Rw6G019260

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006429
Physical Location & Seq
Forward (+)
38489696 .. 38490172
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019260.1

Sequence Viewer

Length: 477 bp
ATGTCTAACATTGATTTAAAACTTTTCAATAGTTCACCTGGAATCAGACGTCTTCGTTTGGATAGTTGCCCAGTAACTGACAAGGGATTAAGTAAAGTAGCTTCCAAACTTCCGCTGCTGGAGGACCTTGAAATTTCACACACAAACTCTTGCTCACGCGAGTCTCTTGAAGCAATAGGGCGCTCTTGCCCTCTCTTAACATCAATGAAGTATAAGGACGGATGGCAGGTATGGTTCAAATTTGATGATACTAATGAACAAGCACTTGCCATAGCCGGAACAATGCATGGTTTACGCTACCTCCAGCTTTTAGGGAATGCGGTGACTAATGATGGATTGGCCAAGATCCTTGATTCTTGTCCTCATCTCGAGTCACTTGATCTGAGATATTGTTTCAATCTTAATTTGGGAGGAGATTTGCAGAGAAGATGTTCTACACAAGTTAAAACACATCAACTTCCCGGAGGATCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

7.62

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 217
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 113, 320
AclWI GGATC 2 cut(s) 340, 475
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 132, 239
AcyI GRCGYC 1 cut(s) 49
AgsI TTSAA 5 cut(s) 28, 131, 170, 238, 397
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 101, 307
AluI AGCT 2 cut(s) 101, 307
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 340, 475
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 132, 239
Asp700I GAANNNNTTC 1 cut(s) 430
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 27, 334
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 124
BalI TGGCCA 1 cut(s) 341
BarI GAAGNNNNNNTAC 4 cut(s) 85, 117, 418, 450
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 216, 326
BciT130I CCWGG 1 cut(s) 39
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 39, 462
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 39, 462
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 2 cut(s) 140, 287
BpuMI CCSGG 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 276, 462
BsmAI GTCTC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 3 cut(s) 345, 379, 467
BspACI CCGC 2 cut(s) 113, 320
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 375
BspFNI CGCG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 2 cut(s) 340, 475
BsrI ACTGG 1 cut(s) 71
BssMI GATC 3 cut(s) 345, 379, 467
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 3 cut(s) 348, 382, 470
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 345, 379, 467
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 37, 460
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 227
BveI ACCTGC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 124
CviAII CATG 1 cut(s) 287
CviJI RGCY 4 cut(s) 101, 275, 307, 341
CviKI_1 RGCY 4 cut(s) 101, 275, 307, 341
DdeI CTNAG 1 cut(s) 383
DpnI GATC 3 cut(s) 347, 381, 469
DpnII GATC 3 cut(s) 345, 379, 467
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 288
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 213, 232, 272, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 116
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 2 cut(s) 140, 287
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 1 cut(s) 341
HapII CCGG 2 cut(s) 276, 462
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 4 cut(s) 42, 161, 353, 371
HpaII CCGG 2 cut(s) 276, 462
HphI GGTGA 2 cut(s) 27, 334
Hpy166II GTNNAC 2 cut(s) 35, 293
Hpy188I TCNGA 2 cut(s) 47, 384
Hpy188III TCNNGA 2 cut(s) 167, 368
Hpy8I GTNNAC 2 cut(s) 35, 293
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 286, 421
HpyF3I CTNAG 1 cut(s) 383
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 345, 379, 467
LpnPI CCDG 7 cut(s) 24, 51, 84, 104, 212, 289, 317
Lsp1109I GCAGC 1 cut(s) 102
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 3 cut(s) 73, 322, 372
MalI GATC 3 cut(s) 347, 381, 469
MboI GATC 3 cut(s) 345, 379, 467
MboII GAAGA 2 cut(s) 44, 438
MflI RGATCY 1 cut(s) 345
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 3 cut(s) 132, 239, 403
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 2 cut(s) 170, 380
MnlI CCTC 6 cut(s) 115, 201, 311, 372, 404, 458
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 430
MscI TGGCCA 1 cut(s) 341
MseI TTAA 5 cut(s) 17, 89, 197, 402, 444
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 2 cut(s) 276, 462
MspR9I CCNGG 2 cut(s) 39, 462
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 159
NciI CCSGG 1 cut(s) 462
NdeII GATC 3 cut(s) 345, 379, 467
NlaIII CATG 1 cut(s) 290
NmuCI GTSAC 2 cut(s) 322, 372
NsiI ATGCAT 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 368
PctI GAATGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 42, 353
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 2 cut(s) 169, 379
PpsI GAGTC 2 cut(s) 169, 379
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 124
PspPPI RGGWCCY 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 345
SaqAI TTAA 5 cut(s) 17, 89, 197, 402, 444
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 3 cut(s) 345, 379, 467
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 2 cut(s) 170, 380
ScrFI CCNGG 2 cut(s) 39, 462
SetI ASST 7 cut(s) 40, 52, 103, 129, 231, 303, 309
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 132, 239, 403
SsiI CCGC 2 cut(s) 113, 320
StyD4I CCNGG 2 cut(s) 37, 460
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 369
TasI AATT 3 cut(s) 132, 239, 403
TfiI GAWTC 2 cut(s) 42, 353
Tru1I TTAA 5 cut(s) 17, 89, 197, 402, 444
Tru9I TTAA 5 cut(s) 17, 89, 197, 402, 444
TseFI GTSAC 2 cut(s) 322, 372
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 2 cut(s) 322, 372
TspDTI ATGAA 2 cut(s) 221, 270
TspGWI ACGGA 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 2 cut(s) 132, 239
XhoI CTCGAG 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 430
ZraI GACGTC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.