Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013196

Physical Location & Seq

Genomic Coordinates Reverse (-)

42364731 .. 42367427

Gene Structure 2697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGTTTTTGTTTGTGACAGAGAGAAAGATTTGGATGAGGTGTTGCAGTCAAAGACAGTGTACTTGAATGTTTCCAAAGGTGTTCTTGCCAAGACCAAGGATTTGGTAGCCGCGTTTGGGTCGGATGATCAGACCAAGATTTGTTTAGAGATCTTGGATAAAGGGGAACTTCAGGTTGCTGGGAAGGAGAGAGAGTCTCAGTTGTCCAGTCAATTTCGGGATATCGCCACTATTGTTATGCAGAAAACCTATAATCCAGAGACTCGGCGCCCTTACACTATCAGTTTGATTGAGAGGTTGATGCACGAAATTCATTTTGCTGTGGATCCACATAGTGGCTCAAAGAAGCAGGCCCTTGAAGTCATTCATGAGCTGCAAAAGCAGTTCCCGATCAAACGGTCTCCCATGAGGTTGCGACTCACGGTTCCTGAACAGGAAGTCTCAGCACTCCTGGAGAAGCTTACAACTTGGAATGCTTCCATTGTTTCAAAAGATCCATCAGGAAATCAGCTATCCATTATCTGTGAACTGGACCCTGGTTTGTATAGGGACTGTGAGGGTTTGTTGATGACACTGCATGGAAAGTATGAAGTCCTTGCTCTCTCTGTGCATGCAGAGGGTGACACAGTTATTGATCAACACGAAGAATATGAGGACGAACTGCCACGCTCACTCATTGAATCGGCTGATTCTGAATCATCAAAGAAGAAAGAAACTAGTCCTTCATCTGATCCAGTAATGCAACTGAGTGAGAAAATGCAAACACAGAGCATCTCTACTGGGAATGTGAAGGCCACAGGGGAAGGAAAACAAACCAAATGCAGCACTTGCAATGCATTTTTTGGTGATTCCAAGCAGTTCAGGGATCACTTCAAGAGTGAGTGGCACAAGCATAATTTGAAACGCAAGAGCAAGCAACTTCCTCCTCTCACAGAAGATGAGTGTGCAGCTGACATTGACATGGATGACTCTAGGGCGGATTTGAAGGATTATTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000922 GO:0001501 GO:0001503 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0008283 GO:0009605 GO:0009888 GO:0009987 GO:0010467 GO:0015630 GO:0015631 GO:0016043 GO:0016070 GO:0016072 GO:0016477 GO:0019843 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0030282 GO:0030595 GO:0031214 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0040011 GO:0042221 GO:0042254 GO:0042255 GO:0042256 GO:0042330 GO:0043021 GO:0043022 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048513 GO:0048534 GO:0048539 GO:0048731 GO:0048856 GO:0048870 GO:0050896 GO:0050900 GO:0051179 GO:0051674 GO:0051716 GO:0060326 GO:0060348 GO:0065003 GO:0070013 GO:0070887 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

SBDS SBDS_C

Protein Analysis

333

Amino Acids

37.64

Weight (kDa)

