 1 cut(s) | 59 |
| Bpu14I | TTCGAA | 2 cut(s) | 426, 1107 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| Bsa29I | ATCGAT | 1 cut(s) | 1082 |
| BsaAI | YACGTR | 3 cut(s) | 469, 516, 880 |
| BsaHI | GRCGYC | 2 cut(s) | 273, 492 |
| BsaJI | CCNNGG | 1 cut(s) | 704 |
| BsaWI | WCCGGW | 6 cut(s) | 743, 773, 810, 829, 1023, 1052 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 676, 706 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 30, 632 |
| Bse118I | RCCGGY | 2 cut(s) | 793, 810 |
| Bse1I | ACTGG | 2 cut(s) | 76, 149 |
| Bse21I | CCTNAGG | 1 cut(s) | 894 |
| BseAI | TCCGGA | 2 cut(s) | 1023, 1052 |
| BseBI | CCWGG | 1 cut(s) | 600 |
| BseCI | ATCGAT | 1 cut(s) | 1082 |
| BseDI | CCNNGG | 1 cut(s) | 704 |
| BseGI | GGATG | 2 cut(s) | 676, 838 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 30, 632 |
| BseMII | CTCAG | 5 cut(s) | 119, 296, 516, 618, 908 |
| BseNI | ACTGG | 2 cut(s) | 76, 149 |
| BseRI | GAGGAG | 2 cut(s) | 50, 916 |
| BseXI | GCAGC | 1 cut(s) | 429 |
| BseYI | CCCAGC | 1 cut(s) | 797 |
| Bsh1236I | CGCG | 3 cut(s) | 313, 326, 659 |
| Bsh1285I | CGRYCG | 1 cut(s) | 774 |
| BshTI | ACCGGT | 1 cut(s) | 810 |
| BshVI | ATCGAT | 1 cut(s) | 1082 |
| BsiEI | CGRYCG | 1 cut(s) | 774 |
| BsiHKCI | CYCGRG | 2 cut(s) | 586, 757 |
| BsiSI | CCGG | 8 cut(s) | 120, 744, 774, 794, 811, 830, 1024, 1053 |
| BsiWI | CGTACG | 2 cut(s) | 960, 1036 |
| BslFI | GGGAC | 1 cut(s) | 888 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 30, 632 |
| BsmAI | GTCTC | 2 cut(s) | 285, 419 |
| BsmFI | GGGAC | 1 cut(s) | 888 |
| BsoBI | CYCGRG | 2 cut(s) | 586, 757 |
| Bsp119I | TTCGAA | 2 cut(s) | 426, 1107 |
| Bsp1286I | GDGCHC | 1 cut(s) | 321 |
| Bsp13I | TCCGGA | 2 cut(s) | 1023, 1052 |
| BspACI | CCGC | 6 cut(s) | 326, 374, 407, 533, 915, 927 |
| BspCNI | CTCAG | 5 cut(s) | 118, 295, 515, 619, 907 |
| BspDI | ATCGAT | 1 cut(s) | 1082 |
| BspEI | TCCGGA | 2 cut(s) | 1023, 1052 |
| BspFNI | CGCG | 3 cut(s) | 313, 326, 659 |
| BspLI | GGNNCC | 6 cut(s) | 35, 205, 597, 624, 1033, 1115 |
| BspT104I | TTCGAA | 2 cut(s) | 426, 1107 |
| BsrBI | CCGCTC | 2 cut(s) | 533, 915 |
| BsrFI | RCCGGY | 2 cut(s) | 793, 810 |
| BsrI | ACTGG | 2 cut(s) | 76, 149 |
| BssAI | RCCGGY | 2 cut(s) | 793, 810 |
| BssECI | CCNNGG | 1 cut(s) | 704 |
| BssNI | GRCGYC | 2 cut(s) | 273, 492 |
| Bst2UI | CCWGG | 1 cut(s) | 600 |
| Bst4CI | ACNGT | 5 cut(s) | 87, 169, 234, 1041, 1101 |
| BstACI | GRCGYC | 2 cut(s) | 273, 492 |
| BstBAI | YACGTR | 3 cut(s) | 469, 516, 880 |
| BstBI | TTCGAA | 2 cut(s) | 426, 1107 |
| BstC8I | GCNNGC | 1 cut(s) | 734 |
