MD08G1190600.v1.1

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
24136626 .. 24137885
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1190600.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGAAATACAACATTCATGCCGTCTTGCTATGGATTCTCAGCTTCCTCCTGTTGTCGCAGCTGATCACAGCCCAAACCGCAGCGCCTTCTCCGCCGCAAGCCAACGGCTCAAGCTCGTCGAAATTCGACATCAAGATGGCGGTGGTGATGGTGGTTCTCGTACTTGTATTCTTCATCTTGGGCTTCCTCTCCGTCTACACCCGTCAGTGCGCCCAGACCCGCCTCCACGGGCGCATGGTTCGAAACGGTTCCCGCATGGCGCGTGGCCTTGACCCCGCCGTCATCGAAACCTTCCCCGCCTTCATATACTCCGATGTCAAGGCGCTCAAGCTCGGGCAGGACGCTCTTGAATGTGCCGTATGTTTACAGGAGTTTCAAGACCATGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTATTCCACCCTGATTGTATTGACACGTGGCTGCTCTCTCACTCGACTTGCCCGGTTTGCCGGACTTACCTGGTTCCTAAACCCGGAGAAGAGCCATACACTTGGGTTGATCCGACTGAAGAGGATATCGAGTCGGGTCAACCTGAGACTGGGCCGTGTACGGCAGAAGCACCCTCACCTCCACTACCGTCGCATATGCCACCCCGCCAAGTGTCAGTTCGGATGGTAGAAGATCAAATCAAAGAGGAGGAATCTCCATCTCCAGCACCTCCAGTGTTTATCAATTTGGTGAATGGAAGTGAGGCAACCAATCAAAGAGGCCCACCTCGGTCTAGGTCAACGGGTTTTGGACCGCCTCGGTCGAGATCAACGGGGATGCGGTTCACCGGGATATTATTTCCACGATCACATTCGACCGGACACTCGCTGGTTCAACCGGGTGAGAACGTCGAAAAGTTTACACTAAGATTACCGGACGAGGTACGGGCTCAACTTGTGAATTCAGCCTTGATTCGTAGCAGGAGTACCAACGTGGCATTCCCAAGGGCCGGCAGTGTGAGAAAAGGTTTAAGAAGTGAGAGTGGGCGTGGAAAAATCCCCGGTTTGTATGAACGGTCTGACCCAAGTTCGCGTTCGAACCGGTCGGGGCGATCGAGCCGCTGGGCTTTCTCATTGTTGCCGCCTTTTATGTCTCGGAACGGGTCCGTTAGGAACCAAGTTGGTGATAACGACGCTGCAACTGTGTCGGCAGCCGGGCCATCCGAATTGAATAGAGCACCGTTGGACAATAATGGTGGCGATCAACGATCAACTGATGCCTTGCGGCCGAAGGATCGTGTTTAA

Protein Analysis

420

Amino Acids

46.02

Weight (kDa)

