Rmu_co8498617.1_g000001

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8498617.1
Physical Location & Seq
Forward (+)
537 .. 2211
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8498617.1_g000001.1.cds

Sequence Viewer

Length: 1581 bp
atgcagatcgatgtgaaaccatacatcccaatgggtgagaaaaacaaaaaccaggaggaccaaaatgctgaaggttataattccaaaaggatttttgtgggaggtttaccacatgatctaagagatgaagaattcaagaactactttgagaattttggtaaaattacagactgggttgtaatgtatgatagggaaaacaacatgcctaggggatttggattcgtcacttttgattcagaggaggctgtggatgatgtgttgcgcaagaggtttcatgaattgaattataagtctgtggaggcaaagagggctcaccctaagaataggaataacatgctgatgaaaccttatgattgctataatcttgggactttcgggcattgtaatccgtattgctttagttatggagcttcttatgggtatggataccgtttagggtatacgtctgataataatattcaaaattttgggcagtataatccttattgcattagttatggagctcattatgggtatggatacactggagggtttgtgtatgttccaaatccttatagtgaccttcggactcctatttcttgggcacattcaattgattatggtgtatggggtagggaagttgctaacagccccaagtcaactagccgaaactggacggagctcccagatgaagttaccgcgttgatattgtcacgtctaggagcaatcgagatcttagggactgttcagaaggtttgcatgagttggcgcaaaatatgcaaggacagtcttatgtggcacacaattgacatgcgcaatgatggttattctggagtttttttctccctaaagatggagaagatatgccgccaggccattgatcgtagctctggcaatctggttgatatcaatgtgcagaactttggtagcgatgaacttctcaagtatatcactaatagttcacctggaatcaaacgtctccgtttggaaaattgctatgtgacaaacaagggattaattgaagccgcttccaaacttcagctgctagaggaccttgaaatttcaagatcaccaaacccatactcgcgtcaaagtggtcaaactctagaagtgattgggcgctcttgccctcttttaacaacattcaagtataatggcagctggcagagattttacaaacgtagggctactaatgaagatgcacttgccatagcggaaacaatgcatggtttacgccaattacagctttttgggaatgcagtgactaatgatggcttggcgaagattcttgattgttgccctcatcttgagtcacttgatctgcgggattgtttcaatcttaatctgggaggagatttggaaataagatgttctaaacaaattaaaagactgcagcttccagatgattgtcctgatgatgattctgaatcaactgagtcttttggagcatatgatcgtgaagcgagcgactttgacttttgttcaggtcacgacattacttccgattctgataccgaatatgatgactatgacgtcgatgatgactacgaattctcaattggaaaagctaaaggtcaatttttcgacttctatttgaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

60.3

Weight (kDa)