| BstDEI | CTNAG | 5 cut(s) | 105, 282, 502, 627, 894 |
| BstEII | GGTNACC | 1 cut(s) | 825 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 2 cut(s) | 676, 838 |
| BstFNI | CGCG | 3 cut(s) | 313, 326, 659 |
| BstH2I | RGCGCY | 1 cut(s) | 954 |
| BstHHI | GCGC | 4 cut(s) | 313, 661, 953, 1063 |
| BstMAI | GTCTC | 2 cut(s) | 285, 419 |
| BstMCI | CGRYCG | 1 cut(s) | 774 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 451, 579, 939, 948, 1000 |
| BstNI | CCWGG | 1 cut(s) | 600 |
| BstPI | GGTNACC | 1 cut(s) | 825 |
| BstSCI | CCNGG | 2 cut(s) | 118, 598 |
| BstSFI | CTRYAG | 2 cut(s) | 333, 526 |
| BstUI | CGCG | 3 cut(s) | 313, 326, 659 |
| BstV1I | GCAGC | 1 cut(s) | 429 |
| BstV2I | GAAGAC | 3 cut(s) | 190, 435, 863 |
| BstX2I | RGATCY | 4 cut(s) | 33, 535, 595, 622 |
| BstYI | RGATCY | 4 cut(s) | 33, 535, 595, 622 |
| Bsu15I | ATCGAT | 1 cut(s) | 1082 |
| Bsu36I | CCTNAGG | 1 cut(s) | 894 |
| BsuTUI | ATCGAT | 1 cut(s) | 1082 |
| BtrI | CACGTC | 1 cut(s) | 681 |
| BtsCI | GGATG | 2 cut(s) | 676, 838 |
| BtsIMutI | CAGTG | 1 cut(s) | 573 |
| Cac8I | GCNNGC | 1 cut(s) | 734 |
| CfoI | GCGC | 4 cut(s) | 313, 661, 953, 1063 |
| Cfr10I | RCCGGY | 2 cut(s) | 793, 810 |
| ClaI | ATCGAT | 1 cut(s) | 1082 |
| CseI | GACGC | 5 cut(s) | 275, 281, 332, 665, 922 |
| Csp6I | GTAC | 7 cut(s) | 83, 591, 603, 618, 839, 961, 1037 |
| CspAI | ACCGGT | 1 cut(s) | 810 |
| CviAII | CATG | 1 cut(s) | 193 |
| CviQI | GTAC | 7 cut(s) | 83, 591, 603, 618, 839, 961, 1037 |
| DdeI | CTNAG | 5 cut(s) | 105, 282, 502, 627, 894 |
| DriI | GACNNNNNGTC | 2 cut(s) | 19, 277 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 19, 277 |
| Eco24I | GRGCYC | 1 cut(s) | 321 |
| Eco47III | AGCGCT | 1 cut(s) | 952 |
| Eco72I | CACGTG | 3 cut(s) | 469, 516, 880 |
| Eco81I | CCTNAGG | 1 cut(s) | 894 |
| Eco88I | CYCGRG | 2 cut(s) | 586, 757 |
| Eco91I | GGTNACC | 1 cut(s) | 825 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 630 |
| EcoO65I | GGTNACC | 1 cut(s) | 825 |
| EcoRI | GAATTC | 1 cut(s) | 422 |
| EcoRII | CCWGG | 1 cut(s) | 598 |
| EcoT38I | GRGCYC | 1 cut(s) | 321 |
| FaeI | CATG | 1 cut(s) | 196 |
| FaiI | YATR | 6 cut(s) | 90, 194, 335, 698, 854, 921 |
| FaqI | GGGAC | 1 cut(s) | 888 |
| FatI | CATG | 1 cut(s) | 192 |
| FblI | GTMKAC | 1 cut(s) | 1043 |
| Fnu4HI | GCNGC | 1 cut(s) | 443 |
| FokI | GGATG | 2 cut(s) | 683, 845 |
| FriOI | GRGCYC | 1 cut(s) | 321 |
| Fsp4HI | GCNGC | 1 cut(s) | 443 |
| FspBI | CTAG | 1 cut(s) | 806 |
| GlaI | GCGC | 4 cut(s) | 312, 660, 952, 1062 |
| GluI | GCNGC | 1 cut(s) | 443 |
| GsaI | CCCAGC | 1 cut(s) | 801 |
