RLG00000032172

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006429
Physical Location & Seq
Forward (+)
11783974 .. 11792305
8332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032172

Sequence Viewer

Length: 795 bp
ATGTCTTACGAAGGCTTGAAAGGAATCACAGTATCTTTGAACACGATCGATGTGAAACCACACATCCCAATGGGTGAGAAAAACAAAAACCAGGAGGACCAAAATGCTGAAGGTTATAATTCCAAAAGGATTTTTGTGGGAGGGAAATTAAACAACATGCCTAGGGGATTTGGATTCGTCACTTTTGATTCAGAGGAGGCTGTGGAGGATGTGTTGCGCAAGAGTGACCTTCGGACTCCTATTTCTTGGGCACATTCAATTGATTATGGTGTATGGGGTAGTGAAGTTGCTAACAGCCCCAAGTCAACTAGCCGAAACTGGACGGAGCTCCCAGATGATGTTACCGCGTTGATATTGTCACGTCTAGGAGCAATCGAGATCTTAGGGACTGTTCAGAAGTCTTACCAGAGTGGCCTTTGCGCAATTGCCCGGAATGCAGCTTCTGAGCATTCAAGTTTCAAGTATAATGGCAGCTGGCAGAGATTTTACAAATGTAGGGCTACTAATGAAGATGCACTTGCCATAGCGGAAACAATACATGGTTTACGCCAATTACAGCTTTTTGGGAATGCAGTGACTAATGATGGCTTGGCAAAGATTCTTGATTGTTGCCCTCATCTTGAGTCACTTGATCTGCGGGATTGTTTCAATCTTAATCTGGGAGGAGATTTGGAAATAAGATGTTCTAAACAAATTAAAAGACTGCAGCTTCCAGAGGATTGTCCTGATGATGATTCTGAATCAATCGAGTCTTTTGGAGCATATGAATTTCGATGCTTTACTATGTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

265

Amino Acids

29.49

Weight (kDa)

