AT1G43860

SBDS protein C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
16620769 .. 16624504
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43860.2

Sequence Viewer

Length: 1113 bp
ATGTCGAAGACGCTGGTGCAACCGGTAGGGCAAAAGAGGTTGACTAATGTTGCAGTGGTTCGTCTCAAAAAGCAAGGCAATCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCATGGCGGTCTGGCGTGGAGAAGGATATAGATGAAGTGCTACAGTCGCATACTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAATCGAAAGACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGTTCTCAAGCCAGTTTCGGGATATAGCAACGATTGTTATGCAGAAAACTATCAACCCTGAAACACAACGACCTTATACCATCAGCATGGTAGAGCGCCTAATGCATGAAATTCATTTTGCTGTTGATCCTCATAGTAATTCCAAGAAGCAGGCACTTGATGTCATCCGTGAGCTGCAAAAGCACTTCCCTATAAAGCGTTCTCCAATGAGACTGCGTCTTACTGTTCCTGTTCAAAATTTCCCCTCGCTTCTGGAGAAGCTAAAAGAATGGGATGGTAGTGTTGTCTCCAAAGACGAATCTGGAACACAGATGTCCACTGTCTGCGAGATGGAACCGGGCCTATTCCGAGAGTGTGATTCCCATGTGAGGAGTATCCAGGGAAGACTAGAAATACTCGCTGTATCAGTTCATGCAGAAGGTGACACAAGCATGGATCATTACGATGAGCATGATGATATGGCATTGCAAACCCACAAGCCGTTGTTACCTGCTGAGACTGAGACTAAGGATTTGACCGATCCCGTCGTTGAACTTAGCAAGAAACTGCAGAAGCAAGAGATAAGTACTACAGATAACATAAAGCAAGAAGGTGGAGAAGAAAAGAAGGGGACCAAGTGCAGCACTTGCAACACGTTCGTTGGAGAGGCTAAGCAATACAGAGAGCACTGTAAGAGTGATTGGCACAAACACAACCTTAAGCGTAAGACTCGGAAACTCCCTCCTATTAGTGCTGACGAATGCATGTCTGAGATTGACATGGACGACTCTAGAGCAGATTTGAAAGACTACTCTTTCTGA

Protein Analysis

370

Amino Acids

42.23

Weight (kDa)

