AT1G44780

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007419
Physical Location & Seq
Forward (+)
16909708 .. 16912270
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44780.2

Sequence Viewer

Length: 1392 bp
ATGGAGACGGCGGAGATGAATCATAATTCCGGTAAGAGTAATTTGAAGAACGTTGATGCAACGGAGATCGAGTTCAAGATTCTGGCGGCTTTGCGATCACGCGTAACCTACCTCAGAAATGAAGCAGACTGCTTCACCTTGGTGAGTGTGAGGAGGATGTTAGAGGAAGATATTGGATTGGAGAAATGTGATTTGGATGTGTATAAGAGCTTTGTTAAAGAGCATTTGGTTAAGTGTTTAGAAGAAGCTGGGAATAATGATACTTCGGAGAATTCTCAAGAAACTGAGAGGGAAGACGATGAGATTCCAACTAAAGAAGTAGCAGAACAATCTGAAGAGCACGAGCCAATGAACGATGCTGGTGAAGAGAACACATCGAAAAGGGAAGCTAAAGATGTGAAGGGCAAGGGAAATAAAGAAACCCTGCAGAGGGATATAAAGAGAGCCCTTCGGAAGAGAGCTTCATATATTAAGGCTAATTCAGAGACAATTACAATGGCTTCACTTCGTCGACTTCTAGAGGAAGATCTTAAATTAGAGAAGGAGTCTCTTGATCTATTTAAGAAGTTCATTAACAAAGAATTGGATGAAGTACTACAACTTCCTGATGCTCCTAAATGTTCGACTGAGTCTATTGTGAAAAATGTGAAGAAAAAGGTCAAGAGCACACCATCTAAGATGGTAAGCAGTGAATACAATTCTGATTCAGATACTGAGGGGAATGTGGACAACGAGGAGGTAGCTGTAAAGAAGACAATGGCCCGAAAAGTTAAATTATCAAAACCAGAGATGATGGGAAAACGGAAAAGTGAAAATGGTAAACAAGTATCTGGAAGAAAGAAAGCAAAACATACAGAAATAGATTCAGAGAATGACAGTGATTCAGGGGATAGTGAAAAATCTTTGAAGCAGACTAAGGAGACTGCAACTGATGTGTATGGAAAGCGTGTTGAGCATCTCAAATCAGTCATCAAATCTTGTGGGATGAGTGTTCCTCCAAACATTTACAAGAAAGCCAAACAGGCTCCTCAAGAGAAACGTGAGGCTATGCTAATAGAAGAACTTGAGCAGATACTTGCCAAAGAAGGGCTGTCTTCAGATCCTTCAGCGCTAGAGATCAAAGAAGTAAAAAAGAGGAAGAATATATCAAGAGAGCTTGAGGGTATTGATACAAACAACATTGTATGGAACTCAAGGAGAAGATCCTCCACAAGTTTCGCGCCTCCTCCAAAACCGAAAGTAACAGCGGAAAGCGAGAGCGAGAGTGATGAACCGGAAGATTCTGAGAATGAAGAGGAAAGTAATGAAAAAGCTGAGAGAGGAAGCCAAAGCGAAGAAGTAGAAGAAGAATCAAACAGCGAAGAGGATGATGGTGGAGAAGAAAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

463

Amino Acids

52.27

Weight (kDa)

