Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013196

Physical Location & Seq

Genomic Coordinates Forward (+)

1532077 .. 1534827

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCTAGATCATTGGTGCAGCCCGTAGGGCAGAAGAGGCTAACGAACGTGGCGGTGGTGCGTCTGAAAAAGCGCGGCACTCGCTTCGAAATCGCTTGTTACAAGAACAAGGTCCTCTCATGGCGGTCTGGCGTAGAGAAAGATTTGGATGAAGTGCTACAATCACATACCGTTTACACAAATGTCTCGAAAGGTATTCTTGCCAAGACAAAAGATTTGAACGCTGCATTTGATTCAGATGATCAGACCAAGATTTGTTTGGAGATTTTGGACAAAGGAGAGCTTCAAGTGGCTGGGAAGGAGAGGGAATCTCAGTTGTCCAGTCAGTTTCGAGACATTGCCACCATTGTTATGCAGAAAACCTATAATCCCGAAACTCGACGCCCTTACACTATTAGCTTGATTGAGAGTCTAATGCATGAAATTCACTTTGCTGTAGATCCACATCGAGGTTCAAAGAAGCAGGCTCTGGAAGTTATTCATGAGCTTCAGAAGCACTTCCCGATAAAACGGTCTCCAATGAGATTGCGACTCATAGTACCTGAACAAGAATTTTCATCCCTTTCTGAGAAGCTGACTGCCTGGAATGCTACAATAGTTTCGAAAGATCAAACTGGAAGTCAGATATCTATTATTTGTGAATTGGATCCTGGTTTTTATCGTGACTGCGAGGGATTGATGATGAAGTTGCATGGGAGATATGAAGTTCTTGCACTCTCTGTGCATGCTGAGGGTGACACTGTTATTGATCAATACGATGATCATGAGGATGAACCATCGCGCTCGCTCAATGAGTCCTCTGATTTTGACTTATCAAAGAAAAAAGAATCTACTGATTCTGACTTATTGAAAAAGGAGTTGGCTGATCCTATGCTAAAACTGAGCAATGAAATGCAAAAACAGAGCATTTCTACGGGGAAAGGAACTGTTGCATCGGAGGGAAAGCAGAACAAATGCAACACATGCAATGCGTTTGTGGGTGATTCCAAGCAGTACAGGGATCATTTCAAGAGTGAGTGGCACAAGCATAACTTGAAGCGCAAAACCAGACAACTTCCTTCCCTTACTGAAGTTGAGTGTGCGGCTGACATGGAAATGGATGACCATAAGGCGGATTTGAAGGATTATTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

379

Amino Acids

43.14

Weight (kDa)

