Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006429

Physical Location & Seq

Genomic Coordinates Reverse (-)

83563913 .. 83564717

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATATGGATACCACTGGAGGGTTTGTGTATGTTCCAAATCCTTATAGTGACCTTCGGACTCCTATTTCTTGGGCACATTCAATTGATTATGGTGTATGGGGTAGTGAAGTTGCTAAAAGCCCCAAGTCAACTAGCCGAAACTGGACGGAGCTCCCAGATGATGTTACCGCGTTGATATTGTCACGTCTAGGAGTAATCGAGATCTTAAGGACTGTTCAGAAGGTTTGCTTGAGTTGGCGCAAAATATGCAAGGACAGTCTTATGTGGCACACAATTGACATGCGCAATGATGGTTATTCTGGAGTTTTTTTCTCCCTAAAGATGGAGAAGATATGCCGCCAGGCCATTGATCGTAGCTCTGGCAATCTGGTTGATATCAATGTGCAGAACTTTGGTAGCGATGAACTTCTCAAGTATATCACTAATAGTTCACCTGGAATCAAACGTCTCCGTTTGGAAAATTGCTATGTGACAAACAAGGGATTAATTGAAGCCGCTTCCAAACTTCAGCTGCTAGAGGACCTTGAAATTTCAAGATCACCAAGGTCATACTCGCGTCAAACTCTAGAAGTGATCGGGCGCTCTTGCCCTCTTTTAACAACATTCAAGTATAATGGCAGCTGGCAGAGATTTTACAAACGTAGGGCTACTAATGAAGATGCACTTGCCATAGCGGAAACAATACATGGTTTACGCCAAGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

236

Amino Acids

26.87

Weight (kDa)

