RchiOBHm_Chr6g0277551

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
40073845 .. 40075817
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24898

Sequence Viewer

Length: 1314 bp
ATGTCTAACGAAGGCTCGGAAGAAAAGCACGATACCCTTGGTAAAAAGATTGATGTGAAACAAGCCCAAGTTCAAGGACTTACTGACAATTCCAAGAGGATTTTTGTGGGAGGTCTACCACATGATCTAAGAGATGAAGAATTCAAGAACTACTTTGAGAAGTTTGGTAAAATTACAGATTGGGATGTAATGTTTGATAAGGAAAACCACAAACCTAGGGGGTTTGGATTCATCACTTTTGAGTCAGAGGAGGCTGTGCATGATGTGTTGCAGAAGAGGTTTCATGACTTGAATTACAAGTCTGTAGTGGTAAAGAGAGCTCACAGTCAGAATAGGAATAACAACAGGCTCATGAAACAGTATGATCGCTACAATGTAGCTCCTAATGGGTATAGATACGGTGTAGGGTATACGTCTGGTAATAATCCTGGAACTTTGGGGCATTATAATCCATATTGCAGTAGTTATGTAGCACCTTATGGACATAGATATGGTGGGTTTTTGCACGATCCGAATCCTTATGATGCTTGGGTATATACAGCTGATTATGGCTTATGGGGTGGTCAGAATGCTAACAACTCCAATATCCGAAGCTGGACGGAGCTCCCTGATGATGTTACCGCAATGATACTGTCACGTCTAGGAGCAATTGAGATCTTGAAAACTGCTCAGAAGGTCTGCATGACATGGCGCAAAATAAGCAAGGACCCTCTTATGTGGTGCAGAATCGACTTGCACAACGATGGTTCTTATTATAGTCAGTTGGACAAAATATGCCGCCAAGCCATTGATCGTAGCTCTGGTAAACTGGTCGATATCAGCATCCGGAACTTTGGCAATGATGCACTTCTTGAGTATATCACTGATAGTTCACCTAGAATCAGACGTCTTCGTTTGGATAGTTGCCCAGTAACTGACAAGGGATTAAGTAAAGTAGCTTCCAAACTTCCGCTGCTGGAGGACCTTGAAATTTCACACACAAACTCTTGCTCAGGCGAATCTCTTGAAGCAATAGGGCGCTCTTGCCCTCTCTTAACATCAATGAAGTATAAGGACGGATGGCAGGTATGGTTCAAATTTGATGATACTAATGAACAAGCACTTGCCATAGCCGGAACAATGCATGGTTTACGCTACCTCCAGCTTTTAGGGAATGCGGTGACTAATGATGGATTGGCCAAGATCCTTGATTCTTGGCCTCATCTCGAGTCACTTGATCTGAGATGTTGTTTCAATCTTAATTTGGGAGGAGATTTGCAGAGAAGATGTTCTACACAAGTTAAAACACATCAACTTCCCGGAGGATCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

49.64

Weight (kDa)