9.04

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 117 - 160 1.4e-13 Ring finger domain
zf-RING_11 PF17123 117 - 146 5.3e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 117 - 159 6.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 118 - 159 6.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 120 - 160 5e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 195
AccII CGCG 2 cut(s) 262, 1048
AclWI GGATC 3 cut(s) 394, 521, 1257
AcoI YGGCCR 1 cut(s) 1241
AcsI RAATTY 2 cut(s) 122, 916
AcuI CTGAAG 1 cut(s) 555
AcvI CACGTG 1 cut(s) 444
AfaI GTAC 4 cut(s) 162, 577, 900, 943
AfiI CCNNNNNNNGG 3 cut(s) 500, 566, 965
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 1056
AgsI TTSAA 4 cut(s) 350, 377, 851, 1186
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 6 cut(s) 618, 650, 938, 970, 1033, 1065
AluBI AGCT 4 cut(s) 42, 61, 114, 331
AluI AGCT 4 cut(s) 42, 61, 114, 331
Alw21I GWGCWC 1 cut(s) 1195
Alw26I GTCTC 2 cut(s) 557, 1113
AlwI GGATC 3 cut(s) 394, 521, 1257
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 6 cut(s) 265, 569, 736, 963, 1172, 1241
ApeKI GCWGC 6 cut(s) 58, 80, 391, 448, 1151, 1166
ApoI RAATTY 2 cut(s) 122, 916
AsiGI ACCGGT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 247
AspLEI GCGC 5 cut(s) 85, 212, 234, 262, 325
AspS9I GGNCC 6 cut(s) 569, 737, 767, 963, 1119, 1172
AsuC2I CCSGG 6 cut(s) 470, 501, 805, 855, 1017, 1171
AsuHPI GGTGA 6 cut(s) 157, 585, 718, 793, 869, 1151
AsuII TTCGAA 2 cut(s) 241, 1052
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 767, 1119
BanII GRGCYC 1 cut(s) 907
BbrPI CACGTG 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 1195
BbvI GCAGC 6 cut(s) 70, 92, 378, 435, 1138, 1178
BccI CCATC 5 cut(s) 130, 142, 634, 682, 1183
BceAI ACGGC 6 cut(s) 5, 121, 263, 341, 556, 594
BcgI CGANNNNNNTGC 2 cut(s) 1143, 1177
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 6 cut(s) 470, 501, 805, 855, 1017, 1171
BcoDI GTCTC 2 cut(s) 557, 1113
BfaI CTAG 1 cut(s) 750
BfoI RGCGCY 2 cut(s) 86, 326
Bme1390I CCNGG 7 cut(s) 470, 488, 501, 805, 855, 1017, 1171
Bme18I GGWCC 2 cut(s) 767, 1119
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 6 cut(s) 569, 737, 767, 963, 1119, 1172
BmiI GGNNCC 4 cut(s) 250, 492, 1120, 1130
BmrFI CCNGG 7 cut(s) 470, 488, 501, 805, 855, 1017, 1171
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 783, 1222
BmuI ACTGGG 1 cut(s) 576
BpmI CTGGAG 2 cut(s) 663, 672
Bpu14I TTCGAA 2 cut(s) 241, 1052
BpuEI CTTGAG 2 cut(s) 94, 311
BpuMI CCSGG 6 cut(s) 470, 501, 805, 855, 1017, 1171
BsaAI YACGTR 2 cut(s) 418, 444
BsaJI CCNNGG 5 cut(s) 226, 743, 773, 959, 1015
BsaWI WCCGGW 3 cut(s) 833, 889, 1056
Bsc4I CCNNNNNNNGG 3 cut(s) 500, 566, 965
Bse118I RCCGGY 2 cut(s) 965, 1056
Bse1I ACTGG 2 cut(s) 571, 689
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 5 cut(s) 226, 743, 773, 959, 1015
BseGI GGATG 3 cut(s) 645, 798, 1175
BseLI CCNNNNNNNGG 3 cut(s) 500, 566, 965
BseMII CTCAG 2 cut(s) 52, 552
BseNI ACTGG 2 cut(s) 571, 689
BseRI GAGGAG 1 cut(s) 677
BseX3I CGGCCG 1 cut(s) 1241
BseXI GCAGC 6 cut(s) 70, 92, 378, 435, 1138, 1178
BseYI CCCAGC 1 cut(s) 1077
Bsh1236I CGCG 2 cut(s) 262, 1048
Bsh1285I CGRYCG 5 cut(s) 779, 834, 1061, 1070, 1244
BshFI GGCC 6 cut(s) 267, 571, 738, 965, 1174, 1243
BshTI ACCGGT 1 cut(s) 1056
BsiEI CGRYCG 5 cut(s) 779, 834, 1061, 1070, 1244
BsiHKAI GWGCWC 1 cut(s) 1195
BsiHKCI CYCGRG 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 500, 566, 965
BsmAI GTCTC 2 cut(s) 557, 1113
