Rorug06G0109600

Ribosome maturation protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
14866429 .. 14870713
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0109600.1

Sequence Viewer

Length: 1548 bp
ATGGAGGCTCTAAACCCCTCCATAACCCCCAAACCATGTCTACCCAGAACCTCTTTCCTCAAATCCCATCTCCTCAACTCCACCTTCAAACCCACATTCTCTCCCCACAATTCTCAGTTCTTCAAAAGGACACCTCTCTCATTCTCGGTCACCTGTACGCTGAAGACCCCTCAAGAAAACAAGAACAAGAAAAGCAACAATATAAGCAAGAAGATTATACTCTCCGAAGGAGCGCCGCCACCGTTGGAGGAGAAGGGTGGCGGCGCCACCGGAGGCGACAAAGCTCCGGCCAAGTCAGGGAGTGGGGTGATGGGTTCGATGAAGAGGCTTCCGAGGAAGGTTTTGTCGGTTTTGTCTTATCTGCCCTTGGCTATTGGAGAAATGTTTGTCATTGCTGGTCTCATGGCTCTCGGAACTTTCATTGATCAAGGTGAGGCCCCGGATCATTATTTCGATAAATACCCTGAAAGTAATCCTATATTGGGAATTTTCACTTGGAGATGGGTTTTGGCCCTTGGGTTTGACCATATGTACTCATCTCCCATTTTCCTTGCAACATTGGCTCTCCTGGCTGCATCACTAATGGCCTGCACTTACACAACACAGATACCTCTAGTCAAGGTTGCAAGAAGATGGAGTTTTTTGCAGTCTTCTGAGGCCATCCAGAAGCAGGAGTTTTCAGAGTCTTTGCCAAGAGCTTCTGTTCAGGACTTGGGTGTTATTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGACCTTCTTTATATGCCTTTAGGGGGTTGGCTGGACGATTTGCCCCTATTGGAGTACATTTAGCAATGCTGCTGATAATGGTAGGTGGAACTCTTAGTGCAACTGGGAGCTTCAAAGGAGCAGTTACAGTTCCACAGGGTTTGAATTTTGTTGTAGGAGATGTTTTAGGCCCATCTGGGTTTCTGTCTACTCCAACCGATGCTTTCAACACTGAGGTTCATGTAAACAAGTTCTACATGACCTATTTTGACAGTGGAGAGGTATCACAATTTTATACTGATCTTTCACTTATGGACCTAGACGGGAAGGAGGTGCTGAGGAAAACAATCAGTGTAAATAACCCTTTAAGGTATGGAGGGATCACCATATACCAGACAGATTGGAGTATTTCAGCACTGCAAGTGATCAAGGATAATGAAGGGCCTTTTAATTTGGCTGTGGCACCTCTTCAGATCAATGGAGACAAGAAGCTTTACGGAACCTTCTTACCTGTTGGAGATGTTGATGCTCCTAATGTTAAGGGAATATCAATGCTTTTGCGAGATCTACAATCAATTGTCCTGTATGATCAAGAAGGGAAATTTGTTGGAGTTCGACGACCAGGTTCCAAGCTTCCAATTGAAATCGATGGCTCCAAAATTACTATTGTAGATGCAATTGGGAGTAGCGGTCTTGCCCTGAAGACTGACCCGGGAGTGCCGGTTGTATATGCTGGATTCGGTGCTCTAATGCTCACAACTTGCATCAGTTTTCTATCTCATTCACAGTATTCATCTGCTTGCCTAAAGTAG

Protein Analysis

515

Amino Acids

55.63

Weight (kDa)

