Rh6AG220000

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006429
Physical Location & Seq
Forward (+)
39612472 .. 39613895
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG220000.1

Sequence Viewer

Length: 1125 bp
ATGGAGATTGATGTGAAACAAGCCCAAGTTCAAGGATTTTCTAACAATTCCAAGAGGATTTTTGTGGGAGGTCTACCACATGATCTAAGAGATGAAGAATTCAAGAACTACTTTGAGAAGTTTGGTAAAATTACAGATTGGGATGTAATGTTTGATAAGGAAAACCACAAACCTAGGGGGTTTGGATTCATCACTTATGAGTCAGAGGAGGCTGTGCATGATGTGTTGCAGAAGAGGTTTCATGACTTGAATCAAAAGTCTGTAGAGGTAAAGAGAGCTCACCCTCAGAATAGGAATAACAACAGGCTCATGAAACAGTATGATCGCTACAATGTAGCTCCTAATGGGTATAGATACGGTGTAGGGTATACGTCTGGTAATAATCCTGGAACTTTGGGGCATTATAATCCATATTGCAGTAGTTATGTAGCACCTTATGGATATAGATATGGTGCTGGGTTTTTGCACGATCCGAATCCTTATAATGCTTGGAATGCTAACAACTCCAATATCCGAAGCTGGACGGAGCTTCCTGATGATGTTACCGCAATGATACTGTCACGTCTAGGTGCAATTGAGATCTTGAAAACTGCTCAGAAGGCTCGTAGCTGTGGTAAACTGGTCGATATCAGCATCCAGAACTTTGGCAATGATGCACTTCTTGAGTATATCACTGATAGTTCACCTGGAATCAGACGTCTTCGTTTGGATAGTTGCCCAGTAACTGACAAGGGATTAAGTAAAGTAGCTTCCAAACTTCCGCTGCTGGAGGACCTTGAAATTTCACACACAAACTCTTGCTCACGCGAGTCTCTTGAAGCAATAGGGCGCTCTTGCCCTCTCTTAACATCAATGAAGTATAAGGACGGATGGCAGGTATGGTTCAAATTTGATGATACTAATGAACAAGCACTTGCCATAGCCGGAACAATGCATGGTTTACGCTACCTCCAGCTTTTAGGGAATGCGGTGACTAATGATGGATTGGCCAAGATCCTTGATTCTTGTCCTCATCCCGAGTCACTTGATCTGAGATATTGTTTCAATCTTAATTGGGGAGGAGATTTGCAGAGAAGATGTTCTACACAAGTTAAAACACATCAACTTCCCGGAGGATCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

374

Amino Acids

42.36

Weight (kDa)

