Rh5BG116800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006429
Physical Location & Seq
Forward (+)
10985979 .. 10986612
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG116800.1

Sequence Viewer

Length: 540 bp
ATGTTGGCAATCGATGAGCTTCTCAAGTATATCACTAATAGTTCACCTGGAATCAAACGTCTCCGTTTGACAAACAAGGGATTAATTGAAGCTGCTTCCAAACCTCAGCTGCTAGAGGACCTTGAAATTTCAAGATCACCAAGGTCATACTCGCGTCAAACTCTAGAAGTGATTGGGCGCTCTTGCCCTCTTTTAACAACATTCAAGTATAATGGCAGCTGGCAGAGATTTTACAAACATAGGGGTACTAATGAAGATGCACTTGCCATAGCGGAAACAATGCATGGTTTACGCCAATTACAGCTTTTTGGGAATGCAGTGACTAATGATGGCTTGGCGAAGATTCTTGATTGTTGCCCTCACCTTGAGTCACTTGATCTGCGGGATTGTTTCAATCTTAATCTGGGAGGAGATTTGGAAATAAGATGTTCTAAACAAATTAAAAGACTGCAGCTTCCAGAGGATTGTCCTGATGATGATTCTGAATCAACCGAGTCTTTTGGAGCATATGAATTTCGATGCTTTACTATGTACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

179

Amino Acids

20.36

Weight (kDa)

5.67

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 38 - 131 2.6e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 272, 382
AcsI RAATTY 2 cut(s) 126, 512
AfaI GTAC 2 cut(s) 247, 533
AgsI TTSAA 5 cut(s) 89, 125, 132, 205, 394
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 19, 92, 109, 219, 304, 454
AluI AGCT 6 cut(s) 19, 92, 109, 219, 304, 454
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 92, 109, 216, 451
ApoI RAATTY 2 cut(s) 126, 512
AseI ATTAAT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 3 cut(s) 36, 129, 353
AvaII GGWCC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 79, 96, 228, 463
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 2 cut(s) 113, 164
BfmI CTRYAG 1 cut(s) 449
BfoI RGCGCY 1 cut(s) 181
BisI GCNGC 4 cut(s) 93, 110, 217, 452
BlsI GCNGC 4 cut(s) 94, 111, 218, 453
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 2 cut(s) 247, 509
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 8, 386
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 4 cut(s) 79, 96, 228, 463
Bsh1236I CGCG 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 2 cut(s) 134, 376
BspACI CCGC 2 cut(s) 272, 382
BspCNI CTCAG 1 cut(s) 118
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 531
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 134, 376
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 137, 379
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 134, 376
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 79, 96, 228, 463
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 12
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 246, 532
CviAII CATG 1 cut(s) 284
CviJI RGCY 7 cut(s) 19, 92, 109, 219, 304, 333, 454
CviKI_1 RGCY 7 cut(s) 19, 92, 109, 219, 304, 333, 454
CviQI GTAC 2 cut(s) 246, 532
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 136, 378
DpnII GATC 2 cut(s) 134, 376
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 287
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 283
FauI CCCGC 1 cut(s) 375
FauNDI CATATG 1 cut(s) 508
Fnu4HI GCNGC 4 cut(s) 93, 110, 217, 452
Fsp4HI GCNGC 4 cut(s) 93, 110, 217, 452
FspBI CTAG 2 cut(s) 113, 164
GlaI GCGC 1 cut(s) 179
GluI GCNGC 4 cut(s) 93, 110, 217, 452
HaeII RGCGCY 1 cut(s) 181
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 6 cut(s) 51, 343, 368, 479, 485, 494
HphI GGTGA 3 cut(s) 36, 129, 353
Hpy166II GTNNAC 2 cut(s) 44, 290
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 5 cut(s) 132, 164, 347, 458, 470
Hpy8I GTNNAC 2 cut(s) 44, 290
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 260, 283, 317, 451
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 134, 376
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 6 cut(s) 33, 60, 205, 389, 471, 483
Lsp1109I GCAGC 4 cut(s) 79, 96, 228, 463
LweI GCATC 2 cut(s) 247, 509
MaeI CTAG 2 cut(s) 113, 164
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 319, 369
MalI GATC 2 cut(s) 136, 378
MboI GATC 2 cut(s) 134, 376
MboII GAAGA 2 cut(s) 266, 352
MluCI AATT 5 cut(s) 84, 126, 296, 438, 512
MlyI GAGTC 2 cut(s) 377, 503
MnlI CCTC 6 cut(s) 109, 114, 198, 369, 401, 454
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 4 cut(s) 83, 194, 399, 441
MspA1I CMGCKG 2 cut(s) 109, 219
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 154
NdeI CATATG 1 cut(s) 508
NdeII GATC 2 cut(s) 134, 376
NlaIII CATG 1 cut(s) 287
NmuCI GTSAC 2 cut(s) 319, 369
NsiI ATGCAT 1 cut(s) 285
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 4 cut(s) 51, 343, 479, 485
PkrI GCNGC 4 cut(s) 94, 111, 218, 453
PleI GAGTC 2 cut(s) 376, 502
PpsI GAGTC 2 cut(s) 376, 502
PpuMI RGGWCCY 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
PstI CTGCAG 1 cut(s) 453
PvuII CAGCTG 2 cut(s) 109, 219
RsaI GTAC 2 cut(s) 247, 533
RsaNI GTAC 2 cut(s) 246, 532
SaqAI TTAA 4 cut(s) 83, 194, 399, 441
SatI GCNGC 4 cut(s) 93, 110, 217, 452
Sau3AI GATC 2 cut(s) 134, 376
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 377, 503
ScrFI CCNGG 1 cut(s) 48
SfaNI GCATC 2 cut(s) 247, 509
SfcI CTRYAG 1 cut(s) 449
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 23, 365
SmoI CTYRAG 2 cut(s) 23, 365
Sse9I AATT 5 cut(s) 84, 126, 296, 438, 512
SsiI CCGC 2 cut(s) 272, 382
SspMI CTAG 2 cut(s) 113, 164
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 140
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 12, 517
TasI AATT 5 cut(s) 84, 126, 296, 438, 512
TatI WGTACW 1 cut(s) 531
TfiI GAWTC 4 cut(s) 51, 343, 479, 485
Tru1I TTAA 4 cut(s) 83, 194, 399, 441
Tru9I TTAA 4 cut(s) 83, 194, 399, 441
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 319, 369
TseI GCWGC 4 cut(s) 92, 109, 216, 451
Tsp45I GTSAC 2 cut(s) 319, 369
TspDTI ATGAA 2 cut(s) 267, 525
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 118
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 2 cut(s) 126, 512
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 2 cut(s) 113, 164
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.