7.59

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 31 - 102 2.6e-10 RNA recognition motif
RRM_1 PF00076 34 - 92 2.6e-15 RNA recognition motif
F-box-like PF12937 199 - 245 7.2e-08 F-box-like
F-box PF00646 199 - 241 5.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AatII GACGTC 1 cut(s) 889
Acc36I ACCTGC 1 cut(s) 1054
AccI GTMKAC 2 cut(s) 115, 410
AccIII TCCGGA 1 cut(s) 825
AciI CCGC 4 cut(s) 621, 778, 950, 1157
AclWI GGATC 3 cut(s) 503, 1177, 1312
AcoI YGGCCR 1 cut(s) 1176
AcsI RAATTY 3 cut(s) 140, 969, 1076
AcyI GRCGYC 1 cut(s) 886
AgsI TTSAA 8 cut(s) 74, 145, 292, 661, 968, 1007, 1075, 1234
AjiI CACGTC 1 cut(s) 638
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 8 cut(s) 320, 380, 542, 594, 604, 798, 938, 1144
AluI AGCT 8 cut(s) 320, 380, 542, 594, 604, 798, 938, 1144
Alw21I GWGCWC 2 cut(s) 322, 606
AlwI GGATC 3 cut(s) 503, 1177, 1312
AlwNI CAGNNNCTG 1 cut(s) 914
Ama87I CYCGRG 1 cut(s) 1205
Aor13HI TCCGGA 1 cut(s) 825
AoxI GGCC 2 cut(s) 1176, 1196
ApeKI GCWGC 1 cut(s) 952
ApoI RAATTY 3 cut(s) 140, 969, 1076
Asp700I GAANNNNTTC 1 cut(s) 1267
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 2 cut(s) 693, 1020
AspS9I GGNCC 2 cut(s) 706, 961
AsuC2I CCSGG 1 cut(s) 1299
AsuHPI GGTGA 2 cut(s) 864, 1171
AvaI CYCGRG 1 cut(s) 1205
AvaII GGWCC 2 cut(s) 706, 961
AvrII CCTAGG 1 cut(s) 215
BalI TGGCCA 1 cut(s) 1178
BanII GRGCYC 2 cut(s) 322, 606
BarI GAAGNNNNNNTAC 4 cut(s) 922, 954, 1255, 1287
BbsI GAAGAC 1 cut(s) 881
Bbv12I GWGCWC 2 cut(s) 322, 606
BbvI GCAGC 1 cut(s) 939
BccI CCATC 3 cut(s) 737, 1053, 1163
BciT130I CCWGG 1 cut(s) 429
BcnI CCSGG 1 cut(s) 1299
BfaI CTAG 3 cut(s) 216, 641, 876
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 1021
BfuAI ACCTGC 1 cut(s) 1054
BglII AGATCT 1 cut(s) 654
BisI GCNGC 2 cut(s) 778, 953
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 2 cut(s) 779, 954
Bme1390I CCNGG 2 cut(s) 429, 1299
Bme18I GGWCC 2 cut(s) 706, 961
BmeT110I CYCGRG 1 cut(s) 1205
BmgBI CACGTC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 706, 961
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 2 cut(s) 429, 1299
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 3 cut(s) 514, 831, 832
BmuI ACTGGG 1 cut(s) 902
BpiI GAAGAC 1 cut(s) 881
BpmI CTGGAG 2 cut(s) 977, 1124
Bpu10I CCTNAGC 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 1299
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 886
BsaJI CCNNGG 2 cut(s) 37, 215
BsaWI WCCGGW 1 cut(s) 825
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bse1I ACTGG 2 cut(s) 813, 908
Bse3DI GCAATG 2 cut(s) 630, 844
Bse8I GATNNNNATC 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 825
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 37, 215
BseGI GGATG 3 cut(s) 190, 822, 1064
BseJI GATNNNNATC 1 cut(s) 513
BseMI GCAATG 2 cut(s) 630, 844
BseMII CTCAG 3 cut(s) 683, 1005, 1211
BseNI ACTGG 2 cut(s) 813, 908
BseRI GAGGAG 2 cut(s) 263, 1263
BseXI GCAGC 1 cut(s) 939
BsgI GTGCAG 1 cut(s) 742
BshFI GGCC 2 cut(s) 1178, 1198
BsiHKAI GWGCWC 2 cut(s) 322, 606
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 3 cut(s) 826, 1113, 1299
BsmI GAATGC 2 cut(s) 574, 1159
BsnI GGCC 2 cut(s) 1178, 1198
BsoBI CYCGRG 1 cut(s) 1205
Bsp1286I GDGCHC 2 cut(s) 322, 606
Bsp13I TCCGGA 1 cut(s) 825
Bsp143I GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
BspACI CCGC 4 cut(s) 621, 778, 950, 1157
BspANI GGCC 2 cut(s) 1178, 1198
BspCNI CTCAG 3 cut(s) 682, 1004, 1212
BspEI TCCGGA 1 cut(s) 825
BspHI TCATGA 2 cut(s) 283, 351
BspLI GGNNCC 1 cut(s) 708
BspMI ACCTGC 1 cut(s) 1054
BspPI GGATC 3 cut(s) 503, 1177, 1312