5.16

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 78, 288
AasI GACNNNNNNGTC 1 cut(s) 1511
AatII GACGTC 1 cut(s) 1515
Acc16I TGCGCA 2 cut(s) 263, 794
AccI GTMKAC 1 cut(s) 440
AccII CGCG 2 cut(s) 680, 1066
AciI CCGC 5 cut(s) 678, 847, 1005, 1193, 1303
AcsI RAATTY 5 cut(s) 131, 151, 463, 1038, 1529
AcuI CTGAAG 2 cut(s) 90, 1001
AcyI GRCGYC 1 cut(s) 1512
AfiI CCNNNNNNNGG 1 cut(s) 832
AjiI CACGTC 1 cut(s) 695
AjnI CCWGG 3 cut(s) 51, 849, 943
AjuI GAANNNNNNNTTGG 2 cut(s) 1521, 1553
AluBI AGCT 9 cut(s) 410, 503, 661, 867, 1021, 1140, 1225, 1375, 1547
AluI AGCT 9 cut(s) 410, 503, 661, 867, 1021, 1140, 1225, 1375, 1547
Alw21I GWGCWC 2 cut(s) 505, 663
Alw26I GTCTC 1 cut(s) 962
AoxI GGCC 1 cut(s) 852
ApeKI GCWGC 3 cut(s) 1021, 1137, 1372
ApoI RAATTY 5 cut(s) 131, 151, 463, 1038, 1529
AseI ATTAAT 1 cut(s) 995
AspA2I CCTAGG 1 cut(s) 206
AspLEI GCGC 4 cut(s) 264, 750, 795, 1101
AspS9I GGNCC 2 cut(s) 58, 1030
AsuHPI GGTGA 4 cut(s) 47, 305, 933, 1041
AvaII GGWCC 2 cut(s) 58, 1030
AvrII CCTAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 586
BanII GRGCYC 3 cut(s) 313, 505, 663
Bbv12I GWGCWC 2 cut(s) 505, 663
BbvI GCAGC 3 cut(s) 1008, 1149, 1384
BccI CCATC 3 cut(s) 794, 826, 1244
BciT130I CCWGG 3 cut(s) 53, 851, 945
BciVI GTATCC 2 cut(s) 419, 512
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 5 cut(s) 207, 642, 698, 1025, 1085
BfmI CTRYAG 1 cut(s) 1370
BfoI RGCGCY 1 cut(s) 1102
BfuI GTATCC 2 cut(s) 419, 512
BglII AGATCT 1 cut(s) 711
BisI GCNGC 5 cut(s) 847, 1005, 1022, 1138, 1373
BlnI CCTAGG 1 cut(s) 206
BlsI GCNGC 5 cut(s) 848, 1006, 1023, 1139, 1374
Bme1390I CCNGG 3 cut(s) 53, 851, 945
Bme18I GGWCC 2 cut(s) 58, 1030
BmgBI CACGTC 1 cut(s) 695
BmgT120I GGNCC 2 cut(s) 58, 1030
BmrFI CCNGG 3 cut(s) 53, 851, 945
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 1168
BmuI ACTGGG 1 cut(s) 181
BpmI CTGGAG 2 cut(s) 546, 831
BpuEI CTTGAG 2 cut(s) 905, 1307
Bsa29I ATCGAT 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 1512
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 3 cut(s) 176, 529, 656
Bse3DI GCAATG 1 cut(s) 802
BseBI CCWGG 3 cut(s) 53, 851, 945
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 24, 256
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 1 cut(s) 802
BseMII CTCAG 1 cut(s) 1404
BseNI ACTGG 3 cut(s) 176, 529, 656
BseRI GAGGAG 2 cut(s) 254, 1344
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 3 cut(s) 1008, 1149, 1384
BsgI GTGCAG 1 cut(s) 914
Bsh1236I CGCG 2 cut(s) 680, 1066
BshFI GGCC 1 cut(s) 854
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 505, 663
BslFI GGGAC 2 cut(s) 382, 733
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 1 cut(s) 962
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 2 cut(s) 382, 733
BsmI GAATGC 1 cut(s) 1240
BsnI GGCC 1 cut(s) 854
Bsp1286I GDGCHC 4 cut(s) 313, 505, 586, 663
Bsp143I GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
BspACI CCGC 5 cut(s) 678, 847, 1005, 1193, 1303
BspANI GGCC 1 cut(s) 854
BspCNI CTCAG 1 cut(s) 1405
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 2 cut(s) 680, 1066
BspHI TCATGA 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 1374
BsrDI GCAATG 1 cut(s) 802
BsrI ACTGG 3 cut(s) 176, 529, 656
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 1512
BssT1I CCWWGG 1 cut(s) 206
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 3 cut(s) 53, 851, 945
Bst4CI ACNGT 3 cut(s) 431, 724, 767
BstACI GRCGYC 1 cut(s) 1512
BstAPI GCANNNNNTGC 1 cut(s) 756
BstC8I GCNNGC 2 cut(s) 1142, 1444
BstDEI CTNAG 4 cut(s) 119, 318, 715, 1413
BstF5I GGATG 2 cut(s) 24, 256
