Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001846.1

Orthogroup ID

OG0006429

Physical Location & Seq

Genomic Coordinates Reverse (-)

108519 .. 109943

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001846.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggagattgatgtgaaacaagcccaagttcaaggattttctaacaattccaagaggatttttgtgggaggtctaccacatgatctaagagatgaagaattcaagaactactttgagaagtttggtaaaattacagattgggatgtaatgtttgataaggaaaaccacaaacctagggggtttggattcatcacttatgagtcagaggaggctgtgcatgatgtgttgcagaagaggtttcatgacttgaatcacaagtctgtagaggtaaagagagctcaccctcagaataggaataacaacaggctcatgaaacagtatgatcgctacaatgtagctcctaatgggtatagatacggtgtagggtatacgtctggtaataatcctggaactttggggcattataatccatattgcagtagttatgtagcaccttatggatatagatatggtgctgggtttttgcacgatccgaatccttataatgcttgggtatatacagctgattatggcttatggggtggtcagaatgctaacaactccaatatccgaagctggacggagcttcctgatgatgttaccgcaatgatactgtcacgtctaggtgcaattgagatcttgaaaactgctcagaaggtttgcatgacatggcgcaaaataagcaaggaccctcttatgtggtgcagaatcgacttgcacaacgatggttcttattatagtcagttggacaaaatgtgccgccaagccattgatcgtaggctcgtagctgtggtatggttcaaatttgatgatactaatgaacaagcacttgccatagccggaacaatgcatggtttacgctacctccagcttttagggaatgcggtgactaatgatggattggccaagatccttgattcttgtcctcatctcgagtcacttgatctgagatattgtttcaatcttaatttgggaggagatttgcagagaagatgttctacacaagttaaaacacatcaacttcccggaggatcattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

339

Amino Acids

38.93

Weight (kDa)