| GsuI | CTGGAG | 1 cut(s) | 59 |
| HaeII | RGCGCY | 1 cut(s) | 954 |
| HapII | CCGG | 8 cut(s) | 120, 744, 774, 794, 811, 830, 1024, 1053 |
| HgaI | GACGC | 5 cut(s) | 275, 281, 332, 665, 922 |
| HhaI | GCGC | 4 cut(s) | 313, 661, 953, 1063 |
| Hin1I | GRCGYC | 2 cut(s) | 273, 492 |
| Hin1II | CATG | 1 cut(s) | 196 |
| Hin6I | GCGC | 4 cut(s) | 311, 659, 951, 1061 |
| HinP1I | GCGC | 4 cut(s) | 311, 659, 951, 1061 |
| HincII | GTYRAC | 3 cut(s) | 306, 490, 717 |
| HindII | GTYRAC | 3 cut(s) | 306, 490, 717 |
| HinfI | GANTC | 6 cut(s) | 93, 103, 278, 647, 802, 1069 |
| HpaII | CCGG | 8 cut(s) | 120, 744, 774, 794, 811, 830, 1024, 1053 |
| HphI | GGTGA | 4 cut(s) | 379, 388, 569, 1106 |
| Hpy166II | GTNNAC | 7 cut(s) | 306, 490, 717, 816, 908, 1044, 1097 |
| Hpy188I | TCNGA | 8 cut(s) | 102, 108, 257, 364, 505, 655, 1077, 1118 |
| Hpy8I | GTNNAC | 7 cut(s) | 306, 490, 717, 816, 908, 1044, 1097 |
| HpyAV | CCTTC | 2 cut(s) | 56, 364 |
| HpyCH4III | ACNGT | 5 cut(s) | 87, 169, 234, 1041, 1101 |
| HpyCH4IV | ACGT | 9 cut(s) | 241, 350, 468, 492, 515, 680, 818, 879, 967 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 451, 579, 939, 948, 1000 |
| HpyF3I | CTNAG | 5 cut(s) | 105, 282, 502, 627, 894 |
| HpySE526I | ACGT | 9 cut(s) | 241, 350, 468, 492, 515, 680, 818, 879, 967 |
| Hsp92I | GRCGYC | 2 cut(s) | 273, 492 |
| Hsp92II | CATG | 1 cut(s) | 196 |
| HspAI | GCGC | 4 cut(s) | 311, 659, 951, 1061 |
| Kpn2I | TCCGGA | 2 cut(s) | 1023, 1052 |
| LmnI | GCTCC | 5 cut(s) | 78, 684, 912, 939, 1119 |
| Lsp1109I | GCAGC | 1 cut(s) | 429 |
| LweI | GCATC | 3 cut(s) | 441, 661, 1048 |
| MaeI | CTAG | 1 cut(s) | 806 |
| MaeII | ACGT | 9 cut(s) | 241, 350, 468, 492, 515, 680, 818, 879, 967 |
| MaeIII | GTNAC | 5 cut(s) | 557, 676, 692, 825, 885 |
| MbiI | CCGCTC | 2 cut(s) | 533, 915 |
| MboII | GAAGA | 9 cut(s) | 47, 190, 202, 237, 440, 642, 868, 1064, 1078 |
| MflI | RGATCY | 4 cut(s) | 33, 535, 595, 622 |
| MhlI | GDGCHC | 1 cut(s) | 321 |
| MluCI | AATT | 3 cut(s) | 422, 747, 786 |
| MlyI | GAGTC | 2 cut(s) | 97, 287 |
| MmeI | TCCRAC | 2 cut(s) | 11, 1100 |
| MroI | TCCGGA | 2 cut(s) | 1023, 1052 |
| MseI | TTAA | 1 cut(s) | 785 |
| MspA1I | CMGCKG | 1 cut(s) | 732 |
| MspI | CCGG | 8 cut(s) | 120, 744, 774, 794, 811, 830, 1024, 1053 |
| MspR9I | CCNGG | 2 cut(s) | 120, 600 |
| MvaI | CCWGG | 1 cut(s) | 600 |
| MvnI | CGCG | 3 cut(s) | 313, 326, 659 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 451, 579, 939, 948, 1000 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NlaIII | CATG | 1 cut(s) | 196 |
