Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009031

Physical Location & Seq

Genomic Coordinates Reverse (-)

14750156 .. 14751326

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGCAGCCTGGAACCGAGATAAAAGCAAGCGACCTAACCCTACTAGTAATCACGATTATACTCTTCGCAATCTTCATCGTTGGCTTGGCTTCGGTTTGCTTCCGCTGGACCTCTCGCCAATTTTACTCACAAGAATCCATCAACCCTTTCACTGACTCCGACGTTGAATCCCGTACGAGTATTACGGCGGTGCGTGGGCTCGACGAGGCTATCATCAACTCATTTCCGACGTTTCTCTACTCGGAGGTGAAGGAGCGGAGAATCGGGATAGGTGGCGTCGAGTGTGCAGTGTGTATCTGTGAGTTCGAAGACCATGAAACGCTCCGTTTGATGCCTGAATGCTGCCACGTGTTTCATGCTGATTGTGTAAGTGTCTGGCTCTCTGATCACTCCACGTGTCCACTCTGTCGTGTGGATCTTTGCTTACAACCGGGTGAGAGAAGCTACTTGAATCCGGAACCGGATCTTGTAGAATCTACAAACTCGCATTTGTTTGATGGTGTGACGTGGACCAATAGGAACAGACCGTCTCGGTCATGGTCAACGAGATTGTCTCAATGTCGAGTCTCCCAGATATTAATCTCGAGATCGCATTCGACCGGACATTCTGTGGTTCAACCGCTAGATAATTTAGACCGGTTTACGCTTCGGTTACCAGAAGAAGTCCGGAGGCAACTGACGAAAAAAACGGTGGACAACGTGGCATTTTCTCAGGCTAGGAGCTCACGGCGTGGTTACAGAAGCAGAAGTGCCGGAAGCGAGAGGAGTGTCTTCTCGTACCAACGGCGGATGCATTCCTTCTCTGATTGTGCATGGTCCACCTCCTGTGGCGGAGAAGCGGTGGCTCCGTCAAAGGATTCCCGCCGAATATCAGTTGAACAATCCCAGCTAGATGATCGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

302

Amino Acids

34.17

Weight (kDa)

6.71

Isoelectric Point (pI)