7.61

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 17 - 92 2e-10 RNA recognition motif
RRM_1 PF00076 20 - 78 2.8e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 405, 483
AatII GACGTC 1 cut(s) 700
Acc36I ACCTGC 1 cut(s) 865
AccI GTMKAC 2 cut(s) 73, 368
AccII CGCG 1 cut(s) 807
AciI CCGC 3 cut(s) 546, 761, 968
AclWI GGATC 3 cut(s) 464, 988, 1123
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 3 cut(s) 98, 780, 887
AcyI GRCGYC 1 cut(s) 697
AgsI TTSAA 8 cut(s) 32, 103, 250, 586, 779, 818, 886, 1045
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 2 cut(s) 385, 685
AluBI AGCT 7 cut(s) 278, 338, 519, 529, 609, 749, 955
AluI AGCT 7 cut(s) 278, 338, 519, 529, 609, 749, 955
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 816
AlwI GGATC 3 cut(s) 464, 988, 1123
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 1016
AoxI GGCC 1 cut(s) 987
ApeKI GCWGC 1 cut(s) 763
ApoI RAATTY 3 cut(s) 98, 780, 887
Asp700I GAANNNNTTC 1 cut(s) 1078
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 772
AsuC2I CCSGG 1 cut(s) 1110
AsuHPI GGTGA 3 cut(s) 272, 675, 982
AvaI CYCGRG 1 cut(s) 1016
AvaII GGWCC 1 cut(s) 772
AvrII CCTAGG 1 cut(s) 173
BalI TGGCCA 1 cut(s) 989
BanII GRGCYC 1 cut(s) 280
BarI GAAGNNNNNNTAC 4 cut(s) 733, 765, 1066, 1098
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 750
BccI CCATC 2 cut(s) 864, 974
BciT130I CCWGG 2 cut(s) 387, 687
BcnI CCSGG 1 cut(s) 1110
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 2 cut(s) 174, 566
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 832
BfuAI ACCTGC 1 cut(s) 865
BglII AGATCT 1 cut(s) 579
BisI GCNGC 1 cut(s) 764
BlnI CCTAGG 1 cut(s) 173
BlsI GCNGC 1 cut(s) 765
Bme1390I CCNGG 3 cut(s) 387, 687, 1110
Bme18I GGWCC 1 cut(s) 772
BmeT110I CYCGRG 1 cut(s) 1016
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 1 cut(s) 772
BmrFI CCNGG 3 cut(s) 387, 687, 1110
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 2 cut(s) 642, 643
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 2 cut(s) 788, 935
BpuEI CTTGAG 1 cut(s) 683
BpuMI CCSGG 1 cut(s) 1110
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bse1I ACTGG 2 cut(s) 624, 719
Bse3DI GCAATG 2 cut(s) 555, 655
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 387, 687
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 4 cut(s) 148, 633, 875, 1012
BseJI GATNNNNATC 1 cut(s) 474
BseMI GCAATG 2 cut(s) 555, 655
BseMII CTCAG 3 cut(s) 299, 608, 1022
BseNI ACTGG 2 cut(s) 624, 719
BseRI GAGGAG 2 cut(s) 221, 1074
BseXI GCAGC 1 cut(s) 750
BseYI CCCAGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 1016
BsiSI CCGG 2 cut(s) 924, 1110
BsmAI GTCTC 1 cut(s) 816
BsmI GAATGC 2 cut(s) 499, 970
BsnI GGCC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 1016
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
BspACI CCGC 3 cut(s) 546, 761, 968
BspANI GGCC 1 cut(s) 989
BspCNI CTCAG 3 cut(s) 298, 607, 1023
BspFNI CGCG 1 cut(s) 807
BspHI TCATGA 2 cut(s) 241, 309
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 3 cut(s) 464, 988, 1123
BsrDI GCAATG 2 cut(s) 555, 655
BsrI ACTGG 2 cut(s) 624, 719
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
BssNAI GTATAC 1 cut(s) 369
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 387, 687
Bst4CI ACNGT 3 cut(s) 318, 359, 558
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 697
BstDEI CTNAG 4 cut(s) 86, 285, 594, 1031
BstF5I GGATG 4 cut(s) 148, 633, 875, 1012
BstFNI CGCG 1 cut(s) 807
BstH2I RGCGCY 1 cut(s) 832
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 7 cut(s) 85, 325, 472, 582, 996, 1030, 1118
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
BstMWI GCNNNNNNNGC 2 cut(s) 494, 599
BstNI CCWGG 2 cut(s) 387, 687
BstSCI CCNGG 3 cut(s) 385, 685, 1108
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 1 cut(s) 750
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 2 cut(s) 579, 993
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 2 cut(s) 579, 993
BstZ17I GTATAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 989
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 4 cut(s) 148, 633, 875, 1012
BtsIMutI CAGTG 1 cut(s) 672
BveI ACCTGC 1 cut(s) 865
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 2 cut(s) 241, 309
CfoI GCGC 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 772
CviAII CATG 5 cut(s) 80, 218, 242, 310, 935
DdeI CTNAG 4 cut(s) 86, 285, 594, 1031
DpnI GATC 7 cut(s) 84, 324, 471, 581, 995, 1029, 1117
DpnII GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 1016
EcoICRI GAGCTC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 385, 685
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 5 cut(s) 83, 221, 245, 313, 938
