Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003910.1

Orthogroup ID

OG0013196

Physical Location & Seq

Genomic Coordinates Forward (+)

368 .. 2672

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003910.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgatgaataagggagggtctcggttagtgtcgaaggtgcagcagccgattgggcagaagaggctgacgaacgtggcggtggtgcgtctcaagaagcgcggcaatcgcttcgaaattgcttgctacaagaacaaggtcctctcatggcgctccggcgtagagaaagatttggatgaggtgttgcagtcaaagacggtgtacttgaatgtttccaaaggtgttcttgccaagaccaaggatttggttgctgcgtttgggtcggatgatcagaccaagatttgtttagagatcttggataaaggggagcttcaggttgctgggaaggagagagagtctcagttgtccagtcaatttcgggatatcgccactattgttatgcagaaaacctataatccagagaaggcatcaagcagatcggtgttatcggcccttgaagtcattcatgagctgcaaaagcagttcccgatcaaacggtctcccatgaggttgcgactcacggttcctgaacaggaagtctcagcactcctggagaagcttacaacttggaatgcttccattgtttcaaaagatccatcaggaaatcagctatccattatctgtgaactggaccctggtttgtatagggactgtgagggtttgttgatgacactgcatggaaagtatgaagtccttgctctctctgtgcatgcagagggtgacacagttattgatcaacacgaagaatatgaggacgaactgccacgctcactcattgaatcggctgattctgaatcatcaaagaagaaagaaactagtccttcatctgatccagtaatgcaactgagtgagaaaatgcaaacacagagcatctctgctgggaatgtgaaggccacaggggaaggaaaacaaagcaaatgcagcacttgcaatgcattttttggtgattccaagcagttcagggatcacttcaagagtgagtggcacaagcataatttgaaacgcaagagcaagcaacttcctcctctcacagaagatgagtgtgcagctgacattgacatggatgactctaaggcggatttgaaggattattctttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

358

Amino Acids

40.12

Weight (kDa)