8.92

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 123 - 383 1.3e-49 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 263, 1198
AccI GTMKAC 2 cut(s) 40, 944
AciI CCGC 3 cut(s) 236, 261, 1425
AclWI GGATC 2 cut(s) 450, 1124
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 3 cut(s) 486, 901, 1337
AcuI CTGAAG 3 cut(s) 182, 1190, 1457
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 3 cut(s) 157, 533, 813
AfiI CCNNNNNNNGG 4 cut(s) 297, 482, 670, 780
AgsI TTSAA 7 cut(s) 88, 124, 754, 871, 901, 964, 1379
AjnI CCWGG 2 cut(s) 567, 1357
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
AluI AGCT 6 cut(s) 284, 698, 734, 867, 1228, 1369
Alw21I GWGCWC 1 cut(s) 1483
Alw26I GTCTC 2 cut(s) 404, 1212
AlwI GGATC 2 cut(s) 450, 1124
Ama87I CYCGRG 1 cut(s) 1447
AoxI GGCC 7 cut(s) 288, 435, 510, 585, 657, 925, 1178
ApeKI GCWGC 2 cut(s) 572, 826
ApoI RAATTY 3 cut(s) 486, 901, 1337
AspLEI GCGC 2 cut(s) 235, 266
AspS9I GGNCC 6 cut(s) 436, 511, 758, 926, 1051, 1178
AsuC2I CCSGG 3 cut(s) 440, 1448, 1449
AsuHPI GGTGA 4 cut(s) 142, 319, 443, 1111
AvaI CYCGRG 1 cut(s) 1447
AvaII GGWCC 2 cut(s) 758, 1051
BanI GGYRCC 2 cut(s) 263, 1198
BbsI GAAGAC 3 cut(s) 170, 642, 1445
Bbv12I GWGCWC 1 cut(s) 1483
BbvCI CCTCAGC 1 cut(s) 1073
BbvI GCAGC 2 cut(s) 559, 813
BccI CCATC 7 cut(s) 75, 304, 495, 627, 668, 937, 1379
BciT130I CCWGG 2 cut(s) 569, 1359
BclI TGATCA 3 cut(s) 424, 1161, 1324
BcnI CCSGG 3 cut(s) 440, 1448, 1449
BcoDI GTCTC 2 cut(s) 404, 1212
BfaI CTAG 2 cut(s) 614, 1055
BfoI RGCGCY 2 cut(s) 236, 267
BglII AGATCT 1 cut(s) 1300
BisI GCNGC 4 cut(s) 236, 262, 573, 827
BlsI GCNGC 4 cut(s) 237, 263, 574, 828
Bme1390I CCNGG 5 cut(s) 440, 569, 1359, 1448, 1449
Bme18I GGWCC 2 cut(s) 758, 1051
BmeT110I CYCGRG 1 cut(s) 1447
BmgT120I GGNCC 6 cut(s) 436, 511, 758, 926, 1051, 1178
BmiI GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1363, 1390
BmrFI CCNGG 5 cut(s) 440, 569, 1359, 1448, 1449
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
BmuI ACTGGG 1 cut(s) 870
BpiI GAAGAC 3 cut(s) 170, 642, 1445
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 3 cut(s) 440, 1448, 1449
Bsa29I ATCGAT 1 cut(s) 1383
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 5 cut(s) 332, 366, 438, 514, 1447
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 6 cut(s) 85, 115, 1411, 1441, 1443, 1473
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 482, 670, 780
Bse118I RCCGGY 1 cut(s) 1456
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 2 cut(s) 390, 828
BseBI CCWGG 2 cut(s) 569, 1359
BseCI ATCGAT 1 cut(s) 1383
BseDI CCNNGG 5 cut(s) 332, 366, 438, 514, 1447
BseGI GGATG 1 cut(s) 660
BseLI CCNNNNNNNGG 4 cut(s) 297, 482, 670, 780
BseMI GCAATG 2 cut(s) 390, 828
BseMII CTCAG 4 cut(s) 128, 645, 960, 1064
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 2 cut(s) 62, 263
BseXI GCAGC 2 cut(s) 559, 813
BsgI GTGCAG 1 cut(s) 574
BshFI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BshNI GGYRCC 2 cut(s) 263, 1198
BshVI ATCGAT 1 cut(s) 1383
BsiHKAI GWGCWC 1 cut(s) 1483
BsiHKCI CYCGRG 1 cut(s) 1447
BsiSI CCGG 5 cut(s) 270, 287, 440, 1448, 1457
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 4 cut(s) 297, 482, 670, 780
BsmAI GTCTC 2 cut(s) 404, 1212
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 1447
Bsp1286I GDGCHC 1 cut(s) 1483
Bsp143I GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
BspACI CCGC 3 cut(s) 236, 261, 1425
BspANI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BspCNI CTCAG 4 cut(s) 127, 646, 961, 1065
BspDI ATCGAT 1 cut(s) 1383