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 6 cut(s) 267, 571, 738, 965, 1174, 1243
BsoBI CYCGRG 1 cut(s) 332
Bsp119I TTCGAA 2 cut(s) 241, 1052
Bsp1286I GDGCHC 2 cut(s) 907, 1195
BspANI GGCC 6 cut(s) 267, 571, 738, 965, 1174, 1243
BspCNI CTCAG 2 cut(s) 51, 553
BspFNI CGCG 2 cut(s) 262, 1048
BspLI GGNNCC 4 cut(s) 250, 492, 1120, 1130
BspPI GGATC 3 cut(s) 394, 521, 1257
BspQI GCTCTTC 1 cut(s) 501
BspT104I TTCGAA 2 cut(s) 241, 1052
BsrFI RCCGGY 2 cut(s) 965, 1056
BsrI ACTGG 2 cut(s) 571, 689
BssAI RCCGGY 2 cut(s) 965, 1056
BssECI CCNNGG 5 cut(s) 226, 743, 773, 959, 1015
BssT1I CCWWGG 1 cut(s) 959
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 5 cut(s) 248, 606, 1032, 1159, 1197
Bst6I CTCTTC 2 cut(s) 501, 531
BstBAI YACGTR 2 cut(s) 418, 444
BstBI TTCGAA 2 cut(s) 241, 1052
BstC8I GCNNGC 2 cut(s) 99, 967
BstDEI CTNAG 3 cut(s) 38, 561, 881
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 3 cut(s) 645, 798, 1175
BstFNI CGCG 2 cut(s) 262, 1048
BstH2I RGCGCY 2 cut(s) 86, 326
BstHHI GCGC 5 cut(s) 85, 212, 234, 262, 325
BstMAI GTCTC 2 cut(s) 557, 1113
BstMCI CGRYCG 5 cut(s) 779, 834, 1061, 1070, 1244
BstMWI GCNNNNNNNGC 3 cut(s) 77, 91, 474
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 7 cut(s) 468, 486, 499, 803, 853, 1015, 1169
BstUI CGCG 2 cut(s) 262, 1048
BstV1I GCAGC 6 cut(s) 70, 92, 378, 435, 1138, 1178
BstXI CCANNNNNNTGG 1 cut(s) 519
BstZI CGGCCG 1 cut(s) 1241
BsuRI GGCC 6 cut(s) 267, 571, 738, 965, 1174, 1243
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 645, 798, 1175
BtsI GCAGTG 1 cut(s) 976
BtsIMutI CAGTG 3 cut(s) 212, 696, 976
Cac8I GCNNGC 2 cut(s) 99, 967
CfoI GCGC 5 cut(s) 85, 212, 234, 262, 325
Cfr10I RCCGGY 2 cut(s) 965, 1056
Cfr13I GGNCC 6 cut(s) 569, 737, 767, 963, 1119, 1172
CseI GACGC 2 cut(s) 350, 1157
CsiI ACCWGGT 1 cut(s) 486
Csp6I GTAC 4 cut(s) 161, 576, 899, 942
CspAI ACCGGT 1 cut(s) 1056
CspCI CAANNNNNGTGG 4 cut(s) 413, 448, 1192, 1227
CviAII CATG 4 cut(s) 17, 235, 256, 383
CviQI GTAC 4 cut(s) 161, 576, 899, 942
DdeI CTNAG 3 cut(s) 38, 561, 881
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 1241
EagI CGGCCG 1 cut(s) 1241
Eam1104I CTCTTC 2 cut(s) 501, 531
EarI CTCTTC 2 cut(s) 501, 531
EciI GGCGGA 1 cut(s) 81
EclXI CGGCCG 1 cut(s) 1241
Eco130I CCWWGG 1 cut(s) 959
Eco24I GRGCYC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 767, 1119
Eco52I CGGCCG 1 cut(s) 1241
Eco57I CTGAAG 1 cut(s) 555
Eco72I CACGTG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 959
EcoT38I GRGCYC 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 4 cut(s) 20, 238, 259, 386
FatI CATG 4 cut(s) 16, 234, 255, 382
FauI CCCGC 5 cut(s) 227, 260, 283, 304, 629
FauNDI CATATG 1 cut(s) 612
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 1 cut(s) 195
FokI GGATG 3 cut(s) 652, 805, 1162
FriOI GRGCYC 1 cut(s) 907
FspBI CTAG 1 cut(s) 750
GlaI GCGC 5 cut(s) 84, 211, 233, 261, 324
GsaI CCCAGC 1 cut(s) 1081
GsuI CTGGAG 2 cut(s) 663, 672
HaeII RGCGCY 2 cut(s) 86, 326
HaeIII GGCC 6 cut(s) 267, 571, 738, 965, 1174, 1243
HgaI GACGC 2 cut(s) 350, 1157
HhaI GCGC 5 cut(s) 85, 212, 234, 262, 325
Hin1II CATG 4 cut(s) 20, 238, 259, 386
Hin6I GCGC 5 cut(s) 83, 210, 232, 260, 323
HinP1I GCGC 5 cut(s) 83, 210, 232, 260, 323
HincII GTYRAC 2 cut(s) 557, 756
HindII GTYRAC 2 cut(s) 557, 756
HinfI GANTC 4 cut(s) 34, 548, 668, 928
HphI GGTGA 6 cut(s) 157, 585, 718, 793, 869, 1151
Hpy166II GTNNAC 7 cut(s) 196, 365, 557, 576, 756, 801, 876
Hpy188I TCNGA 6 cut(s) 313, 531, 639, 1036, 1113, 1180
Hpy188III TCNNGA 4 cut(s) 133, 347, 377, 780