8.34

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015111 RchiOBHm_Chr6g0277551
rosa_laevigata	RLG00000013293 RLG00000032172
rosa_multiflora	Rmu_co8060368.1_g000001 Rmu_co8498617.1_g000001 Rmu_sc0001846.1_g000030 Rmu_sc0002209.1_g000005 Rmu_sc0002209.1_g000006 Rmu_sc0003910.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061410 Rroxscaffold_1G00061420 Rroxscaffold_7G00191220
rosa_rugosa	Rorug05G0024500 Rorug05G0024500 Rorug06G0109600 Rorug06G0109600
rosa_samantha	Rh5AG118800 Rh5BG116700 Rh5BG116800 Rh5CG127800 Rh5DG115700 Rh6AG220000 Rh6BG223900 Rh6CG226200 Rh6DG216800
rosa_wichuraiana	Rw6G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	405, 483
AccI	GTMKAC	2 cut(s)	73, 368
AciI	CCGC	3 cut(s)	582, 739, 863
AclWI	GGATC	3 cut(s)	464, 883, 1018
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	2 cut(s)	98, 782
AgsI	TTSAA	6 cut(s)	32, 103, 250, 622, 781, 940
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	7 cut(s)	278, 338, 503, 555, 565, 767, 850
AluI	AGCT	7 cut(s)	278, 338, 503, 555, 565, 767, 850
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	3 cut(s)	464, 883, 1018
Ama87I	CYCGRG	1 cut(s)	911
AoxI	GGCC	1 cut(s)	882
ApoI	RAATTY	2 cut(s)	98, 782
Asp700I	GAANNNNTTC	1 cut(s)	973
AspA2I	CCTAGG	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	654
AspS9I	GGNCC	1 cut(s)	667
AsuC2I	CCSGG	1 cut(s)	1005
AsuHPI	GGTGA	2 cut(s)	272, 877
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	1 cut(s)	667
AvrII	CCTAGG	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	2 cut(s)	698, 869
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	1005
BfaI	CTAG	2 cut(s)	174, 602
BfmI	CTRYAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	1 cut(s)	739
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	740
Bme1390I	CCNGG	2 cut(s)	387, 1005
Bme18I	GGWCC	1 cut(s)	667
BmeT110I	CYCGRG	1 cut(s)	911
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	2 cut(s)	387, 1005
BpmI	CTGGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	1005
BsaBI	GATNNNNATC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	474
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	3 cut(s)	299, 644, 917
BseRI	GAGGAG	2 cut(s)	221, 969
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	884
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	2 cut(s)	819, 1005
BsmI	GAATGC	2 cut(s)	535, 865
BsnI	GGCC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	911
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
BspACI	CCGC	3 cut(s)	582, 739, 863
BspANI	GGCC	1 cut(s)	884
BspCNI	CTCAG	3 cut(s)	298, 643, 918
BspHI	TCATGA	2 cut(s)	241, 309
BspLI	GGNNCC	1 cut(s)	669
BspPI	GGATC	3 cut(s)	464, 883, 1018
BsrDI	GCAATG	1 cut(s)	591
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
BssNAI	GTATAC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	173
Bst1107I	GTATAC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	318, 359, 594
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	4 cut(s)	86, 285, 630, 926
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	8 cut(s)	85, 325, 472, 618, 754, 891, 925, 1013
BstMBI	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	660
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	385, 1003
BstSFI	CTRYAG	1 cut(s)	261
BstX2I	RGATCY	2 cut(s)	615, 888
BstYI	RGATCY	2 cut(s)	615, 888
BstZ17I	GTATAC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	884
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	148
CciI	TCATGA	2 cut(s)	241, 309
CfoI	GCGC	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	667
CviAII	CATG	7 cut(s)	80, 218, 242, 310, 643, 648, 830
DdeI	CTNAG	4 cut(s)	86, 285, 630, 926
DpnI	GATC	8 cut(s)	84, 324, 471, 617, 753, 890, 924, 1012
DpnII	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	7 cut(s)	83, 221, 245, 313, 646, 651, 833
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	7 cut(s)	79, 217, 241, 309, 642, 647, 829
FblI	GTMKAC	2 cut(s)	73, 368
Fnu4HI	GCNGC	1 cut(s)	739
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	739
FspBI	CTAG	2 cut(s)	174, 602
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	1 cut(s)	739
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	830
HaeIII	GGCC	1 cut(s)	884
HapII	CCGG	2 cut(s)	819, 1005
HhaI	GCGC	1 cut(s)	654
Hin1II	CATG	7 cut(s)	83, 221, 245, 313, 646, 651, 833
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HinfI	GANTC	7 cut(s)	186, 200, 250, 475, 687, 896, 914
HpaII	CCGG	2 cut(s)	819, 1005
HphI	GGTGA	2 cut(s)	272, 877
Hpy166II	GTNNAC	3 cut(s)	74, 369, 836
Hpy188I	TCNGA	7 cut(s)	205, 288, 474, 528, 551, 633, 927
Hpy188III	TCNNGA	6 cut(s)	103, 242, 310, 569, 619, 911
Hpy8I	GTNNAC	3 cut(s)	74, 369, 836
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	3 cut(s)	318, 359, 594
HpyCH4IV	ACGT	2 cut(s)	371, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	660
HpyF3I	CTNAG	4 cut(s)	86, 285, 630, 926
HpySE526I	ACGT	2 cut(s)	371, 598
Hsp92II	CATG	7 cut(s)	83, 221, 245, 313, 646, 651, 833
HspAI	GCGC	1 cut(s)	652
Kzo9I	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
LmnI	GCTCC	2 cut(s)	343, 562
LpnPI	CCDG	9 cut(s)	289, 360, 372, 399, 441, 541, 582, 832, 860
MaeI	CTAG	2 cut(s)	174, 602
MaeII	ACGT	2 cut(s)	371, 598
MaeIII	GTNAC	4 cut(s)	577, 594, 865, 915
MalI	GATC	8 cut(s)	84, 324, 471, 617, 753, 890, 924, 1012
MboI	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
MboII	GAAGA	3 cut(s)	107, 244, 981
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	615, 888
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	6 cut(s)	46, 98, 129, 609, 782, 946
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	2 cut(s)	209, 923
MmeI	TCCRAC	1 cut(s)	705
Mox20I	TGGCCA	1 cut(s)	884
Mph1103I	ATGCAT	1 cut(s)	831
MroXI	GAANNNNTTC	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	2 cut(s)	945, 987
MslI	CAYNNNNRTG	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	2 cut(s)	819, 1005
MspR9I	CCNGG	2 cut(s)	387, 1005
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	2 cut(s)	535, 865
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	660
NciI	CCSGG	1 cut(s)	1005
NdeII	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
NlaIII	CATG	7 cut(s)	83, 221, 245, 313, 646, 651, 833
NlaIV	GGNNCC	1 cut(s)	669
NmuCI	GTSAC	3 cut(s)	594, 865, 915
NsiI	ATGCAT	1 cut(s)	831
PaeR7I	CTCGAG	1 cut(s)	911
PagI	TCATGA	2 cut(s)	241, 309
PctI	GAATGC	2 cut(s)	535, 865
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	5 cut(s)	186, 250, 475, 687, 896
PfoI	TCCNGGA	2 cut(s)	385, 1003
PkrI	GCNGC	1 cut(s)	740
PleI	GAGTC	2 cut(s)	208, 922
PpsI	GAGTC	2 cut(s)	208, 922
PpuMI	RGGWCCY	1 cut(s)	667
PsiI	TTATAA	2 cut(s)	405, 483
Psp124BI	GAGCTC	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	1 cut(s)	667
PspPPI	RGGWCCY	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	615, 888
PvuII	CAGCTG	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	702
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	945, 987
SatI	GCNGC	1 cut(s)	739
Sau3AI	GATC	8 cut(s)	82, 322, 469, 615, 751, 888, 922, 1010
Sau96I	GGNCC	1 cut(s)	667
SchI	GAGTC	2 cut(s)	209, 923
ScrFI	CCNGG	2 cut(s)	387, 1005
SduI	GDGCHC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	911
SinI	GGWCC	1 cut(s)	667
SlaI	CTCGAG	1 cut(s)	911
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	6 cut(s)	46, 98, 129, 609, 782, 946
SsiI	CCGC	3 cut(s)	582, 739, 863
SspMI	CTAG	2 cut(s)	174, 602
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	385, 1003
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	3 cut(s)	318, 359, 594
TaiI	ACGT	2 cut(s)	374, 601
TaqI	TCGA	2 cut(s)	690, 912
TasI	AATT	6 cut(s)	46, 98, 129, 609, 782, 946
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	5 cut(s)	186, 250, 475, 687, 896
Tru1I	TTAA	2 cut(s)	945, 987
Tru9I	TTAA	2 cut(s)	945, 987
TseFI	GTSAC	3 cut(s)	594, 865, 915
Tsp45I	GTSAC	3 cut(s)	594, 865, 915
TspDTI	ATGAA	5 cut(s)	108, 178, 230, 326, 813
TspGWI	ACGGA	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	2 cut(s)	98, 782
XhoI	CTCGAG	1 cut(s)	911
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	2 cut(s)	73, 368
XmnI	GAANNNNTTC	1 cut(s)	973
XspI	CTAG	2 cut(s)	174, 602
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.