5.4

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBDS_N	PF01172	6 - 64	3.1e-15	Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
SBDS_domain_II	PF09377	73 - 133	9.4e-23	SBDS protein, domain II
SBDS_C	PF20268	136 - 198	1.4e-10	SBDS protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43860 AT1G43860
fragaria_vesca	FvH4_2g15010
malus_domestica	MD05G1011400.v1.1 MD05G1011500.v1.1
prunus_persica	Prupe.8G016400_v2.0.a1
pyrus_communis	pycom05g00670
rosa_chinensis	RchiOBHm_Chr6g0277561
rosa_laevigata	RLG00000013292
rosa_multiflora	Rmu_sc0001846.1_g000029 Rmu_sc0003910.1_g000001
rosa_roxburghii	Rroxscaffold_7G00191210
rosa_rugosa	Rorug06G0109600
rosa_samantha	Rh6AG220100 Rh6BG224000 Rh6CG226300 Rh6DG216900
rosa_wichuraiana	Rw6G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 977
AclWI	GGATC	5 cut(s)	320, 333, 488, 725, 873
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	117, 335
AgsI	TTSAA	7 cut(s)	67, 359, 489, 680, 874, 901, 985
AhlI	ACTAGT	1 cut(s)	716
AjnI	CCWGG	2 cut(s)	450, 535
AluBI	AGCT	4 cut(s)	373, 460, 511, 950
AluI	AGCT	4 cut(s)	373, 460, 511, 950
Alw26I	GTCTC	4 cut(s)	201, 254, 405, 445
AlwI	GGATC	5 cut(s)	320, 333, 488, 725, 873
AoxI	GGCC	2 cut(s)	351, 792
ApeKI	GCWGC	3 cut(s)	373, 822, 947
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	352, 532
AsuHPI	GGTGA	2 cut(s)	632, 857
AvaII	GGWCC	1 cut(s)	532
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	360, 834, 959
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	452, 537
BclI	TGATCA	2 cut(s)	127, 634
BcoDI	GTCTC	4 cut(s)	201, 254, 405, 445
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	2 cut(s)	717, 972
BfoI	RGCGCY	1 cut(s)	271
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	4 cut(s)	111, 374, 823, 948
BlsI	GCNGC	4 cut(s)	112, 375, 824, 949
Bme1390I	CCNGG	2 cut(s)	452, 537
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	352, 532
BmiI	GGNNCC	4 cut(s)	269, 327, 426, 534
BmrFI	CCNGG	2 cut(s)	452, 537
BmrI	ACTGGG	1 cut(s)	789
BmsI	GCATC	2 cut(s)	291, 780
BmuI	ACTGGG	1 cut(s)	789
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	96, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 335
Bse1I	ACTGG	4 cut(s)	207, 534, 734, 784
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	2 cut(s)	452, 537
BseDI	CCNNGG	2 cut(s)	96, 535
BseGI	GGATG	3 cut(s)	40, 130, 970
BseLI	CCNNNNNNNGG	2 cut(s)	117, 335
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	3 cut(s)	212, 456, 737
BseNI	ACTGG	4 cut(s)	207, 534, 734, 784
BseRI	GAGGAG	1 cut(s)	915
BseXI	GCAGC	3 cut(s)	360, 834, 959
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	353, 794
BshNI	GGYRCC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	117, 335
BsmAI	GTCTC	4 cut(s)	201, 254, 405, 445
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	353, 794
Bso31I	GGTCTC	1 cut(s)	405
Bsp143I	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
BspACI	CCGC	2 cut(s)	111, 977
BspANI	GGCC	2 cut(s)	353, 794
BspCNI	CTCAG	3 cut(s)	211, 455, 738
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	269, 327, 426, 534
BspPI	GGATC	5 cut(s)	320, 333, 488, 725, 873
BspT107I	GGYRCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	4 cut(s)	207, 534, 734, 784
BssECI	CCNNGG	2 cut(s)	96, 535
BssMI	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
BssNI	GRCGYC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	452, 537
Bst4CI	ACNGT	5 cut(s)	58, 399, 424, 554, 628
BstACI	GRCGYC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	828
BstC8I	GCNNGC	3 cut(s)	351, 612, 914
BstDEI	CTNAG	3 cut(s)	198, 442, 746
BstF5I	GGATG	3 cut(s)	40, 130, 970
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	8 cut(s)	130, 153, 328, 393, 496, 637, 733, 868
BstMAI	GTCTC	4 cut(s)	201, 254, 405, 445
BstMBI	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 828
BstNI	CCWGG	2 cut(s)	452, 537
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	450, 535
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	360, 834, 959
BstX2I	RGATCY	3 cut(s)	150, 325, 493
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	3 cut(s)	150, 325, 493
BsuRI	GGCC	2 cut(s)	353, 794
BtsCI	GGATG	3 cut(s)	40, 130, 970
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	2 cut(s)	63, 572
Cac8I	GCNNGC	3 cut(s)	351, 612, 914
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	352, 532
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	368, 406, 578, 611, 961
CviJI	RGCY	9 cut(s)	110, 339, 353, 373, 460, 511, 686, 794, 950