Hpy8I GTNNAC 7 cut(s) 196, 365, 557, 576, 756, 801, 876
Hpy99I CGWCG 4 cut(s) 121, 610, 869, 1151
HpyAV CCTTC 4 cut(s) 96, 301, 310, 1240
HpyCH4III ACNGT 5 cut(s) 248, 606, 1032, 1159, 1197
HpyCH4IV ACGT 4 cut(s) 417, 443, 864, 948
HpyCH4V TGCA 1 cut(s) 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 91, 474
HpyF3I CTNAG 3 cut(s) 38, 561, 881
HpySE526I ACGT 4 cut(s) 417, 443, 864, 948
Hsp92II CATG 4 cut(s) 20, 238, 259, 386
HspAI GCGC 5 cut(s) 83, 210, 232, 260, 323
KroI GCCGGC 1 cut(s) 965
KroNI GCCGGC 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 501
Lsp1109I GCAGC 6 cut(s) 70, 92, 378, 435, 1138, 1178
LweI GCATC 2 cut(s) 783, 1222
MabI ACCWGGT 1 cut(s) 486
MaeI CTAG 1 cut(s) 750
MaeII ACGT 4 cut(s) 417, 443, 864, 948
MboII GAAGA 4 cut(s) 163, 518, 548, 659
MhlI GDGCHC 2 cut(s) 907, 1195
MluCI AATT 4 cut(s) 122, 700, 916, 1181
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 2 cut(s) 554, 1179
MroNI GCCGGC 1 cut(s) 965
MroXI GAANNNNTTC 1 cut(s) 247
MseI TTAA 2 cut(s) 986, 1258
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 61, 1077
MspR9I CCNGG 7 cut(s) 470, 488, 501, 805, 855, 1017, 1171
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 2 cut(s) 262, 1048
MwoI GCNNNNNNNGC 3 cut(s) 77, 91, 474
NaeI GCCGGC 1 cut(s) 967
NciI CCSGG 6 cut(s) 470, 501, 805, 855, 1017, 1171
NdeI CATATG 1 cut(s) 612
NgoMIV GCCGGC 1 cut(s) 965
NlaIII CATG 4 cut(s) 20, 238, 259, 386
NlaIV GGNNCC 4 cut(s) 250, 492, 1120, 1130
NspV TTCGAA 2 cut(s) 241, 1052
PciSI GCTCTTC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 1067
PctI GAATGC 1 cut(s) 953
PdiI GCCGGC 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 34, 668, 928
PinAI ACCGGT 1 cut(s) 1056
Ple19I CGATCG 1 cut(s) 1070
PleI GAGTC 1 cut(s) 556
PmaCI CACGTG 1 cut(s) 444
PmlI CACGTG 1 cut(s) 444
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 2 cut(s) 418, 444
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 4 cut(s) 250, 492, 1120, 1130
PspPI GGNCC 6 cut(s) 569, 737, 767, 963, 1119, 1172
PvuI CGATCG 1 cut(s) 1070
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 4 cut(s) 162, 577, 900, 943
RsaNI GTAC 4 cut(s) 161, 576, 899, 942
RseI CAYNNNNRTG 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 986, 1258
Sau96I GGNCC 6 cut(s) 569, 737, 767, 963, 1119, 1172
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 7 cut(s) 470, 488, 501, 805, 855, 1017, 1171
SduI GDGCHC 2 cut(s) 907, 1195
SexAI ACCWGGT 1 cut(s) 486
SfaNI GCATC 2 cut(s) 783, 1222
SfuI TTCGAA 2 cut(s) 241, 1052
SinI GGWCC 2 cut(s) 767, 1119
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 109, 326
SmoI CTYRAG 2 cut(s) 109, 326
Sse9I AATT 4 cut(s) 122, 700, 916, 1181
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 7 cut(s) 468, 486, 499, 803, 853, 1015, 1169
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 5 cut(s) 248, 606, 1032, 1159, 1197
TaiI ACGT 4 cut(s) 420, 446, 867, 951
TaqII GACCGA 2 cut(s) 735, 765
TasI AATT 4 cut(s) 122, 700, 916, 1181
TauI GCSGC 4 cut(s) 97, 1077, 1099, 1243
TfiI GAWTC 3 cut(s) 34, 668, 928
Tru1I TTAA 2 cut(s) 986, 1258
Tru9I TTAA 2 cut(s) 986, 1258
TscAI CASTG 3 cut(s) 212, 696, 976
TseI GCWGC 6 cut(s) 58, 80, 391, 448, 1151, 1166
TspDTI ATGAA 6 cut(s) 5, 17, 163, 292, 399, 1041
TspGWI ACGGA 2 cut(s) 181, 1111
TspRI CASTG 3 cut(s) 212, 696, 976
VpaK11BI GGWCC 2 cut(s) 767, 1119
XapI RAATTY 2 cut(s) 122, 916
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 247
XspI CTAG 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.