BstFNI CGCG 2 cut(s) 680, 1066
BstH2I RGCGCY 1 cut(s) 1102
BstHHI GCGC 4 cut(s) 264, 750, 795, 1101
BstKTI GATC 7 cut(s) 9, 118, 714, 862, 1049, 1300, 1435
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
BstMWI GCNNNNNNNGC 2 cut(s) 308, 756
BstNI CCWGG 3 cut(s) 53, 851, 945
BstNSI RCATGY 3 cut(s) 205, 337, 793
BstSCI CCNGG 3 cut(s) 51, 849, 943
BstSFI CTRYAG 1 cut(s) 1370
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 2 cut(s) 680, 1066
BstV1I GCAGC 3 cut(s) 1008, 1149, 1384
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 9
BsuI GTATCC 2 cut(s) 419, 512
BsuRI GGCC 1 cut(s) 854
BsuTUI ATCGAT 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 695
BtsCI GGATG 2 cut(s) 24, 256
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 2 cut(s) 522, 1245
Cac8I GCNNGC 2 cut(s) 1142, 1444
CciI TCATGA 1 cut(s) 274
CfoI GCGC 4 cut(s) 264, 750, 795, 1101
Cfr13I GGNCC 2 cut(s) 58, 1030
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 1055
CviAII CATG 7 cut(s) 113, 202, 275, 334, 739, 790, 1205
DdeI CTNAG 4 cut(s) 119, 318, 715, 1413
DpnI GATC 7 cut(s) 8, 117, 713, 861, 1048, 1299, 1434
DpnII GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
DrdI GACNNNNNNGTC 1 cut(s) 1511
DseDI GACNNNNNNGTC 1 cut(s) 1511
Ecl136II GAGCTC 2 cut(s) 503, 661
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 3 cut(s) 313, 505, 663
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 2 cut(s) 58, 1030
Eco53kI GAGCTC 2 cut(s) 503, 661
Eco57I CTGAAG 2 cut(s) 90, 1001
EcoICRI GAGCTC 2 cut(s) 503, 661
EcoO109I RGGNCCY 1 cut(s) 1030
EcoRI GAATTC 2 cut(s) 131, 1529
EcoRII CCWGG 3 cut(s) 51, 849, 943
EcoRV GATATC 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 206
EcoT22I ATGCAT 1 cut(s) 1206
EcoT38I GRGCYC 3 cut(s) 313, 505, 663
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 7 cut(s) 116, 205, 278, 337, 742, 793, 1208
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 1167, 1199
FaqI GGGAC 2 cut(s) 382, 733
FatI CATG 7 cut(s) 112, 201, 274, 333, 738, 789, 1204
FauI CCCGC 1 cut(s) 1296
FauNDI CATATG 1 cut(s) 1429
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 5 cut(s) 847, 1005, 1022, 1138, 1373
FokI GGATG 2 cut(s) 11, 263
FriOI GRGCYC 3 cut(s) 313, 505, 663
Fsp4HI GCNGC 5 cut(s) 847, 1005, 1022, 1138, 1373
FspBI CTAG 5 cut(s) 207, 642, 698, 1025, 1085
FspI TGCGCA 2 cut(s) 263, 794
GlaI GCGC 4 cut(s) 263, 749, 794, 1100
GluI GCNGC 5 cut(s) 847, 1005, 1022, 1138, 1373
GsuI CTGGAG 2 cut(s) 546, 831
HaeII RGCGCY 1 cut(s) 1102
HaeIII GGCC 1 cut(s) 854
HgaI GACGC 1 cut(s) 1055
HhaI GCGC 4 cut(s) 264, 750, 795, 1101
Hin1I GRCGYC 1 cut(s) 1512
Hin1II CATG 7 cut(s) 116, 205, 278, 337, 742, 793, 1208
Hin6I GCGC 4 cut(s) 262, 748, 793, 1099
HinP1I GCGC 4 cut(s) 262, 748, 793, 1099
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HphI GGTGA 4 cut(s) 47, 305, 933, 1041
Hpy166II GTNNAC 5 cut(s) 107, 441, 639, 941, 1211
Hpy188I TCNGA 7 cut(s) 238, 448, 567, 729, 1405, 1483, 1489
Hpy8I GTNNAC 5 cut(s) 107, 441, 639, 941, 1211
Hpy99I CGWCG 1 cut(s) 1517
HpyAV CCTTC 3 cut(s) 65, 572, 724
HpyCH4III ACNGT 3 cut(s) 431, 724, 767
HpyCH4IV ACGT 5 cut(s) 443, 694, 955, 1159, 1512
HpyCH4V TGCA 9 cut(s) 4, 489, 738, 759, 895, 1181, 1204, 1238, 1372
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 756
HpyF3I CTNAG 4 cut(s) 119, 318, 715, 1413
HpySE526I ACGT 5 cut(s) 443, 694, 955, 1159, 1512
Hsp92I GRCGYC 1 cut(s) 1512
Hsp92II CATG 7 cut(s) 116, 205, 278, 337, 742, 793, 1208
HspAI GCGC 4 cut(s) 262, 748, 793, 1099
Kzo9I GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
