Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013196

Physical Location & Seq

Genomic Coordinates Forward (+)

2374878 .. 2375908

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1011500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGTGTGCACGTGCATGATGTTACTCTTCGGCGACTTATATGTATAATAAGTAGACTTCTGTATGCATGTGCACATTTCCGCAGGGTGTTAACCTCTGCAGGTTATCCAAATATATGTGGAGGTATATCTGCTCTGGAAGTTATTCATGAGCTTCAGAAGCACTTCCCAATCAAACGGTCTCCAATGAGATTGCGACTCATAGTTCCTGACCATGAATTTTCATCTCTTTCGGAGAAGCTGACTGCCTGGAATGCTAGCATAATTTCTAACGATCAATCTGGAAGTCAGATATCTACTATTTGTGAATTGGACCCTGGTTCTTGTTGTGAATGCGAGGGATTGATGATGAAGTTTCATGGTAGATATGAAGTTCTTGCACTCTCTGTGCATGCGGAGGGTGACACTGTTATCGATCAATATGATGATCATGAGGATGAACCGTCACACTCACTCAAAGATTCCTCGAACATCAGTTCATTAAAGAAAAAAGAATCTACTGATCCTGACTTGTCGAAAAAGGAAGCATCTCTACTGGGAGTGGAAATGCTGCAGGGAAAGCAGAACAAATGCAGCACATGCAATGCATTCATGGGCGATTCCAAGCAGTATAGGGATCACTTCAAGAGTGAGTGGCACAAGCATAACTTGAAACGCAAAACCAGACAACTTCCTCCCCTTACTGAAGAAGAGTGTGCAGCTGACATGGAAATGGATGACTACAAAGCTGATTTGAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

248

Amino Acids

28.02

Weight (kDa)