BspLI GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1363, 1390
BspPI GGATC 2 cut(s) 450, 1124
BspT107I GGYRCC 2 cut(s) 263, 1198
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 390, 828
BsrFI RCCGGY 1 cut(s) 1456
BsrI ACTGG 1 cut(s) 865
BssAI RCCGGY 1 cut(s) 1456
BssECI CCNNGG 5 cut(s) 332, 366, 438, 514, 1447
BssMI GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 2 cut(s) 366, 514
Bst2UI CCWGG 2 cut(s) 569, 1359
Bst4CI ACNGT 4 cut(s) 243, 886, 1010, 1524
Bst6I CTCTTC 2 cut(s) 317, 1209
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 589, 1537
BstDEI CTNAG 5 cut(s) 114, 654, 851, 969, 1073
BstEII GGTNACC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 660
BstH2I RGCGCY 2 cut(s) 236, 267
BstHHI GCGC 2 cut(s) 235, 266
BstKTI GATC 8 cut(s) 427, 445, 1039, 1119, 1164, 1212, 1303, 1327
BstMAI GTCTC 2 cut(s) 404, 1212
BstMBI GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 560, 569
BstNI CCWGG 2 cut(s) 569, 1359
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 5 cut(s) 438, 567, 1357, 1446, 1447
BstV1I GCAGC 2 cut(s) 559, 813
BstV2I GAAGAC 3 cut(s) 170, 642, 1445
BstX2I RGATCY 1 cut(s) 1300
BstYI RGATCY 1 cut(s) 1300
Bsu15I ATCGAT 1 cut(s) 1383
BsuRI GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
BsuTUI ATCGAT 1 cut(s) 1383
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 1 cut(s) 1151
BtsIMutI CAGTG 4 cut(s) 966, 1015, 1093, 1151
Cac8I GCNNGC 2 cut(s) 589, 1537
CfoI GCGC 2 cut(s) 235, 266
Cfr10I RCCGGY 1 cut(s) 1456
Cfr13I GGNCC 6 cut(s) 436, 511, 758, 926, 1051, 1178
Cfr9I CCCGGG 1 cut(s) 1447
ClaI ATCGAT 1 cut(s) 1383
CsiI ACCWGGT 1 cut(s) 1357
Csp6I GTAC 3 cut(s) 156, 532, 812
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 4 cut(s) 36, 403, 977, 994
CviQI GTAC 3 cut(s) 156, 532, 812
DdeI CTNAG 5 cut(s) 114, 654, 851, 969, 1073
DinI GGCGCC 1 cut(s) 265
DpnI GATC 8 cut(s) 426, 444, 1038, 1118, 1163, 1211, 1302, 1326
DpnII GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 317, 1209
EarI CTCTTC 2 cut(s) 317, 1209
Eco130I CCWWGG 2 cut(s) 366, 514
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 758, 1051
Eco57I CTGAAG 3 cut(s) 182, 1190, 1457
Eco88I CYCGRG 1 cut(s) 1447
Eco91I GGTNACC 1 cut(s) 148
EcoO109I RGGNCCY 3 cut(s) 436, 758, 1178
EcoO65I GGTNACC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 567, 1357
EcoT14I CCWWGG 2 cut(s) 366, 514
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 366, 514
FaeI CATG 4 cut(s) 39, 406, 980, 997
FaqI GGGAC 1 cut(s) 771
FatI CATG 4 cut(s) 35, 402, 976, 993
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 3 cut(s) 424, 1161, 1324
FblI GTMKAC 2 cut(s) 40, 944
Fnu4HI GCNGC 4 cut(s) 236, 262, 573, 827
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 4 cut(s) 236, 262, 573, 827
FspBI CTAG 2 cut(s) 614, 1055
GlaI GCGC 2 cut(s) 234, 265
GluI GCNGC 4 cut(s) 236, 262, 573, 827
HaeII RGCGCY 2 cut(s) 236, 267
HaeIII GGCC 7 cut(s) 290, 437, 512, 587, 659, 927, 1180
HapII CCGG 5 cut(s) 270, 287, 440, 1448, 1457
HhaI GCGC 2 cut(s) 235, 266
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 39, 406, 980, 997
Hin6I GCGC 2 cut(s) 233, 264
HinP1I GCGC 2 cut(s) 233, 264
HindIII AAGCTT 2 cut(s) 1226, 1367
HinfI GANTC 2 cut(s) 683, 1473
HpaII CCGG 5 cut(s) 270, 287, 440, 1448, 1457
HphI GGTGA 4 cut(s) 142, 319, 443, 1111
Hpy166II GTNNAC 3 cut(s) 41, 945, 982
Hpy188I TCNGA 6 cut(s) 226, 333, 413, 655, 682, 1209
Hpy188III TCNNGA 5 cut(s) 173, 664, 707, 751, 1328
Hpy8I GTNNAC 3 cut(s) 41, 945, 982
Hpy99I CGWCG 1 cut(s) 1356
HpyCH4III ACNGT 4 cut(s) 243, 886, 1010, 1524