6.69

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43860 AT1G43860
fragaria_vesca	FvH4_2g15010
malus_domestica	MD05G1011400.v1.1 MD05G1011500.v1.1
prunus_persica	Prupe.8G016400_v2.0.a1
pyrus_communis	pycom05g00670
rosa_chinensis	RchiOBHm_Chr6g0277561
rosa_laevigata	RLG00000013292
rosa_multiflora	Rmu_sc0001846.1_g000029 Rmu_sc0003910.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191210
rosa_rugosa	Rorug06G0109600
rosa_samantha	Rh6AG220100 Rh6BG224000 Rh6CG226300 Rh6DG216900
rosa_wichuraiana	Rw6G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	75, 781
AciI	CCGC	5 cut(s)	53, 75, 124, 1082, 1112
AclWI	GGATC	5 cut(s)	434, 641, 654, 860, 1008
AcsI	RAATTY	2 cut(s)	423, 551
AcuI	CTGAAG	2 cut(s)	473, 1089
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	540, 995
AfiI	CCNNNNNNNGG	2 cut(s)	449, 1111
AgsI	TTSAA	7 cut(s)	220, 287, 456, 850, 1009, 1036, 1120
AjnI	CCWGG	2 cut(s)	581, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	4 cut(s)	283, 399, 487, 574
AluI	AGCT	4 cut(s)	283, 399, 487, 574
Alw26I	GTCTC	3 cut(s)	190, 327, 519
AlwI	GGATC	5 cut(s)	434, 641, 654, 860, 1008
AlwNI	CAGNNNCTG	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	19, 224
ApoI	RAATTY	2 cut(s)	423, 551
ArsI	GACNNNNNNTTYG	4 cut(s)	199, 231, 604, 636
Asp700I	GAANNNNTTC	2 cut(s)	477, 497
AspLEI	GCGC	3 cut(s)	75, 783, 1041
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	746, 992
AsuII	TTCGAA	2 cut(s)	87, 602
AvaII	GGWCC	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	646
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	2 cut(s)	31, 211
BccI	CCATC	1 cut(s)	784
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	2 cut(s)	583, 651
BclI	TGATCA	3 cut(s)	241, 748, 760
BcoDI	GTCTC	3 cut(s)	190, 327, 519
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	20, 76, 225, 1083
BlsI	GCNGC	4 cut(s)	21, 77, 226, 1084
Bme1390I	CCNGG	2 cut(s)	583, 651
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	2 cut(s)	583, 651
BmsI	GCATC	1 cut(s)	941
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	2 cut(s)	87, 602
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	519
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 1111
Bse1I	ACTGG	2 cut(s)	321, 619
Bse3DI	GCAATG	3 cut(s)	336, 892, 973
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	583, 651
BseGI	GGATG	4 cut(s)	154, 557, 775, 1105
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	449, 1111
BseMI	GCAATG	3 cut(s)	336, 892, 973
BseMII	CTCAG	4 cut(s)	326, 558, 720, 872
BseNI	ACTGG	2 cut(s)	321, 619
BseXI	GCAGC	2 cut(s)	31, 211
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	75, 781
BslI	CCNNNNNNNGG	2 cut(s)	449, 1111
BsmAI	GTCTC	3 cut(s)	190, 327, 519
BsmI	GAATGC	1 cut(s)	592
Bso31I	GGTCTC	1 cut(s)	519
Bsp119I	TTCGAA	2 cut(s)	87, 602
Bsp143I	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
BspACI	CCGC	5 cut(s)	53, 75, 124, 1082, 1112
BspCNI	CTCAG	4 cut(s)	325, 559, 721, 873
BspFNI	CGCG	2 cut(s)	75, 781
BspHI	TCATGA	2 cut(s)	481, 763
BspLI	GGNNCC	1 cut(s)	648
BspPI	GGATC	5 cut(s)	434, 641, 654, 860, 1008
BspT104I	TTCGAA	2 cut(s)	87, 602
BspTNI	GGTCTC	1 cut(s)	519
BsrDI	GCAATG	3 cut(s)	336, 892, 973
BsrI	ACTGG	2 cut(s)	321, 619
BssMI	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	583, 651
Bst4CI	ACNGT	4 cut(s)	172, 513, 742, 928
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	963
BstBI	TTCGAA	2 cut(s)	87, 602
BstC8I	GCNNGC	3 cut(s)	465, 726, 785
BstDEI	CTNAG	4 cut(s)	312, 567, 729, 881
BstF5I	GGATG	4 cut(s)	154, 557, 775, 1105
BstFNI	CGCG	2 cut(s)	75, 781
BstHHI	GCGC	3 cut(s)	75, 783, 1041
BstKTI	GATC	9 cut(s)	11, 244, 442, 610, 649, 751, 763, 868, 1003
BstMAI	GTCTC	3 cut(s)	190, 327, 519
BstMBI	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 37, 81, 493, 587, 963
BstNI	CCWGG	2 cut(s)	583, 651
BstNSI	RCATGY	2 cut(s)	728, 966
BstSCI	CCNGG	2 cut(s)	581, 649
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	2 cut(s)	75, 781
BstV1I	GCAGC	2 cut(s)	31, 211
BstX2I	RGATCY	2 cut(s)	439, 646
BstYI	RGATCY	2 cut(s)	439, 646
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	4 cut(s)	154, 557, 775, 1105
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	3 cut(s)	465, 726, 785
CaiI	CAGNNNCTG	1 cut(s)	469
CciI	TCATGA	2 cut(s)	481, 763
CfoI	GCGC	3 cut(s)	75, 783, 1041
Cfr13I	GGNCC	1 cut(s)	112
CseI	GACGC	2 cut(s)	50, 390
Csp6I	GTAC	2 cut(s)	539, 994
CviAII	CATG	8 cut(s)	120, 419, 482, 692, 725, 764, 963, 1090
CviQI	GTAC	2 cut(s)	539, 994
DdeI	CTNAG	4 cut(s)	312, 567, 729, 881
DpnI	GATC	9 cut(s)	10, 243, 441, 609, 648, 750, 762, 867, 1002