9.05

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	49 - 95	2.8e-09	F-box-like
F-box	PF00646	49 - 91	7.6e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015111 RchiOBHm_Chr6g0277551
rosa_laevigata	RLG00000013293 RLG00000032172
rosa_multiflora	Rmu_co8060368.1_g000001 Rmu_co8498617.1_g000001 Rmu_sc0001846.1_g000030 Rmu_sc0002209.1_g000005 Rmu_sc0002209.1_g000006 Rmu_sc0003910.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061410 Rroxscaffold_1G00061420 Rroxscaffold_7G00191220
rosa_rugosa	Rorug05G0024500 Rorug05G0024500 Rorug06G0109600 Rorug06G0109600
rosa_samantha	Rh5AG118800 Rh5BG116700 Rh5BG116800 Rh5CG127800 Rh5DG115700 Rh6AG220000 Rh6BG223900 Rh6CG226200 Rh6DG216800
rosa_wichuraiana	Rw6G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	287
AccII	CGCG	2 cut(s)	173, 559
AciI	CCGC	4 cut(s)	171, 340, 498, 677
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	21, 325
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	84, 494, 530, 537, 610
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	342, 436
AluBI	AGCT	4 cut(s)	154, 360, 514, 624
AluI	AGCT	4 cut(s)	154, 360, 514, 624
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	455
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	514, 621
ApoI	RAATTY	1 cut(s)	531
AseI	ATTAAT	1 cut(s)	488
AspLEI	GCGC	3 cut(s)	243, 288, 585
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	426, 534
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	501, 633
BccI	CCATC	2 cut(s)	287, 319
BciT130I	CCWGG	2 cut(s)	344, 438
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	4 cut(s)	135, 191, 518, 569
BfoI	RGCGCY	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	4 cut(s)	340, 498, 515, 622
BlsI	GCNGC	4 cut(s)	341, 499, 516, 623
Bme1390I	CCNGG	2 cut(s)	344, 438
Bme18I	GGWCC	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	344, 438
BmsI	GCATC	1 cut(s)	652
BpmI	CTGGAG	2 cut(s)	39, 324
BpuEI	CTTGAG	2 cut(s)	253, 398
BsaJI	CCNNGG	2 cut(s)	545, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 325
Bse1I	ACTGG	2 cut(s)	22, 149
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	344, 438
BseDI	CCNNGG	2 cut(s)	545, 700
BseLI	CCNNNNNNNGG	2 cut(s)	21, 325
BseMI	GCAATG	1 cut(s)	295
BseNI	ACTGG	2 cut(s)	22, 149
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	501, 633
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	173, 559
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	21, 325
BsmAI	GTCTC	1 cut(s)	455
BsmBI	CGTCTC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	79, 156
Bsp143I	GATC	4 cut(s)	204, 352, 539, 576
BspACI	CCGC	4 cut(s)	171, 340, 498, 677
BspANI	GGCC	1 cut(s)	347
BspFNI	CGCG	2 cut(s)	173, 559
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	22, 149
BssECI	CCNNGG	2 cut(s)	545, 700
BssMI	GATC	4 cut(s)	204, 352, 539, 576
BssT1I	CCWWGG	2 cut(s)	545, 700
Bst2UI	CCWGG	2 cut(s)	344, 438
Bst4CI	ACNGT	2 cut(s)	217, 260
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	626
BstFNI	CGCG	2 cut(s)	173, 559
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	3 cut(s)	243, 288, 585
BstKTI	GATC	4 cut(s)	207, 355, 542, 579
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	204, 352, 539, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstNI	CCWGG	2 cut(s)	344, 438
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	342, 436
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	2 cut(s)	173, 559
BstV1I	GCAGC	2 cut(s)	501, 633
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	347
BtgZI	GCGATG	1 cut(s)	417
BtrI	CACGTC	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	626
CfoI	GCGC	3 cut(s)	243, 288, 585
Cfr13I	GGNCC	1 cut(s)	523
CseI	GACGC	1 cut(s)	548
CviAII	CATG	2 cut(s)	283, 689
CviJI	RGCY	9 cut(s)	123, 138, 154, 347, 360, 497, 514, 624, 650
CviKI_1	RGCY	9 cut(s)	123, 138, 154, 347, 360, 497, 514, 624, 650
DpnI	GATC	4 cut(s)	206, 354, 541, 578
DpnII	GATC	4 cut(s)	204, 352, 539, 576
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	545, 700
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	342, 436
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	545, 700
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	545, 700
Esp3I	CGTCTC	1 cut(s)	455
FaeI	CATG	2 cut(s)	286, 692
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 651, 683
FatI	CATG	2 cut(s)	282, 688
Fnu4HI	GCNGC	4 cut(s)	340, 498, 515, 622
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	340, 498, 515, 622
FspBI	CTAG	4 cut(s)	135, 191, 518, 569
FspI	TGCGCA	1 cut(s)	287
GlaI	GCGC	3 cut(s)	242, 287, 584
GluI	GCNGC	4 cut(s)	340, 498, 515, 622
GsuI	CTGGAG	2 cut(s)	39, 324
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	3 cut(s)	243, 288, 585
Hin1II	CATG	2 cut(s)	286, 692
Hin6I	GCGC	3 cut(s)	241, 286, 583
HinP1I	GCGC	3 cut(s)	241, 286, 583
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	2 cut(s)	61, 441
HphI	GGTGA	2 cut(s)	426, 534
Hpy166II	GTNNAC	3 cut(s)	132, 434, 695
Hpy188I	TCNGA	2 cut(s)	60, 222
Hpy188III	TCNNGA	4 cut(s)	202, 303, 537, 569
Hpy8I	GTNNAC	3 cut(s)	132, 434, 695
HpyAV	CCTTC	2 cut(s)	65, 217
HpyCH4III	ACNGT	2 cut(s)	217, 260
HpyCH4IV	ACGT	3 cut(s)	187, 448, 643
HpyCH4V	TGCA	3 cut(s)	252, 388, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpySE526I	ACGT	3 cut(s)	187, 448, 643
Hsp92II	CATG	2 cut(s)	286, 692
HspAI	GCGC	3 cut(s)	241, 286, 583
Kzo9I	GATC	4 cut(s)	204, 352, 539, 576
LmnI	GCTCC	2 cut(s)	151, 159
Lsp1109I	GCAGC	2 cut(s)	501, 633
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	4 cut(s)	135, 191, 518, 569
MaeII	ACGT	3 cut(s)	187, 448, 643
MaeIII	GTNAC	4 cut(s)	50, 166, 183, 472
MalI	GATC	4 cut(s)	206, 354, 541, 578
MboI	GATC	4 cut(s)	204, 352, 539, 576
MboII	GAAGA	2 cut(s)	343, 671
MfeI	CAATTG	2 cut(s)	84, 276
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	79, 156
MluCI	AATT	5 cut(s)	84, 276, 463, 489, 531
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	14, 514, 603
MseI	TTAA	3 cut(s)	209, 488, 599
MspA1I	CMGCKG	2 cut(s)	514, 624
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	344, 438
MunI	CAATTG	2 cut(s)	84, 276
MvaI	CCWGG	2 cut(s)	344, 438
MvnI	CGCG	2 cut(s)	173, 559
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	4 cut(s)	204, 352, 539, 576
NlaIII	CATG	2 cut(s)	286, 692
NmuCI	GTSAC	3 cut(s)	50, 183, 472
NsbI	TGCGCA	1 cut(s)	287
NspI	RCATGY	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	341, 499, 516, 623
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	342, 436
PspGI	CCWGG	2 cut(s)	342, 436
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	2 cut(s)	514, 624
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	209, 488, 599
SatI	GCNGC	4 cut(s)	340, 498, 515, 622
Sau3AI	GATC	4 cut(s)	204, 352, 539, 576
Sau96I	GGNCC	1 cut(s)	523
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	344, 438
SduI	GDGCHC	2 cut(s)	79, 156
SfaNI	GCATC	1 cut(s)	652
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	3 cut(s)	208, 232, 413
SmoI	CTYRAG	3 cut(s)	208, 232, 413
Sse9I	AATT	5 cut(s)	84, 276, 463, 489, 531
SsiI	CCGC	4 cut(s)	171, 340, 498, 677
SspMI	CTAG	4 cut(s)	135, 191, 518, 569
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	342, 436
StyI	CCWWGG	2 cut(s)	545, 700
TaaI	ACNGT	2 cut(s)	217, 260
TaiI	ACGT	3 cut(s)	190, 451, 646
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	84, 276, 463, 489, 531
TauI	GCSGC	2 cut(s)	342, 500
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	209, 488, 599
Tru9I	TTAA	3 cut(s)	209, 488, 599
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	3 cut(s)	50, 183, 472
TseI	GCWGC	2 cut(s)	514, 621
Tsp45I	GTSAC	3 cut(s)	50, 183, 472
TspDTI	ATGAA	2 cut(s)	420, 672
TspGWI	ACGGA	2 cut(s)	164, 443
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	523
VspI	ATTAAT	1 cut(s)	488
XapI	RAATTY	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	4 cut(s)	135, 191, 518, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.