67.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	95 - 138	1.8e-11	Ring finger domain
zf-RING_11	PF17123	95 - 124	7.4e-07	RING-like zinc finger
zf-rbx1	PF12678	99 - 138	2.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35330 AT2G34990 AT2G34990 AT2G35000
fragaria_vesca	FvH4_5g36230
malus_domestica	MD08G1190600.v1.1 MD15G1377900.v1.1
prunus_persica	Prupe.1G524600_v2.0.a1
pyrus_communis	pycom08g16380 pycom15g33890
rosa_chinensis	RchiOBHm_Chr7g0238061
rosa_laevigata	RLG00000000944
rosa_multiflora	Rmu_co8161516.1_g000001 Rmu_sc0002586.1_g000017 Rmu_sc0024940.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223410
rosa_rugosa	Rorug07G0310300.1
rosa_samantha	Rh7AG465500 Rh7BG436500 Rh7CG483800 Rh7DG452200
rosa_wichuraiana	Rw7G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AccIII	TCCGGA	2 cut(s)	457, 669
AciI	CCGC	8 cut(s)	106, 191, 259, 623, 790, 834, 842, 865
AclWI	GGATC	2 cut(s)	426, 474
AcvI	CACGTG	2 cut(s)	352, 399
AcyI	GRCGYC	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	734
AfaI	GTAC	2 cut(s)	178, 782
AflIII	ACRYGT	2 cut(s)	351, 398
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	170, 454, 620, 881
AhlI	ACTAGT	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	510
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	447, 726, 892
AluI	AGCT	3 cut(s)	447, 726, 892
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	3 cut(s)	537, 561, 574
AlwI	GGATC	2 cut(s)	426, 474
Ama87I	CYCGRG	1 cut(s)	586
Aor13HI	TCCGGA	2 cut(s)	457, 669
ApeKI	GCWGC	2 cut(s)	7, 345
AseI	ATTAAT	1 cut(s)	581
AsiGI	ACCGGT	1 cut(s)	639
AspS9I	GGNCC	3 cut(s)	111, 513, 819
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	262, 449
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	3 cut(s)	111, 513, 819
BanII	GRGCYC	2 cut(s)	204, 728
BbrPI	CACGTG	2 cut(s)	352, 399
BbsI	GAAGAC	2 cut(s)	318, 766
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	19, 332
BccI	CCATC	2 cut(s)	149, 494
BceAI	ACGGC	3 cut(s)	204, 746, 803
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	537, 561, 574
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	4 cut(s)	47, 626, 720, 893
BisI	GCNGC	2 cut(s)	8, 346
BlsI	GCNGC	2 cut(s)	9, 347
Bme1390I	CCNGG	2 cut(s)	12, 435
Bme18I	GGWCC	3 cut(s)	111, 513, 819
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	510
BmgT120I	GGNCC	3 cut(s)	111, 513, 819
BmiI	GGNNCC	3 cut(s)	16, 462, 849
BmrFI	CCNGG	2 cut(s)	12, 435
BmsI	GCATC	2 cut(s)	324, 783
BpiI	GAAGAC	2 cut(s)	318, 766
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
Bpu14I	TTCGAA	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	435
BsaAI	YACGTR	2 cut(s)	352, 399
BsaBI	GATNNNNATC	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	279
BsaWI	WCCGGW	5 cut(s)	457, 463, 602, 639, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bse118I	RCCGGY	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	581
BseAI	TCCGGA	2 cut(s)	457, 669
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	798
BseJI	GATNNNNATC	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	781
BseXI	GCAGC	2 cut(s)	19, 332
BseYI	CCCAGC	1 cut(s)	888
BsgI	GTGCAG	2 cut(s)	26, 309
Bsh1285I	CGRYCG	1 cut(s)	603
BshTI	ACCGGT	1 cut(s)	639
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	7 cut(s)	434, 458, 464, 603, 640, 670, 756
BsiWI	CGTACG	1 cut(s)	176
BsmAI	GTCTC	3 cut(s)	537, 561, 574
BsmBI	CGTCTC	1 cut(s)	537
BsmI	GAATGC	3 cut(s)	347, 595, 796
BsoBI	CYCGRG	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	204, 728
Bsp13I	TCCGGA	2 cut(s)	457, 669
Bsp143I	GATC	5 cut(s)	388, 418, 466, 590, 898
BspACI	CCGC	8 cut(s)	106, 191, 259, 623, 790, 834, 842, 865
BspCNI	CTCAG	1 cut(s)	727
BspEI	TCCGGA	2 cut(s)	457, 669
BspLI	GGNNCC	3 cut(s)	16, 462, 849
BspPI	GGATC	2 cut(s)	426, 474
BspT104I	TTCGAA	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	639
BssAI	RCCGGY	1 cut(s)	639
BssMI	GATC	5 cut(s)	388, 418, 466, 590, 898
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	531, 694
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	279
BstBAI	YACGTR	2 cut(s)	352, 399
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	714
BstEII	GGTNACC	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	798
BstKTI	GATC	5 cut(s)	391, 421, 469, 593, 901
BstMAI	GTCTC	3 cut(s)	537, 561, 574
BstMBI	GATC	5 cut(s)	388, 418, 466, 590, 898
BstMCI	CGRYCG	1 cut(s)	603
BstNI	CCWGG	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	10, 433
BstV1I	GCAGC	2 cut(s)	19, 332
BstV2I	GAAGAC	2 cut(s)	318, 766
BstX2I	RGATCY	2 cut(s)	418, 466
BstYI	RGATCY	2 cut(s)	418, 466
BtrI	CACGTC	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	798
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	153, 297
Cac8I	GCNNGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	3 cut(s)	111, 513, 819
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	177, 781
CspAI	ACCGGT	1 cut(s)	639
CviAII	CATG	4 cut(s)	317, 359, 540, 816
CviQI	GTAC	2 cut(s)	177, 781
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	5 cut(s)	390, 420, 468, 592, 900
DpnII	GATC	5 cut(s)	388, 418, 466, 590, 898