BsrDI GCAATG 2 cut(s) 630, 844
BsrI ACTGG 2 cut(s) 813, 908
BssECI CCNNGG 2 cut(s) 37, 215
BssMI GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
BssNAI GTATAC 1 cut(s) 411
BssNI GRCGYC 1 cut(s) 886
BssT1I CCWWGG 2 cut(s) 37, 215
Bst1107I GTATAC 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 4 cut(s) 326, 360, 401, 633
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 886
BstDEI CTNAG 4 cut(s) 128, 669, 991, 1220
BstF5I GGATG 3 cut(s) 190, 822, 1064
BstH2I RGCGCY 1 cut(s) 1021
BstHHI GCGC 2 cut(s) 693, 1020
BstKTI GATC 8 cut(s) 127, 367, 511, 657, 793, 1185, 1219, 1307
BstMBI GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
BstMWI GCNNNNNNNGC 1 cut(s) 699
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 427, 1297
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 939
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 2 cut(s) 654, 1182
BstYI RGATCY 2 cut(s) 654, 1182
BstZ17I GTATAC 1 cut(s) 411
BsuRI GGCC 2 cut(s) 1178, 1198
BtrI CACGTC 1 cut(s) 638
BtsCI GGATG 3 cut(s) 190, 822, 1064
BtsIMutI CAGTG 1 cut(s) 861
BveI ACCTGC 1 cut(s) 1054
CaiI CAGNNNCTG 1 cut(s) 914
CciI TCATGA 2 cut(s) 283, 351
CfoI GCGC 2 cut(s) 693, 1020
Cfr13I GGNCC 2 cut(s) 706, 961
CviAII CATG 7 cut(s) 122, 260, 284, 352, 682, 687, 1124
DdeI CTNAG 4 cut(s) 128, 669, 991, 1220
DpnI GATC 8 cut(s) 126, 366, 510, 656, 792, 1184, 1218, 1306
DpnII GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
EaeI YGGCCR 1 cut(s) 1176
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 320, 604
Eco130I CCWWGG 2 cut(s) 37, 215
Eco24I GRGCYC 2 cut(s) 322, 606
Eco32I GATATC 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 706, 961
Eco53kI GAGCTC 2 cut(s) 320, 604
Eco88I CYCGRG 1 cut(s) 1205
EcoICRI GAGCTC 2 cut(s) 320, 604
EcoO109I RGGNCCY 2 cut(s) 706, 961
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 37, 215
EcoT22I ATGCAT 1 cut(s) 1125
EcoT38I GRGCYC 2 cut(s) 322, 606
ErhI CCWWGG 2 cut(s) 37, 215
FaeI CATG 7 cut(s) 125, 263, 287, 355, 685, 690, 1127
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 7 cut(s) 121, 259, 283, 351, 681, 686, 1123
FblI GTMKAC 2 cut(s) 115, 410
Fnu4HI GCNGC 2 cut(s) 778, 953
FokI GGATG 3 cut(s) 197, 809, 1071
FriOI GRGCYC 2 cut(s) 322, 606
Fsp4HI GCNGC 2 cut(s) 778, 953
FspBI CTAG 3 cut(s) 216, 641, 876
GlaI GCGC 2 cut(s) 692, 1019
GluI GCNGC 2 cut(s) 778, 953
GsuI CTGGAG 2 cut(s) 977, 1124
HaeII RGCGCY 1 cut(s) 1021
HaeIII GGCC 2 cut(s) 1178, 1198
HapII CCGG 3 cut(s) 826, 1113, 1299
HhaI GCGC 2 cut(s) 693, 1020
Hin1I GRCGYC 1 cut(s) 886
Hin1II CATG 7 cut(s) 125, 263, 287, 355, 685, 690, 1127
Hin6I GCGC 2 cut(s) 691, 1018
HinP1I GCGC 2 cut(s) 691, 1018
HinfI GANTC 8 cut(s) 228, 242, 514, 726, 879, 998, 1190, 1208
HpaII CCGG 3 cut(s) 826, 1113, 1299
HphI GGTGA 2 cut(s) 864, 1171
Hpy166II GTNNAC 5 cut(s) 116, 411, 806, 872, 1130
Hpy188I TCNGA 9 cut(s) 19, 247, 330, 513, 567, 590, 672, 884, 1221
Hpy188III TCNNGA 8 cut(s) 145, 284, 352, 658, 826, 851, 1004, 1205
Hpy8I GTNNAC 5 cut(s) 116, 411, 806, 872, 1130
HpyAV CCTTC 2 cut(s) 5, 667
HpyCH4III ACNGT 4 cut(s) 326, 360, 401, 633
HpyCH4IV ACGT 3 cut(s) 413, 637, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 699
HpyF3I CTNAG 4 cut(s) 128, 669, 991, 1220
HpySE526I ACGT 3 cut(s) 413, 637, 886
Hsp92I GRCGYC 1 cut(s) 886
Hsp92II CATG 7 cut(s) 125, 263, 287, 355, 685, 690, 1127
HspAI GCGC 2 cut(s) 691, 1018
Kpn2I TCCGGA 1 cut(s) 825
Kzo9I GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
LmnI GCTCC 4 cut(s) 385, 601, 609, 644
Lsp1109I GCAGC 1 cut(s) 939
LweI GCATC 3 cut(s) 514, 831, 832
MaeI CTAG 3 cut(s) 216, 641, 876