HpyCH4V TGCA 9 cut(s) 554, 575, 591, 626, 646, 857, 1156, 1412, 1500
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 569
HpyF3I CTNAG 5 cut(s) 114, 654, 851, 969, 1073
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 39, 406, 980, 997
HspAI GCGC 2 cut(s) 233, 264
KasI GGCGCC 1 cut(s) 263
Ksp22I TGATCA 3 cut(s) 424, 1161, 1324
Kzo9I GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
LmnI GCTCC 7 cut(s) 230, 289, 731, 864, 875, 1270, 1394
Lsp1109I GCAGC 2 cut(s) 559, 813
LweI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
MabI ACCWGGT 1 cut(s) 1357
MaeI CTAG 2 cut(s) 614, 1055
MaeIII GTNAC 2 cut(s) 148, 880
MalI GATC 8 cut(s) 426, 444, 1038, 1118, 1163, 1211, 1302, 1326
MboI GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
MboII GAAGA 8 cut(s) 112, 175, 223, 334, 642, 642, 1196, 1450
MfeI CAATTG 3 cut(s) 1311, 1374, 1413
MflI RGATCY 1 cut(s) 1300
MhlI GDGCHC 1 cut(s) 1483
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 4 cut(s) 225, 974, 1231, 1324
MseI TTAA 3 cut(s) 1103, 1185, 1275
MspI CCGG 5 cut(s) 270, 287, 440, 1448, 1457
MspR9I CCNGG 5 cut(s) 440, 569, 1359, 1448, 1449
MunI CAATTG 3 cut(s) 1311, 1374, 1413
MvaI CCWGG 2 cut(s) 569, 1359
MwoI GCNNNNNNNGC 2 cut(s) 560, 569
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 3 cut(s) 440, 1448, 1449
NdeI CATATG 1 cut(s) 528
NdeII GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
NlaIII CATG 4 cut(s) 39, 406, 980, 997
NlaIV GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1363, 1390
NmuCI GTSAC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 1473
PkrI GCNGC 4 cut(s) 237, 263, 574, 828
PleI GAGTC 1 cut(s) 691
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 2 cut(s) 567, 1357
PspEI GGTNACC 1 cut(s) 148
PspGI CCWGG 2 cut(s) 567, 1357
PspN4I GGNNCC 7 cut(s) 265, 438, 759, 1200, 1237, 1363, 1390
PspPI GGNCC 6 cut(s) 436, 511, 758, 926, 1051, 1178
PspPPI RGGWCCY 1 cut(s) 758
PsuI RGATCY 1 cut(s) 1300
RsaI GTAC 3 cut(s) 157, 533, 813
RsaNI GTAC 3 cut(s) 156, 532, 812
SaqAI TTAA 3 cut(s) 1103, 1185, 1275
SatI GCNGC 4 cut(s) 236, 262, 573, 827
Sau3AI GATC 8 cut(s) 424, 442, 1036, 1116, 1161, 1209, 1300, 1324
Sau96I GGNCC 6 cut(s) 436, 511, 758, 926, 1051, 1178
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 5 cut(s) 440, 569, 1359, 1448, 1449
SduI GDGCHC 1 cut(s) 1483
SexAI ACCWGGT 1 cut(s) 1357
SfaNI GCATC 5 cut(s) 584, 946, 1252, 1399, 1509
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 2 cut(s) 758, 1051
SmaI CCCGGG 1 cut(s) 1449
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SsiI CCGC 3 cut(s) 236, 261, 1425
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 2 cut(s) 614, 1055
StyD4I CCNGG 5 cut(s) 438, 567, 1357, 1446, 1447
StyI CCWWGG 2 cut(s) 366, 514
TaaI ACNGT 4 cut(s) 243, 886, 1010, 1524
TaqI TCGA 4 cut(s) 317, 453, 1351, 1383
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 2 cut(s) 531, 811
TauI GCSGC 2 cut(s) 238, 264
TfiI GAWTC 1 cut(s) 1473
Tru1I TTAA 3 cut(s) 1103, 1185, 1275
Tru9I TTAA 3 cut(s) 1103, 1185, 1275
TscAI CASTG 4 cut(s) 973, 1015, 1093, 1158
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 572, 826
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 5 cut(s) 335, 409, 965, 1188, 1518
TspGWI ACGGA 1 cut(s) 1248
TspMI CCCGGG 1 cut(s) 1447
TspRI CASTG 4 cut(s) 973, 1015, 1093, 1158
VpaK11BI GGWCC 2 cut(s) 758, 1051
XapI RAATTY 3 cut(s) 486, 901, 1337
XmaI CCCGGG 1 cut(s) 1447
XmiI GTMKAC 2 cut(s) 40, 944
XspI CTAG 2 cut(s) 614, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.