7.05

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43860 AT1G43860
fragaria_vesca	FvH4_2g15010
malus_domestica	MD05G1011400.v1.1 MD05G1011500.v1.1
prunus_persica	Prupe.8G016400_v2.0.a1
pyrus_communis	pycom05g00670
rosa_chinensis	RchiOBHm_Chr6g0277561
rosa_laevigata	RLG00000013292
rosa_multiflora	Rmu_sc0001846.1_g000029 Rmu_sc0003910.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191210
rosa_rugosa	Rorug06G0109600
rosa_samantha	Rh6AG220100 Rh6BG224000 Rh6CG226300 Rh6DG216900
rosa_wichuraiana	Rw6G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	77, 99, 1052
AclWI	GGATC	3 cut(s)	563, 800, 948
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	7 cut(s)	205, 434, 564, 755, 949, 976, 1060
AhlI	ACTAGT	1 cut(s)	791
AjnI	CCWGG	2 cut(s)	525, 610
AluBI	AGCT	5 cut(s)	307, 448, 535, 586, 1025
AluI	AGCT	5 cut(s)	307, 448, 535, 586, 1025
Alw26I	GTCTC	5 cut(s)	24, 92, 339, 480, 520
AlwI	GGATC	3 cut(s)	563, 800, 948
AoxI	GGCC	2 cut(s)	426, 867
ApeKI	GCWGC	6 cut(s)	40, 43, 248, 448, 897, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	99, 150
AspS9I	GGNCC	3 cut(s)	136, 427, 607
AsuHPI	GGTGA	2 cut(s)	707, 932
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	136, 607
BbvI	GCAGC	6 cut(s)	52, 55, 235, 435, 909, 1034
BccI	CCATC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	2 cut(s)	527, 612
BclI	TGATCA	2 cut(s)	265, 709
BcoDI	GTCTC	5 cut(s)	24, 92, 339, 480, 520
BcuI	ACTAGT	1 cut(s)	791
BfaI	CTAG	1 cut(s)	792
BfoI	RGCGCY	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	7 cut(s)	41, 44, 100, 249, 449, 898, 1023
BlsI	GCNGC	7 cut(s)	42, 45, 101, 250, 450, 899, 1024
Bme1390I	CCNGG	2 cut(s)	527, 612
Bme18I	GGWCC	2 cut(s)	136, 607
BmgT120I	GGNCC	3 cut(s)	136, 427, 607
BmiI	GGNNCC	2 cut(s)	501, 609
BmrFI	CCNGG	2 cut(s)	527, 612
BmsI	GCATC	2 cut(s)	413, 855
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	24, 480
BsaJI	CCNNGG	2 cut(s)	234, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	3 cut(s)	345, 609, 809
Bse3DI	GCAATG	1 cut(s)	913
BseBI	CCWGG	2 cut(s)	527, 612
BseDI	CCNNGG	2 cut(s)	234, 610
BseGI	GGATG	3 cut(s)	178, 268, 1045
BseMI	GCAATG	1 cut(s)	913
BseMII	CTCAG	3 cut(s)	350, 531, 812
BseNI	ACTGG	3 cut(s)	345, 609, 809
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	6 cut(s)	52, 55, 235, 435, 909, 1034
BseYI	CCCAGC	2 cut(s)	317, 854
BsgI	GTGCAG	2 cut(s)	59, 1041
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	428, 869
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	638
BsmAI	GTCTC	5 cut(s)	24, 92, 339, 480, 520
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	428, 869
Bso31I	GGTCTC	2 cut(s)	24, 480
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
BspACI	CCGC	3 cut(s)	77, 99, 1052
BspANI	GGCC	2 cut(s)	428, 869
BspCNI	CTCAG	3 cut(s)	349, 530, 813
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	501, 609
BspPI	GGATC	3 cut(s)	563, 800, 948
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	2 cut(s)	24, 480
BsrDI	GCAATG	1 cut(s)	913
BsrI	ACTGG	3 cut(s)	345, 609, 809
BssECI	CCNNGG	2 cut(s)	234, 610
BssMI	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	527, 612
Bst4CI	ACNGT	5 cut(s)	196, 474, 499, 629, 703
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	903
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	121, 687, 989
BstDEI	CTNAG	4 cut(s)	336, 517, 821, 1047
BstF5I	GGATG	3 cut(s)	178, 268, 1045
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	2 cut(s)	99, 150
BstKTI	GATC	8 cut(s)	268, 291, 416, 468, 571, 712, 808, 943
BstMAI	GTCTC	5 cut(s)	24, 92, 339, 480, 520
BstMBI	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 61, 105, 454, 897, 903
BstNI	CCWGG	2 cut(s)	527, 612
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	525, 610
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	6 cut(s)	52, 55, 235, 435, 909, 1034
BstX2I	RGATCY	2 cut(s)	288, 568
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	2 cut(s)	288, 568
BsuRI	GGCC	2 cut(s)	428, 869
BtsCI	GGATG	3 cut(s)	178, 268, 1045
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	121, 687, 989
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	99, 150
Cfr13I	GGNCC	3 cut(s)	136, 427, 607
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	144, 443, 481, 653, 686, 1036
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	4 cut(s)	336, 517, 821, 1047
DpnI	GATC	8 cut(s)	267, 290, 415, 467, 570, 711, 807, 942
DpnII	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	1067
Eco130I	CCWWGG	1 cut(s)	234
Eco31I	GGTCTC	2 cut(s)	24, 480
