Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013196

Physical Location & Seq

Genomic Coordinates Forward (+)

849217 .. 850618

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCAGAAAACCTATAATCCTGAAACCCGACGCCCTTACACTATTAGCTTGATTGAGAGTCTAATGCATGAAATTCACTTTGCTGTAGACCCACATAAAAGCTCGAAGAAGCAGGCTCTGGAAGTTATTCATGAGCTTCAGAAGCACTTCCCAATCAAACGGTCCCCAATGAGATTGCGACTCATAGTTCCTGACCATGAATTTTCATCTCTTTCGGAGAAGCTGACTGCCTGGAATGCTAGCATAATTTCTAAAGATCAATCTGGAAGTCAGATATCTACTATTTGTGAATTGGACCCTGGTTTTTATCGTGAATGTGAGGGATTGATGATGAAGTTGCATGGTAGATATGAAGTTCTTGCACTCTCTGTGCATGCAGAGGGTGACACTGTTATCGATCAATATGATGATCATGAGGATGAACCGTCACACTCACTCAAAGATTCCTCAAACATCAGTTCATTAAAGAAAAAAGAATGTACTGATCCTGACTTGTCGAAAAAAGAGTCGGCTGATCCTGTGCTAAAATTGAGCGATGATTTGCAGAAACAGAGCATCTCTACTGGGAGTGGAAATGCTGCAGCGGAGGGAAAGCAGAACAGATGCAGCACATGCAATGCATTCGTGGGCGATTCCAAGCAGTATAGGGATCACTTCAAGAGTGAGTGGCACAAGCATAACTTGAAACGCAAAACCAGACAACTTCCTCCCCTTACCGAAGAAGAGTGTGCAGCTGACATGGAAATGGACGACTACAAAGCCGATTTGAGGGATTATTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

262

Amino Acids

29.84

Weight (kDa)