CviKI_1	RGCY	9 cut(s)	110, 339, 353, 373, 460, 511, 686, 794, 950
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	198, 442, 746
DinI	GGCGCC	1 cut(s)	269
DpnI	GATC	8 cut(s)	129, 152, 327, 392, 495, 636, 732, 867
DpnII	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
DraIII	CACNNNGTG	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	450, 535
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	838
EgeI	GGCGCC	1 cut(s)	269
EheI	GGCGCC	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	371, 409, 581, 614, 964
FalI	AAGNNNNNCTT	4 cut(s)	69, 101, 153, 185
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	5 cut(s)	367, 405, 577, 610, 960
FbaI	TGATCA	2 cut(s)	127, 634
Fnu4HI	GCNGC	4 cut(s)	111, 374, 823, 948
FokI	GGATG	3 cut(s)	47, 137, 977
Fsp4HI	GCNGC	4 cut(s)	111, 374, 823, 948
FspBI	CTAG	2 cut(s)	717, 972
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	4 cut(s)	111, 374, 823, 948
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	473
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	353, 794
HhaI	GCGC	1 cut(s)	270
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	5 cut(s)	371, 409, 581, 614, 964
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	8 cut(s)	194, 262, 417, 680, 689, 695, 848, 968
HphI	GGTGA	2 cut(s)	632, 857
Hpy166II	GTNNAC	2 cut(s)	61, 527
Hpy188I	TCNGA	5 cut(s)	124, 132, 694, 730, 1001
Hpy188III	TCNNGA	7 cut(s)	218, 257, 368, 388, 428, 501, 874
Hpy8I	GTNNAC	2 cut(s)	61, 527
HpyAV	CCTTC	5 cut(s)	178, 732, 784, 797, 979
HpyCH4III	ACNGT	5 cut(s)	58, 399, 424, 554, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 828
HpyF3I	CTNAG	3 cut(s)	198, 442, 746
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	371, 409, 581, 614, 964
HspAI	GCGC	1 cut(s)	268
KasI	GGCGCC	1 cut(s)	267
Ksp22I	TGATCA	2 cut(s)	127, 634
Kzo9I	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
Lsp1109I	GCAGC	3 cut(s)	360, 834, 959
LweI	GCATC	2 cut(s)	291, 780
MaeI	CTAG	2 cut(s)	717, 972
MaeIII	GTNAC	2 cut(s)	14, 620
MalI	GATC	8 cut(s)	129, 152, 327, 392, 495, 636, 732, 867
MboI	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
MboII	GAAGA	3 cut(s)	656, 718, 947
MflI	RGATCY	3 cut(s)	150, 325, 493
MluCI	AATT	3 cut(s)	212, 309, 895
Mly113I	GGCGCC	1 cut(s)	268
MlyI	GAGTC	4 cut(s)	203, 256, 411, 962
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	31, 288, 402, 550, 610, 646, 933, 936
Mph1103I	ATGCAT	1 cut(s)	838
MroXI	GAANNNNTTC	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	452, 537
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	452, 537
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	379, 828
NarI	GGCGCC	1 cut(s)	268
NdeII	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
NlaIII	CATG	5 cut(s)	371, 409, 581, 614, 964
NlaIV	GGNNCC	4 cut(s)	269, 327, 426, 534
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	14, 620
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	1 cut(s)	614
PaeI	GCATGC	1 cut(s)	614
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	680, 689, 695, 848
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	112, 375, 824, 949
PleI	GAGTC	4 cut(s)	202, 256, 411, 962
PluTI	GGCGCC	1 cut(s)	271
PpsI	GAGTC	4 cut(s)	202, 256, 411, 962
Psp6I	CCWGG	2 cut(s)	450, 535
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	450, 535
PspN4I	GGNNCC	4 cut(s)	269, 327, 426, 534
PspPI	GGNCC	2 cut(s)	352, 532
PsuI	RGATCY	3 cut(s)	150, 325, 493
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	959
SatI	GCNGC	4 cut(s)	111, 374, 823, 948
Sau3AI	GATC	8 cut(s)	127, 150, 325, 390, 493, 634, 730, 865
Sau96I	GGNCC	2 cut(s)	352, 532
SchI	GAGTC	4 cut(s)	203, 256, 411, 962
ScrFI	CCNGG	2 cut(s)	452, 537
SfaNI	GCATC	2 cut(s)	291, 780
SfoI	GGCGCC	1 cut(s)	269
SinI	GGWCC	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	959
SpeI	ACTAGT	1 cut(s)	716
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	3 cut(s)	212, 309, 895
SsiI	CCGC	2 cut(s)	111, 977
SspDI	GGCGCC	1 cut(s)	267
SspMI	CTAG	2 cut(s)	717, 972
StyD4I	CCNGG	2 cut(s)	450, 535
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	5 cut(s)	58, 399, 424, 554, 628
TasI	AATT	3 cut(s)	212, 309, 895
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	680, 689, 695, 848
TscAI	CASTG	2 cut(s)	63, 579
TseFI	GTSAC	2 cut(s)	14, 620
TseI	GCWGC	3 cut(s)	373, 822, 947
Tsp45I	GTSAC	2 cut(s)	14, 620
TspDTI	ATGAA	4 cut(s)	302, 356, 603, 714
TspRI	CASTG	2 cut(s)	63, 579
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	717, 972
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.