6.93

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBDS_N PF01172 11 - 67 2.3e-15 Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
SBDS_domain_II PF09377 76 - 136 6.8e-26 SBDS protein, domain II
SBDS_C PF20268 139 - 203 2.3e-09 SBDS protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013196)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 811
AciI CCGC 1 cut(s) 124
AclWI GGATC 4 cut(s) 241, 434, 756, 827
AcsI RAATTY 2 cut(s) 423, 550
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 2 cut(s) 331, 681
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 945
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 180, 287, 548, 845, 1096
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 3 cut(s) 283, 487, 574
AluI AGCT 3 cut(s) 283, 487, 574
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 5 cut(s) 68, 517, 604, 803, 809
AlwI GGATC 4 cut(s) 241, 434, 756, 827
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 2 cut(s) 487, 933
ApoI RAATTY 2 cut(s) 423, 550
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
AsiGI ACCGGT 1 cut(s) 22
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 112, 652, 924
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 746
AsuII TTCGAA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 112, 924
BbsI GAAGAC 2 cut(s) 14, 703
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 474, 945
BccI CCATC 3 cut(s) 401, 581, 637
BceAI ACGGC 1 cut(s) 778
BcgI CGANNNNNNTGC 8 cut(s) 62, 67, 96, 101, 334, 368, 931, 965
BciT130I CCWGG 1 cut(s) 692
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 5 cut(s) 68, 517, 604, 803, 809
BfaI CTAG 2 cut(s) 701, 1083
BfmI CTRYAG 3 cut(s) 158, 860, 882
BfoI RGCGCY 1 cut(s) 412
BfrI CTTAAG 1 cut(s) 1010
BfuAI ACCTGC 1 cut(s) 811
BfuI GTATCC 1 cut(s) 698
BisI GCNGC 2 cut(s) 488, 934
BlpI GCTNAGC 1 cut(s) 963
BlsI GCNGC 2 cut(s) 489, 935
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 2 cut(s) 651, 692
Bme18I GGWCC 2 cut(s) 112, 924
BmgT120I GGNCC 3 cut(s) 112, 652, 924
BmiI GGNNCC 2 cut(s) 648, 925
BmrFI CCNGG 2 cut(s) 651, 692
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 14, 703
BpmI CTGGAG 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 963
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 691
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 681
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 776
BseBI CCWGG 1 cut(s) 692
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 691
BseGI GGATG 2 cut(s) 477, 592
BseLI CCNNNNNNNGG 2 cut(s) 331, 681
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 3 cut(s) 798, 804, 1053
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 697
BseXI GCAGC 2 cut(s) 474, 945
BsgI GTGCAG 1 cut(s) 952
BshFI GGCC 1 cut(s) 654
BshTI ACCGGT 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 23, 650
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 2 cut(s) 331, 681
BsmAI GTCTC 5 cut(s) 68, 517, 604, 803, 809
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 937
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 6 cut(s) 90, 233, 241, 439, 748, 832
Bsp1720I GCTNAGC 1 cut(s) 963
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 3 cut(s) 799, 805, 1054
BspDI ATCGAT 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 648, 925
BspMAI CTGCAG 1 cut(s) 864
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 4 cut(s) 241, 434, 756, 827
BspT104I TTCGAA 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 691
BssMI GATC 6 cut(s) 90, 233, 241, 439, 748, 832
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 6 cut(s) 162, 172, 315, 538, 634, 983
BstAFI CTTAAG 1 cut(s) 1010
BstAPI GCANNNNNTGC 1 cut(s) 939
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 6 cut(s) 807, 813, 819, 848, 963, 1062
BstF5I GGATG 2 cut(s) 477, 592
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 6 cut(s) 93, 236, 244, 442, 751, 835
BstMAI GTCTC 5 cut(s) 68, 517, 604, 803, 809
BstMBI GATC 6 cut(s) 90, 233, 241, 439, 748, 832
BstMWI GCNNNNNNNGC 4 cut(s) 163, 415, 493, 939
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 1 cut(s) 1060
BstSCI CCNGG 2 cut(s) 649, 690
BstSFI CTRYAG 3 cut(s) 158, 860, 882
BstV1I GCAGC 2 cut(s) 474, 945
BstV2I GAAGAC 2 cut(s) 14, 703
BstXI CCANNNNNNTGG 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 1 cut(s) 654
BsuTUI ATCGAT 1 cut(s) 261
BtsCI GGATG 2 cut(s) 477, 592
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 630, 979
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 1 cut(s) 465
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 112, 652, 924
ClaI ATCGAT 1 cut(s) 261
CseI GACGC 2 cut(s) 19, 518
Csp6I GTAC 1 cut(s) 879
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 9 cut(s) 120, 400, 419, 677, 725, 745, 764, 1057, 1072
CviJI RGCY 7 cut(s) 283, 324, 487, 574, 654, 793, 962
CviKI_1 RGCY 7 cut(s) 283, 324, 487, 574, 654, 793, 962