5.91

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43860 AT1G43860
fragaria_vesca	FvH4_2g15010
malus_domestica	MD05G1011400.v1.1 MD05G1011500.v1.1
prunus_persica	Prupe.8G016400_v2.0.a1
pyrus_communis	pycom05g00670
rosa_chinensis	RchiOBHm_Chr6g0277561
rosa_laevigata	RLG00000013292
rosa_multiflora	Rmu_sc0001846.1_g000029 Rmu_sc0003910.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191210
rosa_rugosa	Rorug06G0109600
rosa_samantha	Rh6AG220100 Rh6BG224000 Rh6CG226300 Rh6DG216900
rosa_wichuraiana	Rw6G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	3 cut(s)	479, 509, 657
AcsI	RAATTY	2 cut(s)	72, 200
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	31
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	768
AgsI	TTSAA	2 cut(s)	658, 685
AjnI	CCWGG	2 cut(s)	230, 298
AluBI	AGCT	5 cut(s)	48, 102, 136, 223, 734
AluI	AGCT	5 cut(s)	48, 102, 136, 223, 734
AlwI	GGATC	3 cut(s)	479, 509, 657
AlwNI	CAGNNNCTG	1 cut(s)	118
ApeKI	GCWGC	4 cut(s)	578, 581, 606, 731
ApoI	RAATTY	2 cut(s)	72, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp700I	GAANNNNTTC	2 cut(s)	126, 146
AspS9I	GGNCC	2 cut(s)	162, 295
AsuHPI	GGTGA	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	162, 295
BbvI	GCAGC	4 cut(s)	565, 593, 618, 743
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	232, 300
BclI	TGATCA	1 cut(s)	409
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	84, 579
BisI	GCNGC	4 cut(s)	579, 582, 607, 732
BlsI	GCNGC	4 cut(s)	580, 583, 608, 733
Bme1390I	CCNGG	2 cut(s)	232, 300
Bme18I	GGWCC	2 cut(s)	162, 295
BmgT120I	GGNCC	2 cut(s)	162, 295
BmiI	GGNNCC	2 cut(s)	164, 297
BmrFI	CCNGG	2 cut(s)	232, 300
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	564, 593
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	232, 300
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	622
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	4 cut(s)	565, 593, 618, 743
BsgI	GTGCAG	1 cut(s)	750
BshVI	ATCGAT	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	2 cut(s)	241, 620
Bsp143I	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
BspACI	CCGC	1 cut(s)	584
BspDI	ATCGAT	1 cut(s)	396
BspHI	TCATGA	2 cut(s)	130, 412
BspLI	GGNNCC	2 cut(s)	164, 297
BspMAI	CTGCAG	1 cut(s)	583
BspOI	GCTAGC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	479, 509, 657
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
BssNI	GRCGYC	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	232, 300
Bst4CI	ACNGT	3 cut(s)	162, 391, 426
Bst6I	CTCTTC	1 cut(s)	717
BstACI	GRCGYC	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	612
BstC8I	GCNNGC	3 cut(s)	114, 241, 375
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	6 cut(s)	259, 400, 412, 487, 517, 652
BstMBI	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 236, 612
BstNI	CCWGG	2 cut(s)	232, 300
BstNSI	RCATGY	2 cut(s)	377, 615
BstSCI	CCNGG	2 cut(s)	230, 298
BstSFI	CTRYAG	2 cut(s)	84, 579
BstV1I	GCAGC	4 cut(s)	565, 593, 618, 743
Bsu15I	ATCGAT	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	3 cut(s)	114, 241, 375
CaiI	CAGNNNCTG	1 cut(s)	118
CciI	TCATGA	2 cut(s)	130, 412
Cfr13I	GGNCC	2 cut(s)	162, 295
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	8 cut(s)	68, 131, 197, 341, 374, 413, 612, 739
CviJI	RGCY	8 cut(s)	48, 102, 116, 136, 223, 512, 734, 761
CviKI_1	RGCY	8 cut(s)	48, 102, 116, 136, 223, 512, 734, 761
CviQI	GTAC	1 cut(s)	480
DpnI	GATC	6 cut(s)	258, 399, 411, 486, 516, 651
DpnII	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	162, 295
Eco57I	CTGAAG	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	230, 298
EcoRV	GATATC	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	69, 622
FaeI	CATG	8 cut(s)	71, 134, 200, 344, 377, 416, 615, 742
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	8 cut(s)	67, 130, 196, 340, 373, 412, 611, 738
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	579, 582, 607, 732
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	4 cut(s)	579, 582, 607, 732
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	579, 582, 607, 732
HgaI	GACGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	8 cut(s)	71, 134, 200, 344, 377, 416, 615, 742
HinfI	GANTC	5 cut(s)	58, 180, 443, 506, 632
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	141, 217, 273
Hpy188III	TCNNGA	9 cut(s)	20, 119, 131, 191, 264, 311, 413, 488, 658
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	33
HpyCH4III	ACNGT	3 cut(s)	162, 391, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 236, 612
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	8 cut(s)	71, 134, 200, 344, 377, 416, 615, 742
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
Lsp1109I	GCAGC	4 cut(s)	565, 593, 618, 743
LweI	GCATC	2 cut(s)	564, 593
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	383, 426
MalI	GATC	6 cut(s)	258, 399, 411, 486, 516, 651
MboI	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
MboII	GAAGA	3 cut(s)	118, 731, 734
MluCI	AATT	5 cut(s)	72, 200, 246, 290, 527
MlyI	GAGTC	3 cut(s)	67, 174, 515
MnlI	CCTC	7 cut(s)	313, 373, 409, 457, 580, 717, 762
Mph1103I	ATGCAT	2 cut(s)	69, 622
MroXI	GAANNNNTTC	2 cut(s)	126, 146
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	2 cut(s)	417, 743
MspA1I	CMGCKG	2 cut(s)	584, 734
MspR9I	CCNGG	2 cut(s)	232, 300
Mva1269I	GAATGC	2 cut(s)	241, 620
MvaI	CCWGG	2 cut(s)	232, 300
MwoI	GCNNNNNNNGC	3 cut(s)	142, 236, 612
NdeII	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	8 cut(s)	71, 134, 200, 344, 377, 416, 615, 742
NlaIV	GGNNCC	2 cut(s)	164, 297
NmuCI	GTSAC	2 cut(s)	383, 426
NsiI	ATGCAT	2 cut(s)	69, 622
NspI	RCATGY	2 cut(s)	377, 615
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	2 cut(s)	130, 412
PctI	GAATGC	2 cut(s)	241, 620
PdmI	GAANNNNTTC	2 cut(s)	126, 146
PfeI	GAWTC	2 cut(s)	443, 632
PkrI	GCNGC	4 cut(s)	580, 583, 608, 733
PleI	GAGTC	3 cut(s)	66, 174, 514
PpsI	GAGTC	3 cut(s)	66, 174, 514
Psp6I	CCWGG	2 cut(s)	230, 298
PspGI	CCWGG	2 cut(s)	230, 298
PspN4I	GGNNCC	2 cut(s)	164, 297
PspPI	GGNCC	2 cut(s)	162, 295
PstI	CTGCAG	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	2 cut(s)	417, 743
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	4 cut(s)	579, 582, 607, 732
Sau3AI	GATC	6 cut(s)	256, 397, 409, 484, 514, 649
Sau96I	GGNCC	2 cut(s)	162, 295
SchI	GAGTC	3 cut(s)	67, 174, 515
ScrFI	CCNGG	2 cut(s)	232, 300
SetI	ASST	6 cut(s)	14, 50, 104, 138, 225, 736
SfaNI	GCATC	2 cut(s)	564, 593
SfcI	CTRYAG	2 cut(s)	84, 579
SinI	GGWCC	2 cut(s)	162, 295
SmiMI	CAYNNNNRTG	2 cut(s)	417, 743
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	5 cut(s)	72, 200, 246, 290, 527
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	230, 298
TaaI	ACNGT	3 cut(s)	162, 391, 426
TaqI	TCGA	3 cut(s)	104, 396, 497
TasI	AATT	5 cut(s)	72, 200, 246, 290, 527
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	443, 632
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	383, 426
TseI	GCWGC	4 cut(s)	578, 581, 606, 731
Tsp45I	GTSAC	2 cut(s)	383, 426
TspDTI	ATGAA	8 cut(s)	84, 119, 195, 213, 347, 366, 435, 450
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	162, 295
XapI	RAATTY	2 cut(s)	72, 200
XceI	RCATGY	2 cut(s)	377, 615
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	2 cut(s)	126, 146
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	2 cut(s)	69, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.