DpnII	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	1127
Eco31I	GGTCTC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	473, 1089
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	581, 649
EcoRV	GATATC	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	420
FaeI	CATG	8 cut(s)	123, 422, 485, 695, 728, 767, 966, 1093
FalI	AAGNNNNNCTT	6 cut(s)	183, 215, 267, 299, 1016, 1048
FatI	CATG	8 cut(s)	119, 418, 481, 691, 724, 763, 962, 1089
FbaI	TGATCA	3 cut(s)	241, 748, 760
Fnu4HI	GCNGC	4 cut(s)	20, 76, 225, 1083
FokI	GGATG	4 cut(s)	161, 544, 782, 1112
Fsp4HI	GCNGC	4 cut(s)	20, 76, 225, 1083
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	74, 782, 1040
GluI	GCNGC	4 cut(s)	20, 76, 225, 1083
GsaI	CCCAGC	1 cut(s)	297
HgaI	GACGC	2 cut(s)	50, 390
HhaI	GCGC	3 cut(s)	75, 783, 1041
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	8 cut(s)	123, 422, 485, 695, 728, 767, 966, 1093
Hin6I	GCGC	3 cut(s)	73, 781, 1039
HinP1I	GCGC	3 cut(s)	73, 781, 1039
HinfI	GANTC	8 cut(s)	233, 308, 409, 531, 794, 827, 836, 983
HphI	GGTGA	2 cut(s)	746, 992
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	9 cut(s)	66, 238, 246, 492, 568, 624, 802, 841, 937
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	3 cut(s)	292, 1068, 1114
HpyCH4III	ACNGT	4 cut(s)	172, 513, 742, 928
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 37, 81, 493, 587, 963
HpyF3I	CTNAG	4 cut(s)	312, 567, 729, 881
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	8 cut(s)	123, 422, 485, 695, 728, 767, 966, 1093
HspAI	GCGC	3 cut(s)	73, 781, 1039
Ksp22I	TGATCA	3 cut(s)	241, 748, 760
Kzo9I	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
Lsp1109I	GCAGC	2 cut(s)	31, 211
LweI	GCATC	1 cut(s)	941
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	98, 662, 734
MalI	GATC	9 cut(s)	10, 243, 441, 609, 648, 750, 762, 867, 1002
MboI	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	2 cut(s)	439, 646
MluCI	AATT	3 cut(s)	423, 551, 641
MlyI	GAGTC	3 cut(s)	418, 525, 803
MnlI	CCTC	9 cut(s)	30, 125, 297, 443, 664, 724, 760, 808, 931
Mph1103I	ATGCAT	1 cut(s)	420
MroXI	GAANNNNTTC	2 cut(s)	477, 497
MseI	TTAA	1 cut(s)	1135
MslI	CAYNNNNRTG	3 cut(s)	350, 768, 1094
MspR9I	CCNGG	2 cut(s)	583, 651
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	583, 651
MvnI	CGCG	2 cut(s)	75, 781
MwoI	GCNNNNNNNGC	6 cut(s)	28, 37, 81, 493, 587, 963
NdeII	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
NlaIII	CATG	8 cut(s)	123, 422, 485, 695, 728, 767, 966, 1093
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	2 cut(s)	662, 734
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	2 cut(s)	728, 966
NspV	TTCGAA	2 cut(s)	87, 602
PaeI	GCATGC	1 cut(s)	728
PagI	TCATGA	2 cut(s)	481, 763
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	477, 497
PfeI	GAWTC	5 cut(s)	233, 308, 827, 836, 983
PkrI	GCNGC	4 cut(s)	21, 77, 226, 1084
PleI	GAGTC	3 cut(s)	417, 525, 802
PpsI	GAGTC	3 cut(s)	417, 525, 802
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	581, 649
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	581, 649
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	439, 646
RsaI	GTAC	2 cut(s)	540, 995
RsaNI	GTAC	2 cut(s)	539, 994
RseI	CAYNNNNRTG	3 cut(s)	350, 768, 1094
SaqAI	TTAA	1 cut(s)	1135
SatI	GCNGC	4 cut(s)	20, 76, 225, 1083
Sau3AI	GATC	9 cut(s)	8, 241, 439, 607, 646, 748, 760, 865, 1000
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	3 cut(s)	418, 525, 803
ScrFI	CCNGG	2 cut(s)	583, 651
SfaNI	GCATC	1 cut(s)	941
SfcI	CTRYAG	1 cut(s)	435
SfuI	TTCGAA	2 cut(s)	87, 602
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	3 cut(s)	350, 768, 1094
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	3 cut(s)	423, 551, 641
SsiI	CCGC	5 cut(s)	53, 75, 124, 1082, 1112
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	581, 649
TaaI	ACNGT	4 cut(s)	172, 513, 742, 928
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	6 cut(s)	87, 188, 331, 379, 448, 602
TasI	AATT	3 cut(s)	423, 551, 641
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	2 cut(s)	78, 1085
TfiI	GAWTC	5 cut(s)	233, 308, 827, 836, 983
Tru1I	TTAA	1 cut(s)	1135
Tru9I	TTAA	1 cut(s)	1135
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	2 cut(s)	662, 734
TseI	GCWGC	2 cut(s)	19, 224
Tsp45I	GTSAC	2 cut(s)	662, 734
TspDTI	ATGAA	8 cut(s)	165, 435, 470, 546, 698, 717, 786, 903
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	423, 551
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	2 cut(s)	728, 966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	477, 497
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.