6.0

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBDS_C	PF20268	63 - 126	6.7e-06	SBDS protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43860 AT1G43860
fragaria_vesca	FvH4_2g15010
malus_domestica	MD05G1011400.v1.1 MD05G1011500.v1.1
prunus_persica	Prupe.8G016400_v2.0.a1
pyrus_communis	pycom05g00670
rosa_chinensis	RchiOBHm_Chr6g0277561
rosa_laevigata	RLG00000013292
rosa_multiflora	Rmu_sc0001846.1_g000029 Rmu_sc0003910.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191210
rosa_rugosa	Rorug06G0109600
rosa_samantha	Rh6AG220100 Rh6BG224000 Rh6CG226300 Rh6DG216900
rosa_wichuraiana	Rw6G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	2 cut(s)	82, 395
AclWI	GGATC	2 cut(s)	497, 624
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	140, 705
AcvI	CACGTG	1 cut(s)	13
AgsI	TTSAA	2 cut(s)	625, 652
AjnI	CCWGG	2 cut(s)	248, 316
AluBI	AGCT	4 cut(s)	154, 241, 701, 728
AluI	AGCT	4 cut(s)	154, 241, 701, 728
Alw21I	GWGCWC	2 cut(s)	12, 76
Alw26I	GTCTC	1 cut(s)	186
Alw44I	GTGCAC	2 cut(s)	8, 72
AlwI	GGATC	2 cut(s)	497, 624
ApaLI	GTGCAC	2 cut(s)	8, 72
ApeKI	GCWGC	3 cut(s)	550, 573, 698
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	2 cut(s)	144, 164
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	413
AsuNHI	GCTAGC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	2 cut(s)	12, 76
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbrPI	CACGTG	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	12, 76
BbvI	GCAGC	3 cut(s)	537, 585, 710
BciT130I	CCWGG	2 cut(s)	250, 318
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	2 cut(s)	99, 551
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	551, 574, 699
BlsI	GCNGC	3 cut(s)	552, 575, 700
Bme1390I	CCNGG	2 cut(s)	250, 318
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	2 cut(s)	250, 318
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	536
BmtI	GCTAGC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	250, 318
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	442, 721
BseMI	GCAATG	1 cut(s)	589
BseNI	ACTGG	1 cut(s)	540
BseSI	GKGCMC	2 cut(s)	12, 76
BseXI	GCAGC	3 cut(s)	537, 585, 710
BsgI	GTGCAG	1 cut(s)	717
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	12, 76
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	3 cut(s)	259, 338, 587
Bso31I	GGTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	12, 76
Bsp143I	GATC	5 cut(s)	274, 415, 427, 502, 616
BspACI	CCGC	2 cut(s)	82, 395
BspDI	ATCGAT	1 cut(s)	414
BspHI	TCATGA	2 cut(s)	148, 430
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	2 cut(s)	103, 555
BspMI	ACCTGC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	497, 624
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	5 cut(s)	274, 415, 427, 502, 616
Bst2UI	CCWGG	2 cut(s)	250, 318
Bst4CI	ACNGT	3 cut(s)	180, 409, 444
Bst6I	CTCTTC	2 cut(s)	33, 684
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	259, 393
BstF5I	GGATG	2 cut(s)	442, 721
BstKTI	GATC	5 cut(s)	277, 418, 430, 505, 619
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	5 cut(s)	274, 415, 427, 502, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 254, 559, 579
BstNI	CCWGG	2 cut(s)	250, 318
BstNSI	RCATGY	3 cut(s)	72, 395, 582
BstSCI	CCNGG	2 cut(s)	248, 316
BstSFI	CTRYAG	2 cut(s)	99, 551
BstSLI	GKGCMC	2 cut(s)	12, 76
BstV1I	GCAGC	3 cut(s)	537, 585, 710
Bsu15I	ATCGAT	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	442, 721
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	259, 393
CciI	TCATGA	2 cut(s)	148, 430
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	414
CviJI	RGCY	4 cut(s)	154, 241, 701, 728
CviKI_1	RGCY	4 cut(s)	154, 241, 701, 728
DpnI	GATC	5 cut(s)	276, 417, 429, 504, 618
DpnII	GATC	5 cut(s)	274, 415, 427, 502, 616
Eam1104I	CTCTTC	2 cut(s)	33, 684
EarI	CTCTTC	2 cut(s)	33, 684
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	140, 705
Eco72I	CACGTG	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	248, 316
EcoRV	GATATC	1 cut(s)	294
EcoT22I	ATGCAT	2 cut(s)	70, 589
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	551, 574, 699
FokI	GGATG	2 cut(s)	449, 728
Fsp4HI	GCNGC	3 cut(s)	551, 574, 699
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	551, 574, 699
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	4 cut(s)	198, 461, 494, 599
HpaI	GTTAAC	1 cut(s)	93
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	10, 56, 74, 93
Hpy188I	TCNGA	3 cut(s)	159, 235, 291
Hpy188III	TCNNGA	7 cut(s)	137, 149, 209, 282, 431, 506, 625
Hpy8I	GTNNAC	4 cut(s)	10, 56, 74, 93
HpyCH4III	ACNGT	3 cut(s)	180, 409, 444
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 254, 559, 579
HpySE526I	ACGT	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	274, 415, 427, 502, 616
Lsp1109I	GCAGC	3 cut(s)	537, 585, 710
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	3 cut(s)	22, 401, 444
MalI	GATC	5 cut(s)	276, 417, 429, 504, 618
MboI	GATC	5 cut(s)	274, 415, 427, 502, 616
MboII	GAAGA	3 cut(s)	20, 698, 701
MhlI	GDGCHC	2 cut(s)	12, 76
MluCI	AATT	3 cut(s)	218, 264, 308
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	8 cut(s)	106, 116, 331, 391, 427, 475, 684, 729
Mph1103I	ATGCAT	2 cut(s)	70, 589
MroXI	GAANNNNTTC	2 cut(s)	144, 164
MseI	TTAA	2 cut(s)	92, 482
MslI	CAYNNNNRTG	3 cut(s)	15, 435, 710
MspA1I	CMGCKG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	250, 318
Mva1269I	GAATGC	3 cut(s)	259, 338, 587
MvaI	CCWGG	2 cut(s)	250, 318
MwoI	GCNNNNNNNGC	4 cut(s)	160, 254, 559, 579
NdeII	GATC	5 cut(s)	274, 415, 427, 502, 616
NheI	GCTAGC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	2 cut(s)	401, 444
NsiI	ATGCAT	2 cut(s)	70, 589
NspI	RCATGY	3 cut(s)	72, 395, 582
PaeI	GCATGC	1 cut(s)	395
PagI	TCATGA	2 cut(s)	148, 430
PctI	GAATGC	3 cut(s)	259, 338, 587
PdmI	GAANNNNTTC	2 cut(s)	144, 164
PfeI	GAWTC	3 cut(s)	461, 494, 599
PkrI	GCNGC	3 cut(s)	552, 575, 700
PleI	GAGTC	1 cut(s)	192
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	248, 316
PspCI	CACGTG	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	248, 316
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	2 cut(s)	103, 555
PvuII	CAGCTG	1 cut(s)	701
RseI	CAYNNNNRTG	3 cut(s)	15, 435, 710
SaqAI	TTAA	2 cut(s)	92, 482
SatI	GCNGC	3 cut(s)	551, 574, 699
Sau3AI	GATC	5 cut(s)	274, 415, 427, 502, 616
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	250, 318
SduI	GDGCHC	2 cut(s)	12, 76
SetI	ASST	8 cut(s)	15, 98, 106, 127, 156, 243, 703, 730
SfaNI	GCATC	1 cut(s)	536
SfcI	CTRYAG	2 cut(s)	99, 551
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	3 cut(s)	15, 435, 710
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	218, 264, 308
SsiI	CCGC	2 cut(s)	82, 395
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	248, 316
TaaI	ACNGT	3 cut(s)	180, 409, 444
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	414, 467, 515
TasI	AATT	3 cut(s)	218, 264, 308
TfiI	GAWTC	3 cut(s)	461, 494, 599
Tru1I	TTAA	2 cut(s)	92, 482
Tru9I	TTAA	2 cut(s)	92, 482
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	401, 444
TseI	GCWGC	3 cut(s)	550, 573, 698
Tsp45I	GTSAC	2 cut(s)	401, 444
TspDTI	ATGAA	9 cut(s)	137, 213, 231, 347, 365, 384, 453, 468, 580
TspRI	CASTG	1 cut(s)	412
VneI	GTGCAC	2 cut(s)	8, 72
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	3 cut(s)	72, 395, 582
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	2 cut(s)	144, 164
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	2 cut(s)	70, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.