MaeII ACGT 3 cut(s) 413, 637, 886
MaeIII GTNAC 5 cut(s) 616, 633, 910, 1159, 1209
MalI GATC 8 cut(s) 126, 366, 510, 656, 792, 1184, 1218, 1306
MboI GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
MboII GAAGA 5 cut(s) 32, 149, 286, 881, 1275
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 654, 1182
MhlI GDGCHC 2 cut(s) 322, 606
MlsI TGGCCA 1 cut(s) 1178
MluCI AATT 8 cut(s) 88, 140, 171, 292, 648, 969, 1076, 1240
MluNI TGGCCA 1 cut(s) 1178
MlyI GAGTC 2 cut(s) 251, 1217
MmeI TCCRAC 1 cut(s) 744
Mox20I TGGCCA 1 cut(s) 1178
Mph1103I ATGCAT 1 cut(s) 1125
MroI TCCGGA 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 1267
MscI TGGCCA 1 cut(s) 1178
MseI TTAA 4 cut(s) 926, 1034, 1239, 1281
MslI CAYNNNNRTG 2 cut(s) 489, 741
Msp20I TGGCCA 1 cut(s) 1178
MspA1I CMGCKG 2 cut(s) 542, 952
MspI CCGG 3 cut(s) 826, 1113, 1299
MspR9I CCNGG 2 cut(s) 429, 1299
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 2 cut(s) 574, 1159
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 699
NciI CCSGG 1 cut(s) 1299
NdeII GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
NlaIII CATG 7 cut(s) 125, 263, 287, 355, 685, 690, 1127
NlaIV GGNNCC 1 cut(s) 708
NmuCI GTSAC 3 cut(s) 633, 1159, 1209
NsiI ATGCAT 1 cut(s) 1125
PaeR7I CTCGAG 1 cut(s) 1205
PagI TCATGA 2 cut(s) 283, 351
PctI GAATGC 2 cut(s) 574, 1159
PdmI GAANNNNTTC 1 cut(s) 1267
PfeI GAWTC 6 cut(s) 228, 514, 726, 879, 998, 1190
PfoI TCCNGGA 2 cut(s) 427, 1297
PkrI GCNGC 2 cut(s) 779, 954
PleI GAGTC 2 cut(s) 250, 1216
PpsI GAGTC 2 cut(s) 250, 1216
PpuMI RGGWCCY 2 cut(s) 706, 961
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 2 cut(s) 322, 606
Psp5II RGGWCCY 2 cut(s) 706, 961
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 708
PspPI GGNCC 2 cut(s) 706, 961
PspPPI RGGWCCY 2 cut(s) 706, 961
PstNI CAGNNNCTG 1 cut(s) 914
PsuI RGATCY 2 cut(s) 654, 1182
PvuII CAGCTG 1 cut(s) 542
RseI CAYNNNNRTG 2 cut(s) 489, 741
SacI GAGCTC 2 cut(s) 322, 606
SaqAI TTAA 4 cut(s) 926, 1034, 1239, 1281
SatI GCNGC 2 cut(s) 778, 953
Sau3AI GATC 8 cut(s) 124, 364, 508, 654, 790, 1182, 1216, 1304
Sau96I GGNCC 2 cut(s) 706, 961
SchI GAGTC 2 cut(s) 251, 1217
ScrFI CCNGG 2 cut(s) 429, 1299
SduI GDGCHC 2 cut(s) 322, 606
SfaNI GCATC 3 cut(s) 514, 831, 832
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 1205
SinI GGWCC 2 cut(s) 706, 961
SlaI CTCGAG 1 cut(s) 1205
SmiMI CAYNNNNRTG 2 cut(s) 489, 741
SmlI CTYRAG 2 cut(s) 851, 1205
SmoI CTYRAG 2 cut(s) 851, 1205
Sse9I AATT 8 cut(s) 88, 140, 171, 292, 648, 969, 1076, 1240
SsiI CCGC 4 cut(s) 621, 778, 950, 1157
SspMI CTAG 3 cut(s) 216, 641, 876
SstI GAGCTC 2 cut(s) 322, 606
StyD4I CCNGG 2 cut(s) 427, 1297
StyI CCWWGG 2 cut(s) 37, 215
TaaI ACNGT 4 cut(s) 326, 360, 401, 633
TaiI ACGT 3 cut(s) 416, 640, 889
TaqI TCGA 3 cut(s) 729, 813, 1206
TasI AATT 8 cut(s) 88, 140, 171, 292, 648, 969, 1076, 1240
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 6 cut(s) 228, 514, 726, 879, 998, 1190
Tru1I TTAA 4 cut(s) 926, 1034, 1239, 1281
Tru9I TTAA 4 cut(s) 926, 1034, 1239, 1281
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 3 cut(s) 633, 1159, 1209
TseI GCWGC 1 cut(s) 952
Tsp45I GTSAC 3 cut(s) 633, 1159, 1209
TspDTI ATGAA 6 cut(s) 150, 220, 272, 368, 1058, 1107
TspGWI ACGGA 2 cut(s) 614, 1071
TspRI CASTG 1 cut(s) 868
VpaK11BI GGWCC 2 cut(s) 706, 961
XapI RAATTY 3 cut(s) 140, 969, 1076
XhoI CTCGAG 1 cut(s) 1205
XmaJI CCTAGG 1 cut(s) 215
XmiI GTMKAC 2 cut(s) 115, 410
XmnI GAANNNNTTC 1 cut(s) 1267
XspI CTAG 3 cut(s) 216, 641, 876
ZraI GACGTC 1 cut(s) 887
Zsp2I ATGCAT 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.