5.14

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
Acc16I TGCGCA 2 cut(s) 218, 421
AccII CGCG 1 cut(s) 347
AciI CCGC 3 cut(s) 345, 527, 637
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 788
AgsI TTSAA 6 cut(s) 19, 40, 258, 453, 460, 649
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 328, 440, 474, 559, 709
AluI AGCT 5 cut(s) 328, 440, 474, 559, 709
Alw21I GWGCWC 1 cut(s) 330
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 437, 471, 706
ApoI RAATTY 1 cut(s) 767
AspA2I CCTAGG 1 cut(s) 161
AspLEI GCGC 2 cut(s) 219, 422
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 449, 483, 718
BccI CCATC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 1 cut(s) 430
BfaI CTAG 3 cut(s) 162, 309, 365
BfmI CTRYAG 1 cut(s) 704
BglII AGATCT 1 cut(s) 378
BisI GCNGC 3 cut(s) 438, 472, 707
BlnI CCTAGG 1 cut(s) 161
BlsI GCNGC 3 cut(s) 439, 473, 708
Bme1390I CCNGG 2 cut(s) 92, 430
Bme18I GGWCC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 2 cut(s) 92, 430
BmsI GCATC 2 cut(s) 502, 764
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 63, 214
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 209, 678
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 3 cut(s) 449, 483, 718
Bsh1236I CGCG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 414
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 3 cut(s) 439, 448, 574
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 253, 330
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 3 cut(s) 45, 378, 631
BspACI CCGC 3 cut(s) 345, 527, 637
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 436
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 45, 378, 631
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 31, 391
BstAUI TGTACA 1 cut(s) 786
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 382, 444
BstF5I GGATG 2 cut(s) 63, 214
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 219, 422
BstKTI GATC 3 cut(s) 48, 381, 634
BstMBI GATC 3 cut(s) 45, 378, 631
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 90, 428
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 449, 483, 718
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 1 cut(s) 414
BsuTUI ATCGAT 1 cut(s) 48
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 63, 214
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 2 cut(s) 219, 422
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 787
CviAII CATG 2 cut(s) 157, 539
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 2 cut(s) 382, 444
DpnI GATC 3 cut(s) 47, 380, 633
DpnII GATC 3 cut(s) 45, 378, 631
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 160, 542
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 400
FatI CATG 2 cut(s) 156, 538
FauI CCCGC 1 cut(s) 630
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 438, 472, 707
FokI GGATG 2 cut(s) 50, 221
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 3 cut(s) 438, 472, 707
FspBI CTAG 3 cut(s) 162, 309, 365
FspI TGCGCA 2 cut(s) 218, 421
GlaI GCGC 2 cut(s) 218, 421
GluI GCNGC 3 cut(s) 438, 472, 707
HaeIII GGCC 1 cut(s) 414
HapII CCGG 1 cut(s) 430
HhaI GCGC 2 cut(s) 219, 422
Hin1II CATG 2 cut(s) 160, 542
Hin6I GCGC 2 cut(s) 217, 420
HinP1I GCGC 2 cut(s) 217, 420
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 9 cut(s) 24, 174, 188, 235, 598, 623, 734, 740, 749
HpaII CCGG 1 cut(s) 430
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 306, 545
Hpy188I TCNGA 5 cut(s) 193, 234, 396, 445, 739
Hpy188III TCNNGA 5 cut(s) 376, 602, 620, 713, 725
Hpy8I GTNNAC 2 cut(s) 306, 545
HpyAV CCTTC 3 cut(s) 5, 104, 239
HpyCH4III ACNGT 2 cut(s) 31, 391
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 4 cut(s) 437, 515, 572, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 2 cut(s) 382, 444
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 2 cut(s) 160, 542
HspAI GCGC 2 cut(s) 217, 420
Kzo9I GATC 3 cut(s) 45, 378, 631
LmnI GCTCC 4 cut(s) 325, 333, 368, 758
Lsp1109I GCAGC 3 cut(s) 449, 483, 718
LweI GCATC 2 cut(s) 502, 764
MaeI CTAG 3 cut(s) 162, 309, 365
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 6 cut(s) 178, 224, 340, 357, 574, 624
MalI GATC 3 cut(s) 47, 380, 633
MboI GATC 3 cut(s) 45, 378, 631
MboII GAAGA 1 cut(s) 521
MfeI CAATTG 2 cut(s) 258, 423
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 2 cut(s) 253, 330
MluCI AATT 7 cut(s) 118, 146, 258, 423, 551, 693, 767
MlyI GAGTC 3 cut(s) 229, 632, 758
MnlI CCTC 8 cut(s) 88, 134, 187, 190, 199, 624, 656, 709
MseI TTAA 3 cut(s) 149, 654, 696
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 2 cut(s) 92, 430
MunI CAATTG 2 cut(s) 258, 423
Mva1269I GAATGC 3 cut(s) 439, 448, 574
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 434
NciI CCSGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 763
NdeII GATC 3 cut(s) 45, 378, 631
NlaIII CATG 2 cut(s) 160, 542
NmuCI GTSAC 5 cut(s) 178, 224, 357, 574, 624
NsbI TGCGCA 2 cut(s) 218, 421
NspI RCATGY 1 cut(s) 160
PctI GAATGC 3 cut(s) 439, 448, 574
PfeI GAWTC 6 cut(s) 24, 174, 188, 598, 734, 740
PkrI GCNGC 3 cut(s) 439, 473, 708
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 3 cut(s) 229, 631, 757
PpsI GAGTC 3 cut(s) 229, 631, 757
PsiI TTATAA 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 378
PvuI CGATCG 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 474
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 149, 654, 696
SatI GCNGC 3 cut(s) 438, 472, 707
Sau3AI GATC 3 cut(s) 45, 378, 631
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 3 cut(s) 229, 632, 758
ScrFI CCNGG 2 cut(s) 92, 430
SduI GDGCHC 2 cut(s) 253, 330
SetI ASST 8 cut(s) 115, 231, 330, 364, 442, 476, 561, 711
SfaNI GCATC 2 cut(s) 502, 764
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 7 cut(s) 118, 146, 258, 423, 551, 693, 767
SsiI CCGC 3 cut(s) 345, 527, 637
SspMI CTAG 3 cut(s) 162, 309, 365
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 90, 428
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 31, 391
TaiI ACGT 1 cut(s) 364
TaqI TCGA 4 cut(s) 48, 375, 747, 772
TasI AATT 7 cut(s) 118, 146, 258, 423, 551, 693, 767
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 6 cut(s) 24, 174, 188, 598, 734, 740
Tru1I TTAA 3 cut(s) 149, 654, 696
Tru9I TTAA 3 cut(s) 149, 654, 696
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 5 cut(s) 178, 224, 357, 574, 624
TseI GCWGC 3 cut(s) 437, 471, 706
Tsp45I GTSAC 5 cut(s) 178, 224, 357, 574, 624
TspDTI ATGAA 2 cut(s) 522, 780
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 767
XceI RCATGY 1 cut(s) 160
XmaJI CCTAGG 1 cut(s) 161
XspI CTAG 3 cut(s) 162, 309, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.