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 5 cut(s) 79, 217, 241, 309, 934
FblI GTMKAC 2 cut(s) 73, 368
Fnu4HI GCNGC 1 cut(s) 764
FokI GGATG 4 cut(s) 155, 620, 882, 999
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 764
FspBI CTAG 2 cut(s) 174, 566
GlaI GCGC 1 cut(s) 830
GluI GCNGC 1 cut(s) 764
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 2 cut(s) 788, 935
HaeII RGCGCY 1 cut(s) 832
HaeIII GGCC 1 cut(s) 989
HapII CCGG 2 cut(s) 924, 1110
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 5 cut(s) 83, 221, 245, 313, 938
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HinfI GANTC 8 cut(s) 186, 200, 250, 475, 690, 809, 1001, 1019
HpaII CCGG 2 cut(s) 924, 1110
HphI GGTGA 3 cut(s) 272, 675, 982
Hpy166II GTNNAC 5 cut(s) 74, 369, 617, 683, 941
Hpy188I TCNGA 7 cut(s) 205, 288, 474, 515, 597, 695, 1032
Hpy188III TCNNGA 9 cut(s) 103, 242, 310, 533, 583, 637, 662, 815, 1016
Hpy8I GTNNAC 5 cut(s) 74, 369, 617, 683, 941
HpyAV CCTTC 1 cut(s) 592
HpyCH4III ACNGT 3 cut(s) 318, 359, 558
HpyCH4IV ACGT 3 cut(s) 371, 562, 697
HpyCH4V TGCA 8 cut(s) 217, 229, 417, 466, 572, 656, 934, 1069
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 599
HpyF3I CTNAG 4 cut(s) 86, 285, 594, 1031
HpySE526I ACGT 3 cut(s) 371, 562, 697
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 5 cut(s) 83, 221, 245, 313, 938
HspAI GCGC 1 cut(s) 829
Kzo9I GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
LmnI GCTCC 2 cut(s) 343, 526
Lsp1109I GCAGC 1 cut(s) 750
LweI GCATC 2 cut(s) 642, 643
MaeI CTAG 2 cut(s) 174, 566
MaeII ACGT 3 cut(s) 371, 562, 697
MaeIII GTNAC 5 cut(s) 541, 558, 721, 970, 1020
MalI GATC 7 cut(s) 84, 324, 471, 581, 995, 1029, 1117
MboI GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
MboII GAAGA 4 cut(s) 107, 244, 692, 1086
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 579, 993
MhlI GDGCHC 1 cut(s) 280
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 7 cut(s) 46, 98, 129, 573, 780, 887, 1051
MluNI TGGCCA 1 cut(s) 989
MlyI GAGTC 3 cut(s) 209, 818, 1028
Mox20I TGGCCA 1 cut(s) 989
Mph1103I ATGCAT 1 cut(s) 936
MroXI GAANNNNTTC 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 989
MseI TTAA 4 cut(s) 737, 845, 1050, 1092
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 2 cut(s) 924, 1110
MspR9I CCNGG 3 cut(s) 387, 687, 1110
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 499, 970
MvaI CCWGG 2 cut(s) 387, 687
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 2 cut(s) 494, 599
NciI CCSGG 1 cut(s) 1110
NdeII GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
NlaIII CATG 5 cut(s) 83, 221, 245, 313, 938
NmuCI GTSAC 3 cut(s) 558, 970, 1020
NsiI ATGCAT 1 cut(s) 936
PagI TCATGA 2 cut(s) 241, 309
PctI GAATGC 2 cut(s) 499, 970
PdmI GAANNNNTTC 1 cut(s) 1078
PfeI GAWTC 5 cut(s) 186, 250, 475, 690, 1001
PfoI TCCNGGA 2 cut(s) 385, 1108
PkrI GCNGC 1 cut(s) 765
PleI GAGTC 3 cut(s) 208, 817, 1027
PpsI GAGTC 3 cut(s) 208, 817, 1027
PpuMI RGGWCCY 1 cut(s) 772
PsiI TTATAA 2 cut(s) 405, 483
Psp124BI GAGCTC 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 2 cut(s) 385, 685
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 385, 685
PspPI GGNCC 1 cut(s) 772
PspPPI RGGWCCY 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 2 cut(s) 579, 993
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 4 cut(s) 737, 845, 1050, 1092
SatI GCNGC 1 cut(s) 764
Sau3AI GATC 7 cut(s) 82, 322, 469, 579, 993, 1027, 1115
Sau96I GGNCC 1 cut(s) 772
SchI GAGTC 3 cut(s) 209, 818, 1028
ScrFI CCNGG 3 cut(s) 387, 687, 1110
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 2 cut(s) 642, 643
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 772
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 7 cut(s) 46, 98, 129, 573, 780, 887, 1051
SsiI CCGC 3 cut(s) 546, 761, 968
SspMI CTAG 2 cut(s) 174, 566
SstI GAGCTC 1 cut(s) 280
StyD4I CCNGG 3 cut(s) 385, 685, 1108
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 318, 359, 558
TaiI ACGT 3 cut(s) 374, 565, 700
TaqI TCGA 1 cut(s) 624
TasI AATT 7 cut(s) 46, 98, 129, 573, 780, 887, 1051
TfiI GAWTC 5 cut(s) 186, 250, 475, 690, 1001
Tru1I TTAA 4 cut(s) 737, 845, 1050, 1092
Tru9I TTAA 4 cut(s) 737, 845, 1050, 1092
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 3 cut(s) 558, 970, 1020
TseI GCWGC 1 cut(s) 763
Tsp45I GTSAC 3 cut(s) 558, 970, 1020
TspDTI ATGAA 6 cut(s) 108, 178, 230, 326, 869, 918
TspGWI ACGGA 2 cut(s) 539, 882
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 3 cut(s) 98, 780, 887
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 73, 368
XmnI GAANNNNTTC 1 cut(s) 1078
XspI CTAG 2 cut(s) 174, 566
ZraI GACGTC 1 cut(s) 698
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.