Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006429

Physical Location & Seq

Genomic Coordinates Reverse (-)

83565238 .. 83567174

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGCGCATCAAAATCAACAGAAAGATGAAGAATTCCAGAACTACTTTGAGAATTTTGGTAAAATTACAGACTGGGTTGTAATGTATGATAGGGAAAACAACATGCCTAGGGGATTTGGATTCGTCACTTTTGATTCAGAGGAGGCTGTGGAGGATGTGTTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0008283 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

55

Amino Acids

6.65

Weight (kDa)

4.3

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 54	1.4e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006429)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015111 RchiOBHm_Chr6g0277551
rosa_laevigata	RLG00000013293 RLG00000032172
rosa_multiflora	Rmu_co8060368.1_g000001 Rmu_co8498617.1_g000001 Rmu_sc0001846.1_g000030 Rmu_sc0002209.1_g000005 Rmu_sc0002209.1_g000006 Rmu_sc0003910.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061410 Rroxscaffold_1G00061420 Rroxscaffold_7G00191220
rosa_rugosa	Rorug05G0024500 Rorug05G0024500 Rorug06G0109600 Rorug06G0109600
rosa_samantha	Rh5AG118800 Rh5BG116700 Rh5BG116800 Rh5CG127800 Rh5DG115700 Rh6AG220000 Rh6BG223900 Rh6CG226200 Rh6DG216800
rosa_wichuraiana	Rw6G019260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	32, 52
ApoI	RAATTY	2 cut(s)	32, 52
AspA2I	CCTAGG	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	7, 165
AvrII	CCTAGG	1 cut(s)	107
BfaI	CTAG	2 cut(s)	108, 166
BlnI	CCTAGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	7, 165
BstNSI	RCATGY	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	2 cut(s)	7, 165
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	87, 104
FatI	CATG	1 cut(s)	102
FspBI	CTAG	2 cut(s)	108, 166
GlaI	GCGC	2 cut(s)	6, 164
HhaI	GCGC	2 cut(s)	7, 165
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	2 cut(s)	5, 163
HinP1I	GCGC	2 cut(s)	5, 163
HinfI	GANTC	2 cut(s)	120, 134
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	2 cut(s)	5, 163
LpnPI	CCDG	2 cut(s)	50, 58
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	108, 166
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	41
MluCI	AATT	3 cut(s)	32, 52, 63
MnlI	CCTC	3 cut(s)	133, 136, 145
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	120, 134
SfaNI	GCATC	1 cut(s)	16
SgeI	CNNG	4 cut(s)	49, 85, 115, 120
Sse9I	AATT	3 cut(s)	32, 52, 63
SspMI	CTAG	2 cut(s)	108, 166
StyI	CCWWGG	1 cut(s)	107
TasI	AATT	3 cut(s)	32, 52, 63
TfiI	GAWTC	2 cut(s)	120, 134
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	42
XapI	RAATTY	2 cut(s)	32, 52
XceI	RCATGY	1 cut(s)	106
XmaJI	CCTAGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	108, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.