| NlaIV | GGNNCC | 6 cut(s) | 35, 205, 597, 624, 1033, 1115 |
| NmeAIII | GCCGAG | 1 cut(s) | 301 |
| NmuCI | GTSAC | 2 cut(s) | 557, 676 |
| NspV | TTCGAA | 2 cut(s) | 426, 1107 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 273, 432, 611 |
| PfeI | GAWTC | 4 cut(s) | 93, 647, 802, 1069 |
| Pfl23II | CGTACG | 2 cut(s) | 960, 1036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 30 |
| PinAI | ACCGGT | 1 cut(s) | 810 |
| PkrI | GCNGC | 1 cut(s) | 444 |
| PleI | GAGTC | 2 cut(s) | 97, 286 |
| PmaCI | CACGTG | 3 cut(s) | 469, 516, 880 |
| PmlI | CACGTG | 3 cut(s) | 469, 516, 880 |
| PpsI | GAGTC | 2 cut(s) | 97, 286 |
| Ppu21I | YACGTR | 3 cut(s) | 469, 516, 880 |
| Psp6I | CCWGG | 1 cut(s) | 598 |
| PspCI | CACGTG | 3 cut(s) | 469, 516, 880 |
| PspEI | GGTNACC | 1 cut(s) | 825 |
| PspFI | CCCAGC | 1 cut(s) | 797 |
| PspGI | CCWGG | 1 cut(s) | 598 |
| PspLI | CGTACG | 2 cut(s) | 960, 1036 |
| PspN4I | GGNNCC | 6 cut(s) | 35, 205, 597, 624, 1033, 1115 |
| PsuI | RGATCY | 4 cut(s) | 33, 535, 595, 622 |
| PvuII | CAGCTG | 1 cut(s) | 732 |
| RsaI | GTAC | 7 cut(s) | 84, 592, 604, 619, 840, 962, 1038 |
| RsaNI | GTAC | 7 cut(s) | 83, 591, 603, 618, 839, 961, 1037 |
| SaqAI | TTAA | 1 cut(s) | 785 |
| SatI | GCNGC | 1 cut(s) | 443 |
| SchI | GAGTC | 2 cut(s) | 97, 287 |
| ScrFI | CCNGG | 2 cut(s) | 120, 600 |
| SduI | GDGCHC | 1 cut(s) | 321 |
| SfaNI | GCATC | 3 cut(s) | 441, 661, 1048 |
| SfcI | CTRYAG | 2 cut(s) | 333, 526 |
| SfuI | TTCGAA | 2 cut(s) | 426, 1107 |
| Sse9I | AATT | 3 cut(s) | 422, 747, 786 |
| SsiI | CCGC | 6 cut(s) | 326, 374, 407, 533, 915, 927 |
| SspMI | CTAG | 1 cut(s) | 806 |
| StyD4I | CCNGG | 2 cut(s) | 118, 598 |
| TaaI | ACNGT | 5 cut(s) | 87, 169, 234, 1041, 1101 |
| TaiI | ACGT | 9 cut(s) | 244, 353, 471, 495, 518, 683, 821, 882, 970 |
| TaqII | GACCGA | 2 cut(s) | 86, 696 |
| TasI | AATT | 3 cut(s) | 422, 747, 786 |
| TfiI | GAWTC | 4 cut(s) | 93, 647, 802, 1069 |
| Tru1I | TTAA | 1 cut(s) | 785 |
| Tru9I | TTAA | 1 cut(s) | 785 |
| TscAI | CASTG | 1 cut(s) | 580 |
| TseFI | GTSAC | 2 cut(s) | 557, 676 |
| TseI | GCWGC | 1 cut(s) | 442 |
| Tsp45I | GTSAC | 2 cut(s) | 557, 676 |
| TspDTI | ATGAA | 4 cut(s) | 181, 869, 986, 1002 |
| TspGWI | ACGGA | 5 cut(s) | 608, 635, 925, 978, 1024 |
| TspRI | CASTG | 1 cut(s) | 580 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 30 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 630 |
| XapI | RAATTY | 2 cut(s) | 422, 747 |
| XbaI | TCTAGA | 1 cut(s) | 805 |
| XmiI | GTMKAC | 1 cut(s) | 1043 |
| XspI | CTAG | 1 cut(s) | 806 |
| ZraI | GACGTC | 1 cut(s) | 493 |