LmnI GCTCC 6 cut(s) 407, 500, 658, 666, 701, 1424
Lsp1109I GCAGC 3 cut(s) 1008, 1149, 1384
LweI GCATC 1 cut(s) 1168
MaeI CTAG 5 cut(s) 207, 642, 698, 1025, 1085
MaeII ACGT 5 cut(s) 443, 694, 955, 1159, 1512
MaeIII GTNAC 8 cut(s) 223, 557, 673, 690, 979, 1240, 1290, 1466
MalI GATC 7 cut(s) 8, 117, 713, 861, 1048, 1299, 1434
MboI GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
MboII GAAGA 4 cut(s) 140, 850, 1187, 1273
MfeI CAATTG 3 cut(s) 591, 783, 1536
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 4 cut(s) 313, 505, 586, 663
MlyI GAGTC 3 cut(s) 562, 1298, 1424
Mph1103I ATGCAT 1 cut(s) 1206
MseI TTAA 4 cut(s) 995, 1115, 1320, 1362
MslI CAYNNNNRTG 2 cut(s) 29, 338
MspA1I CMGCKG 2 cut(s) 1021, 1140
MspR9I CCNGG 3 cut(s) 53, 851, 945
MunI CAATTG 3 cut(s) 591, 783, 1536
Mva1269I GAATGC 1 cut(s) 1240
MvaI CCWGG 3 cut(s) 53, 851, 945
MvnI CGCG 2 cut(s) 680, 1066
MwoI GCNNNNNNNGC 2 cut(s) 308, 756
NdeI CATATG 1 cut(s) 1429
NdeII GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
NlaIII CATG 7 cut(s) 116, 205, 278, 337, 742, 793, 1208
NmuCI GTSAC 7 cut(s) 223, 557, 690, 979, 1240, 1290, 1466
NsbI TGCGCA 2 cut(s) 263, 794
NsiI ATGCAT 1 cut(s) 1206
NspI RCATGY 3 cut(s) 205, 337, 793
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 1240
PfeI GAWTC 7 cut(s) 219, 233, 948, 1264, 1400, 1406, 1484
PkrI GCNGC 5 cut(s) 848, 1006, 1023, 1139, 1374
PleI GAGTC 3 cut(s) 562, 1297, 1423
PpsI GAGTC 3 cut(s) 562, 1297, 1423
PpuMI RGGWCCY 1 cut(s) 1030
PshBI ATTAAT 1 cut(s) 995
PsiI TTATAA 2 cut(s) 78, 288
Psp124BI GAGCTC 2 cut(s) 505, 663
Psp5II RGGWCCY 1 cut(s) 1030
Psp6I CCWGG 3 cut(s) 51, 849, 943
PspGI CCWGG 3 cut(s) 51, 849, 943
PspPI GGNCC 2 cut(s) 58, 1030
PspPPI RGGWCCY 1 cut(s) 1030
PstI CTGCAG 1 cut(s) 1374
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 2 cut(s) 1021, 1140
RseI CAYNNNNRTG 2 cut(s) 29, 338
SacI GAGCTC 2 cut(s) 505, 663
SaqAI TTAA 4 cut(s) 995, 1115, 1320, 1362
SatI GCNGC 5 cut(s) 847, 1005, 1022, 1138, 1373
Sau3AI GATC 7 cut(s) 6, 115, 711, 859, 1046, 1297, 1432
Sau96I GGNCC 2 cut(s) 58, 1030
SchI GAGTC 3 cut(s) 562, 1298, 1424
ScrFI CCNGG 3 cut(s) 53, 851, 945
SduI GDGCHC 4 cut(s) 313, 505, 586, 663
SfaNI GCATC 1 cut(s) 1168
SfcI CTRYAG 1 cut(s) 1370
SinI GGWCC 2 cut(s) 58, 1030
SmiMI CAYNNNNRTG 2 cut(s) 29, 338
SmlI CTYRAG 2 cut(s) 920, 1286
SmoI CTYRAG 2 cut(s) 920, 1286
SsiI CCGC 5 cut(s) 678, 847, 1005, 1193, 1303
SspI AATATT 1 cut(s) 457
SspMI CTAG 5 cut(s) 207, 642, 698, 1025, 1085
SstI GAGCTC 2 cut(s) 505, 663
StyD4I CCNGG 3 cut(s) 51, 849, 943
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 431, 724, 767
TaiI ACGT 5 cut(s) 446, 697, 958, 1162, 1515
TaqI TCGA 4 cut(s) 9, 708, 1515, 1563
TauI GCSGC 2 cut(s) 849, 1007
TfiI GAWTC 7 cut(s) 219, 233, 948, 1264, 1400, 1406, 1484
Tru1I TTAA 4 cut(s) 995, 1115, 1320, 1362
Tru9I TTAA 4 cut(s) 995, 1115, 1320, 1362
TscAI CASTG 2 cut(s) 529, 1245
TseFI GTSAC 7 cut(s) 223, 557, 690, 979, 1240, 1290, 1466
TseI GCWGC 3 cut(s) 1021, 1137, 1372
Tsp45I GTSAC 7 cut(s) 223, 557, 690, 979, 1240, 1290, 1466
TspDTI ATGAA 7 cut(s) 141, 263, 291, 356, 684, 927, 1188
TspGWI ACGGA 3 cut(s) 378, 671, 950
TspRI CASTG 2 cut(s) 529, 1245
VpaK11BI GGWCC 2 cut(s) 58, 1030
VspI ATTAAT 1 cut(s) 995
XapI RAATTY 5 cut(s) 131, 151, 463, 1038, 1529
XbaI TCTAGA 1 cut(s) 1084
XceI RCATGY 3 cut(s) 205, 337, 793
XmaJI CCTAGG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 5 cut(s) 207, 642, 698, 1025, 1085
ZraI GACGTC 1 cut(s) 1513
Zsp2I ATGCAT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.