Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006429

Physical Location & Seq

Genomic Coordinates Reverse (-)

31746652 .. 31747393

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATACTGTCACGTCTCGGAGCAATTGAGATCTTGAAAACTGCTCAGAAGGTTTGCCTGACATGGCGCAAAATAAGCATGGACCCTCTCATGTGGTGCAGAATCGACTTGCACTACGATGGTTCTTCCTATGTGCACCAACAGTTGGACAAAATGTGCCGCCAAGCCATCGATCGTAGCTGTGGTAATCTCGTCGATATCGGCATCCAGAACATTGGCAATGATGCACTTCTTGAGTATATCACTGATAGTTCACGTAGAATCAGACGTCTACGTTTGGATAGTTGCTTAGCAACTAACAAGGGATTAAGTAGAGTATGGTTCAAATTTGAGGATACTGATGAACAAGCACTTGCCATTGCCGGAACAATGCATGGTTTACGTCACCTCCAGCTTTTCGGGAATGCAGTGACTGACGATGGATTGGCCAAGATCCTTGATTCTTGTCCTCATCTCGAGTCACTTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

157

Amino Acids

17.77

Weight (kDa)

6.5

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015111 RchiOBHm_Chr6g0277551
rosa_laevigata	RLG00000013293 RLG00000032172
rosa_multiflora	Rmu_co8060368.1_g000001 Rmu_co8498617.1_g000001 Rmu_sc0001846.1_g000030 Rmu_sc0002209.1_g000005 Rmu_sc0002209.1_g000006 Rmu_sc0003910.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061410 Rroxscaffold_1G00061420 Rroxscaffold_7G00191220
rosa_rugosa	Rorug05G0024500 Rorug05G0024500 Rorug06G0109600 Rorug06G0109600
rosa_samantha	Rh5AG118800 Rh5BG116700 Rh5BG116800 Rh5CG127800 Rh5DG115700 Rh6AG220000 Rh6BG223900 Rh6CG226200 Rh6DG216800
rosa_wichuraiana	Rw6G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	271
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	427, 461
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	37, 325
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	2 cut(s)	180, 394
AluI	AGCT	2 cut(s)	180, 394
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	427, 461
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	426
ApaLI	GTGCAC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	3 cut(s)	113, 176, 413
BciVI	GTATCC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	328
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	2 cut(s)	213, 214
BpmI	CTGGAG	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse3DI	GCAATG	2 cut(s)	226, 357
BseCI	ATCGAT	1 cut(s)	171
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	2 cut(s)	226, 357
BseMII	CTCAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	20
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	30, 172, 432, 466
Bsp1720I	GCTNAGC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	427, 461
BsrDI	GCAATG	2 cut(s)	226, 357
BssMI	GATC	4 cut(s)	30, 172, 432, 466
BssNI	GRCGYC	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	9, 144
BstACI	GRCGYC	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	45, 289
BstF5I	GGATG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	33, 175, 435, 469
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	4 cut(s)	30, 172, 432, 466
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	30, 432
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	2 cut(s)	30, 432
Bsu15I	ATCGAT	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	243, 414
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	171
CviAII	CATG	4 cut(s)	63, 79, 91, 374
CviJI	RGCY	4 cut(s)	167, 180, 394, 428
CviKI_1	RGCY	4 cut(s)	167, 180, 394, 428
DdeI	CTNAG	2 cut(s)	45, 289
DpnI	GATC	4 cut(s)	32, 174, 434, 468
DpnII	GATC	4 cut(s)	30, 172, 432, 466
EaeI	YGGCCR	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	4 cut(s)	66, 82, 94, 377
FaiI	YATR	7 cut(s)	64, 80, 92, 132, 240, 319, 375
FatI	CATG	4 cut(s)	62, 78, 90, 373
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	160
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	66, 82, 94, 377
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	102, 261, 440, 458
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	4 cut(s)	136, 254, 272, 380
Hpy188I	TCNGA	3 cut(s)	20, 48, 266
Hpy188III	TCNNGA	5 cut(s)	34, 208, 233, 400, 455
Hpy8I	GTNNAC	4 cut(s)	136, 254, 272, 380
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	9, 144
HpyCH4IV	ACGT	5 cut(s)	13, 256, 268, 274, 382
HpyCH4V	TGCA	6 cut(s)	99, 112, 136, 227, 373, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	2 cut(s)	45, 289
HpySE526I	ACGT	5 cut(s)	13, 256, 268, 274, 382
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	4 cut(s)	66, 82, 94, 377
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	30, 172, 432, 466
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	71, 221, 376, 404
LweI	GCATC	2 cut(s)	213, 214
MaeII	ACGT	5 cut(s)	13, 256, 268, 274, 382
MaeIII	GTNAC	4 cut(s)	9, 383, 409, 459
MalI	GATC	4 cut(s)	32, 174, 434, 468
MboI	GATC	4 cut(s)	30, 172, 432, 466
MboII	GAAGA	1 cut(s)	117
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	2 cut(s)	30, 432
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	24, 326
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	96, 325, 398, 459
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	4 cut(s)	30, 172, 432, 466
NlaIII	CATG	4 cut(s)	66, 82, 94, 377
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	4 cut(s)	9, 383, 409, 459
NsiI	ATGCAT	1 cut(s)	375
PaeR7I	CTCGAG	1 cut(s)	455
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	102, 261, 440
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	161
Ple19I	CGATCG	1 cut(s)	175
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	2 cut(s)	30, 432
PvuI	CGATCG	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	4 cut(s)	30, 172, 432, 466
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	9 cut(s)	16, 54, 182, 259, 271, 277, 385, 390, 396
SfaNI	GCATC	2 cut(s)	213, 214
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	233, 455
SmoI	CTYRAG	2 cut(s)	233, 455
Sse9I	AATT	2 cut(s)	24, 326
SsiI	CCGC	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	9, 144
TaiI	ACGT	5 cut(s)	16, 259, 271, 277, 385
TaqI	TCGA	4 cut(s)	105, 171, 195, 456
TasI	AATT	2 cut(s)	24, 326
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	102, 261, 440
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	250, 414
TseFI	GTSAC	4 cut(s)	9, 383, 409, 459
Tsp45I	GTSAC	4 cut(s)	9, 383, 409, 459
TspDTI	ATGAA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	250, 414
Van91I	CCANNNNNTGG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.