DraIII	CACNNNGTG	1 cut(s)	734
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	2 cut(s)	805, 849
Ecl136II	GAGCTC	1 cut(s)	726
Eco24I	GRGCYC	2 cut(s)	204, 728
Eco47I	GGWCC	3 cut(s)	111, 513, 819
Eco53kI	GAGCTC	1 cut(s)	726
Eco72I	CACGTG	2 cut(s)	352, 399
Eco88I	CYCGRG	1 cut(s)	586
Eco91I	GGTNACC	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	726
EcoO65I	GGTNACC	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	2 cut(s)	204, 728
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	4 cut(s)	320, 362, 543, 819
FaiI	YATR	5 cut(s)	62, 318, 360, 541, 817
FatI	CATG	4 cut(s)	316, 358, 539, 815
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	8, 346
FokI	GGATG	1 cut(s)	805
FriOI	GRGCYC	2 cut(s)	204, 728
Fsp4HI	GCNGC	2 cut(s)	8, 346
FspBI	CTAG	4 cut(s)	47, 626, 720, 893
GluI	GCNGC	2 cut(s)	8, 346
GsaI	CCCAGC	1 cut(s)	892
HapII	CCGG	7 cut(s)	434, 458, 464, 603, 640, 670, 756
HgaI	GACGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	320, 362, 543, 819
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	8 cut(s)	137, 158, 170, 264, 454, 476, 567, 860
HpaII	CCGG	7 cut(s)	434, 458, 464, 603, 640, 670, 756
HphI	GGTGA	2 cut(s)	262, 449
Hpy166II	GTNNAC	6 cut(s)	404, 513, 546, 645, 697, 822
Hpy188I	TCNGA	5 cut(s)	163, 231, 247, 388, 808
Hpy188III	TCNNGA	6 cut(s)	55, 268, 458, 586, 588, 670
Hpy8I	GTNNAC	6 cut(s)	404, 513, 546, 645, 697, 822
Hpy99I	CGWCG	4 cut(s)	167, 209, 235, 284
HpyAV	CCTTC	2 cut(s)	247, 811
HpyCH4III	ACNGT	2 cut(s)	531, 694
HpyCH4IV	ACGT	6 cut(s)	165, 233, 351, 398, 509, 702
HpyCH4V	TGCA	4 cut(s)	7, 290, 796, 815
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	6 cut(s)	165, 233, 351, 398, 509, 702
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	320, 362, 543, 819
Kpn2I	TCCGGA	2 cut(s)	457, 669
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	388, 418, 466, 590, 898
LmnI	GCTCC	4 cut(s)	256, 330, 723, 853
Lsp1109I	GCAGC	2 cut(s)	19, 332
LweI	GCATC	2 cut(s)	324, 783
MaeI	CTAG	4 cut(s)	47, 626, 720, 893
MaeII	ACGT	6 cut(s)	165, 233, 351, 398, 509, 702
MaeIII	GTNAC	3 cut(s)	505, 654, 737
MalI	GATC	5 cut(s)	390, 420, 468, 592, 900
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	5 cut(s)	388, 418, 466, 590, 898
MboII	GAAGA	5 cut(s)	58, 67, 323, 674, 766
MflI	RGATCY	2 cut(s)	418, 466
MhlI	GDGCHC	2 cut(s)	204, 728
MluCI	AATT	2 cut(s)	122, 631
MlyI	GAGTC	2 cut(s)	152, 576
MmeI	TCCRAC	2 cut(s)	186, 254
MnlI	CCTC	6 cut(s)	124, 202, 241, 666, 759, 835
Mph1103I	ATGCAT	1 cut(s)	798
MroI	TCCGGA	2 cut(s)	457, 669
MseI	TTAA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	7 cut(s)	434, 458, 464, 603, 640, 670, 756
MspR9I	CCNGG	2 cut(s)	12, 435
Mva1269I	GAATGC	3 cut(s)	347, 595, 796
MvaI	CCWGG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	5 cut(s)	388, 418, 466, 590, 898
NlaIII	CATG	4 cut(s)	320, 362, 543, 819
NlaIV	GGNNCC	3 cut(s)	16, 462, 849
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	798
NspV	TTCGAA	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	586
PctI	GAATGC	3 cut(s)	347, 595, 796
PfeI	GAWTC	6 cut(s)	137, 170, 264, 454, 476, 860
Pfl23II	CGTACG	1 cut(s)	176
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	2 cut(s)	9, 347
PleI	GAGTC	2 cut(s)	152, 575
PmaCI	CACGTG	2 cut(s)	352, 399
PmlI	CACGTG	2 cut(s)	352, 399
PpsI	GAGTC	2 cut(s)	152, 575
Ppu21I	YACGTR	2 cut(s)	352, 399
PshBI	ATTAAT	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	10
PspCI	CACGTG	2 cut(s)	352, 399
PspEI	GGTNACC	1 cut(s)	654
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	10
PspLI	CGTACG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	16, 462, 849
PspPI	GGNCC	3 cut(s)	111, 513, 819
PsuI	RGATCY	2 cut(s)	418, 466
RsaI	GTAC	2 cut(s)	178, 782
RsaNI	GTAC	2 cut(s)	177, 781
SacI	GAGCTC	1 cut(s)	728
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	2 cut(s)	8, 346
Sau3AI	GATC	5 cut(s)	388, 418, 466, 590, 898
Sau96I	GGNCC	3 cut(s)	111, 513, 819
SchI	GAGTC	2 cut(s)	152, 576
ScrFI	CCNGG	2 cut(s)	12, 435
SduI	GDGCHC	2 cut(s)	204, 728
SfaNI	GCATC	2 cut(s)	324, 783
Sfr274I	CTCGAG	1 cut(s)	586
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	3 cut(s)	111, 513, 819
SlaI	CTCGAG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	2 cut(s)	122, 631
SsiI	CCGC	8 cut(s)	106, 191, 259, 623, 790, 834, 842, 865
SspMI	CTAG	4 cut(s)	47, 626, 720, 893
SstI	GAGCTC	1 cut(s)	728
StyD4I	CCNGG	2 cut(s)	10, 433
TaaI	ACNGT	2 cut(s)	531, 694
TaiI	ACGT	6 cut(s)	168, 236, 354, 401, 512, 705
TaqI	TCGA	7 cut(s)	204, 282, 309, 565, 587, 599, 901
TaqII	GACCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	122, 631
TfiI	GAWTC	6 cut(s)	137, 170, 264, 454, 476, 860
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	2 cut(s)	160, 297
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	7, 345
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	67, 333, 347
TspGWI	ACGGA	2 cut(s)	317, 840
TspRI	CASTG	2 cut(s)	160, 297
VpaK11BI	GGWCC	3 cut(s)	111, 513, 819
VspI	ATTAAT	1 cut(s)	581
XhoI	CTCGAG	1 cut(s)	586
XspI	CTAG	4 cut(s)	47, 626, 720, 893
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.