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 6 cut(s) 807, 813, 819, 848, 963, 1062
DpnI GATC 6 cut(s) 92, 235, 243, 441, 750, 834
DpnII GATC 6 cut(s) 90, 233, 241, 439, 748, 832
Eco47I GGWCC 2 cut(s) 112, 924
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 690
EcoT22I ATGCAT 3 cut(s) 260, 420, 1058
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 9 cut(s) 123, 403, 422, 680, 728, 748, 767, 1060, 1075
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 267, 299
FaqI GGGAC 1 cut(s) 937
FatI CATG 9 cut(s) 119, 399, 418, 676, 724, 744, 763, 1056, 1071
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 488, 934
FokI GGATG 2 cut(s) 464, 599
Fsp4HI GCNGC 2 cut(s) 488, 934
FspBI CTAG 2 cut(s) 701, 1083
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 488, 934
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 1 cut(s) 654
HapII CCGG 2 cut(s) 23, 650
HgaI GACGC 2 cut(s) 19, 518
HhaI GCGC 1 cut(s) 411
Hin1II CATG 9 cut(s) 123, 403, 422, 680, 728, 748, 767, 1060, 1075
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 5 cut(s) 308, 611, 671, 1021, 1079
HpaII CCGG 2 cut(s) 23, 650
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 2 cut(s) 42, 630
Hpy188I TCNGA 5 cut(s) 238, 662, 1026, 1063, 1112
Hpy188III TCNNGA 5 cut(s) 88, 332, 566, 615, 1083
Hpy8I GTNNAC 2 cut(s) 42, 630
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 4 cut(s) 133, 725, 896, 913
HpyCH4III ACNGT 6 cut(s) 162, 172, 315, 538, 634, 983
HpyCH4IV ACGT 1 cut(s) 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 415, 493, 939
HpyF3I CTNAG 6 cut(s) 807, 813, 819, 848, 963, 1062
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 9 cut(s) 123, 403, 422, 680, 728, 748, 767, 1060, 1075
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 6 cut(s) 90, 233, 241, 439, 748, 832
Lsp1109I GCAGC 2 cut(s) 474, 945
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 701, 1083
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 3 cut(s) 98, 734, 798
MalI GATC 6 cut(s) 92, 235, 243, 441, 750, 834
MboI GATC 6 cut(s) 90, 233, 241, 439, 748, 832
MboII GAAGA 3 cut(s) 19, 708, 923
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 3 cut(s) 423, 451, 550
MlyI GAGTC 2 cut(s) 1015, 1073
MmeI TCCRAC 1 cut(s) 934
MnlI CCTC 6 cut(s) 30, 453, 568, 675, 952, 1044
Mph1103I ATGCAT 3 cut(s) 260, 420, 1058
MseI TTAA 1 cut(s) 1011
MslI CAYNNNNRTG 3 cut(s) 398, 743, 756
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 2 cut(s) 23, 650
MspR9I CCNGG 2 cut(s) 651, 692
Mva1269I GAATGC 1 cut(s) 1058
MvaI CCWGG 1 cut(s) 692
MwoI GCNNNNNNNGC 4 cut(s) 163, 415, 493, 939
NciI CCSGG 1 cut(s) 651
NdeII GATC 6 cut(s) 90, 233, 241, 439, 748, 832
NlaIII CATG 9 cut(s) 123, 403, 422, 680, 728, 748, 767, 1060, 1075
NlaIV GGNNCC 2 cut(s) 648, 925
NmuCI GTSAC 1 cut(s) 734
NsiI ATGCAT 3 cut(s) 260, 420, 1058
NspI RCATGY 1 cut(s) 1060
NspV TTCGAA 1 cut(s) 188
PctI GAATGC 1 cut(s) 1058
PfeI GAWTC 3 cut(s) 308, 611, 671
PflFI GACNNNGTC 1 cut(s) 528
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 2 cut(s) 489, 935
PleI GAGTC 2 cut(s) 1015, 1073
PpsI GAGTC 2 cut(s) 1015, 1073
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 2 cut(s) 648, 925
PspPI GGNCC 3 cut(s) 112, 652, 924
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 864
PsyI GACNNNGTC 1 cut(s) 528
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
RseI CAYNNNNRTG 3 cut(s) 398, 743, 756
SaqAI TTAA 1 cut(s) 1011
SatI GCNGC 2 cut(s) 488, 934
Sau3AI GATC 6 cut(s) 90, 233, 241, 439, 748, 832
Sau96I GGNCC 3 cut(s) 112, 652, 924
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 2 cut(s) 1015, 1073
ScrFI CCNGG 2 cut(s) 651, 692
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 3 cut(s) 158, 860, 882
SfuI TTCGAA 1 cut(s) 188
SinI GGWCC 2 cut(s) 112, 924
SmiMI CAYNNNNRTG 3 cut(s) 398, 743, 756
SmlI CTYRAG 2 cut(s) 319, 1010
SmoI CTYRAG 2 cut(s) 319, 1010
Sse9I AATT 3 cut(s) 423, 451, 550
SsiI CCGC 1 cut(s) 124
SspMI CTAG 2 cut(s) 701, 1083
StyD4I CCNGG 2 cut(s) 649, 690
TaaI ACNGT 6 cut(s) 162, 172, 315, 538, 634, 983
TaiI ACGT 1 cut(s) 950
TaqI TCGA 5 cut(s) 5, 87, 188, 209, 261
TaqII GACCGA 1 cut(s) 845
TasI AATT 3 cut(s) 423, 451, 550
TatI WGTACW 1 cut(s) 878
TfiI GAWTC 3 cut(s) 308, 611, 671
Tru1I TTAA 1 cut(s) 1011
Tru9I TTAA 1 cut(s) 1011
TscAI CASTG 3 cut(s) 60, 637, 986
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 2 cut(s) 487, 933
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 6 cut(s) 108, 165, 236, 416, 435, 713
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 3 cut(s) 60, 637, 986
Tth111I GACNNNGTC 1 cut(s) 528
Vha464I CTTAAG 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 112, 924
XapI RAATTY 2 cut(s) 423, 550
XbaI TCTAGA 1 cut(s) 1082
XceI RCATGY 1 cut(s) 1060
XspI CTAG 2 cut(s) 701, 1083
ZrmI AGTACT 1 cut(s) 880
Zsp2I ATGCAT 3 cut(s) 260, 420, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.