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	136, 607
Eco57I	CTGAAG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	525, 610
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	234
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	6 cut(s)	147, 446, 484, 656, 689, 1039
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 291, 323
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	6 cut(s)	143, 442, 480, 652, 685, 1035
FbaI	TGATCA	2 cut(s)	265, 709
Fnu4HI	GCNGC	7 cut(s)	41, 44, 100, 249, 449, 898, 1023
FokI	GGATG	3 cut(s)	185, 275, 1052
Fsp4HI	GCNGC	7 cut(s)	41, 44, 100, 249, 449, 898, 1023
FspBI	CTAG	1 cut(s)	792
GlaI	GCGC	2 cut(s)	98, 149
GluI	GCNGC	7 cut(s)	41, 44, 100, 249, 449, 898, 1023
GsaI	CCCAGC	2 cut(s)	321, 858
GsuI	CTGGAG	1 cut(s)	548
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	428, 869
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	99, 150
Hin1II	CATG	6 cut(s)	147, 446, 484, 656, 689, 1039
Hin6I	GCGC	2 cut(s)	97, 148
HinP1I	GCGC	2 cut(s)	97, 148
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	7 cut(s)	332, 492, 755, 764, 770, 923, 1043
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	707, 932
Hpy166II	GTNNAC	2 cut(s)	199, 602
Hpy188I	TCNGA	5 cut(s)	262, 270, 769, 805, 1076
Hpy188III	TCNNGA	8 cut(s)	91, 356, 395, 443, 463, 503, 576, 949
Hpy8I	GTNNAC	2 cut(s)	199, 602
HpyAV	CCTTC	7 cut(s)	28, 316, 394, 807, 859, 872, 1054
HpyCH4III	ACNGT	5 cut(s)	196, 474, 499, 629, 703
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 61, 105, 454, 897, 903
HpyF3I	CTNAG	4 cut(s)	336, 517, 821, 1047
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	6 cut(s)	147, 446, 484, 656, 689, 1039
HspAI	GCGC	2 cut(s)	97, 148
Ksp22I	TGATCA	2 cut(s)	265, 709
Kzo9I	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
LmnI	GCTCC	2 cut(s)	155, 304
Lsp1109I	GCAGC	6 cut(s)	52, 55, 235, 435, 909, 1034
LweI	GCATC	2 cut(s)	413, 855
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	8 cut(s)	267, 290, 415, 467, 570, 711, 807, 942
MboI	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
MboII	GAAGA	4 cut(s)	70, 731, 793, 1022
MflI	RGATCY	2 cut(s)	288, 568
MluCI	AATT	3 cut(s)	114, 350, 970
MlyI	GAGTC	3 cut(s)	341, 486, 1037
MmeI	TCCRAC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	527, 612
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	527, 612
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	52, 61, 105, 454, 897, 903
NdeII	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
NlaIII	CATG	6 cut(s)	147, 446, 484, 656, 689, 1039
NlaIV	GGNNCC	2 cut(s)	501, 609
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	913
NspI	RCATGY	1 cut(s)	689
NspV	TTCGAA	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	442
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	755, 764, 770, 923
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	7 cut(s)	42, 45, 101, 250, 450, 899, 1024
PleI	GAGTC	3 cut(s)	340, 486, 1037
PpsI	GAGTC	3 cut(s)	340, 486, 1037
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	525, 610
PspFI	CCCAGC	2 cut(s)	317, 854
PspGI	CCWGG	2 cut(s)	525, 610
PspN4I	GGNNCC	2 cut(s)	501, 609
PspPI	GGNCC	3 cut(s)	136, 427, 607
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	288, 568
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	1034
SatI	GCNGC	7 cut(s)	41, 44, 100, 249, 449, 898, 1023
Sau3AI	GATC	8 cut(s)	265, 288, 413, 465, 568, 709, 805, 940
Sau96I	GGNCC	3 cut(s)	136, 427, 607
SchI	GAGTC	3 cut(s)	341, 486, 1037
ScrFI	CCNGG	2 cut(s)	527, 612
SfaNI	GCATC	2 cut(s)	413, 855
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	136, 607
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SpeI	ACTAGT	1 cut(s)	791
SphI	GCATGC	1 cut(s)	689
Sse9I	AATT	3 cut(s)	114, 350, 970
SsiI	CCGC	3 cut(s)	77, 99, 1052
SspMI	CTAG	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	525, 610
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	5 cut(s)	196, 474, 499, 629, 703
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	32, 111
TasI	AATT	3 cut(s)	114, 350, 970
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	755, 764, 770, 923
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	6 cut(s)	40, 43, 248, 448, 897, 1022
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	4 cut(s)	20, 431, 678, 789
TspRI	CASTG	1 cut(s)	654
VpaK11BI	GGWCC	2 cut(s)	136, 607
XceI	RCATGY	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	1 cut(s)	792
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.