5.03

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 511
AccII CGCG 2 cut(s) 102, 1220
AciI CCGC 3 cut(s) 11, 86, 1247
AclI AACGTT 1 cut(s) 51
AclWI GGATC 2 cut(s) 1094, 1197
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 3 cut(s) 354, 1080, 1089
AfaI GTAC 1 cut(s) 594
AfeI AGCGCT 1 cut(s) 1110
AfiI CCNNNNNNNGG 3 cut(s) 429, 430, 1086
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 3 cut(s) 46, 76, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 7 cut(s) 210, 248, 389, 461, 743, 1156, 1313
AluI AGCT 7 cut(s) 210, 248, 389, 461, 743, 1156, 1313
Alw21I GWGCWC 2 cut(s) 342, 668
Alw26I GTCTC 3 cut(s) 479, 552, 914
AlwI GGATC 2 cut(s) 1094, 1197
AlwNI CAGNNNCTG 1 cut(s) 713
Aor51HI AGCGCT 1 cut(s) 1110
AoxI GGCC 1 cut(s) 759
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 2 cut(s) 1111, 1222
AspS9I GGNCC 1 cut(s) 760
AsuHPI GGTGA 3 cut(s) 127, 154, 374
BanII GRGCYC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 3 cut(s) 300, 758, 1086
Bbv12I GWGCWC 2 cut(s) 342, 668
BccI CCATC 4 cut(s) 673, 679, 787, 1364
BceAI ACGGC 1 cut(s) 24
BcoDI GTCTC 3 cut(s) 479, 552, 914
BfaI CTAG 2 cut(s) 518, 1112
BfmI CTRYAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 1022
BglII AGATCT 1 cut(s) 526
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 760
BmiI GGNNCC 1 cut(s) 1026
BmsI GCATC 4 cut(s) 46, 346, 598, 964
BpiI GAAGAC 3 cut(s) 300, 758, 1086
BplI GAGNNNNNCTC 2 cut(s) 979, 1011
BpuEI CTTGAG 5 cut(s) 261, 1014, 1085, 1177, 1178
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 29, 1273
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 429, 430, 1086
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 5 cut(s) 162, 202, 592, 990, 1372
BseLI CCNNNNNNNGG 3 cut(s) 429, 430, 1086
BseMII CTCAG 6 cut(s) 127, 276, 618, 705, 1275, 1305
BseRI GAGGAG 4 cut(s) 166, 749, 1017, 1215
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 2 cut(s) 102, 1220
BshFI GGCC 1 cut(s) 761
BsiHKAI GWGCWC 2 cut(s) 342, 668
BsiSI CCGG 2 cut(s) 30, 1274
BslI CCNNNNNNNGG 3 cut(s) 429, 430, 1086
BsmAI GTCTC 3 cut(s) 479, 552, 914
BsnI GGCC 1 cut(s) 761
Bsp1286I GDGCHC 3 cut(s) 342, 448, 668
Bsp143I GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
BspACI CCGC 3 cut(s) 11, 86, 1247
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 6 cut(s) 126, 277, 619, 706, 1276, 1306
BspFNI CGCG 2 cut(s) 102, 1220
BspLI GGNNCC 1 cut(s) 1026
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 2 cut(s) 1094, 1197
BspQI GCTCTTC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 878
Bst6I CTCTTC 5 cut(s) 330, 360, 449, 1287, 1356
BstDEI CTNAG 8 cut(s) 113, 285, 627, 675, 714, 915, 1284, 1314
BstF5I GGATG 5 cut(s) 162, 202, 592, 990, 1372
BstFNI CGCG 2 cut(s) 102, 1220
BstH2I RGCGCY 1 cut(s) 1112
BstHHI GCGC 2 cut(s) 1111, 1222
BstKTI GATC 7 cut(s) 69, 98, 529, 556, 1102, 1119, 1205
BstMAI GTCTC 3 cut(s) 479, 552, 914
BstMBI GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
BstMWI GCNNNNNNNGC 2 cut(s) 952, 1022
BstSFI CTRYAG 1 cut(s) 425
BstUI CGCG 2 cut(s) 102, 1220
BstV2I GAAGAC 3 cut(s) 300, 758, 1086
BstX2I RGATCY 3 cut(s) 526, 1099, 1202
BstYI RGATCY 3 cut(s) 526, 1099, 1202
BsuRI GGCC 1 cut(s) 761
BtsCI GGATG 5 cut(s) 162, 202, 592, 990, 1372
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 2 cut(s) 694, 883
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 2 cut(s) 1111, 1222
Cfr13I GGNCC 1 cut(s) 760
Csp6I GTAC 1 cut(s) 593
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 8 cut(s) 113, 285, 627, 675, 714, 915, 1284, 1314
DpnI GATC 7 cut(s) 68, 97, 528, 555, 1101, 1118, 1204
DpnII GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
Eam1104I CTCTTC 5 cut(s) 330, 360, 449, 1287, 1356
EarI CTCTTC 5 cut(s) 330, 360, 449, 1287, 1356
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 448
Eco47III AGCGCT 1 cut(s) 1110
Eco57I CTGAAG 3 cut(s) 354, 1080, 1089
EcoRI GAATTC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 138
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 5 cut(s) 169, 209, 599, 997, 1379
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 518, 1112
GlaI GCGC 2 cut(s) 1110, 1221
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 1112
HaeIII GGCC 1 cut(s) 761
HapII CCGG 2 cut(s) 30, 1274
HhaI GCGC 2 cut(s) 1111, 1222
Hin6I GCGC 2 cut(s) 1109, 1220
HinP1I GCGC 2 cut(s) 1109, 1220
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HpaII CCGG 2 cut(s) 30, 1274
HphI GGTGA 3 cut(s) 127, 154, 374
Hpy166II GTNNAC 3 cut(s) 512, 727, 821
Hpy188III TCNNGA 9 cut(s) 76, 278, 518, 551, 605, 661, 831, 1031, 1149
Hpy8I GTNNAC 3 cut(s) 512, 727, 821
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 5 cut(s) 394, 458, 535, 1079, 1113
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4IV ACGT 2 cut(s) 51, 1039
HpyCH4V TGCA 3 cut(s) 59, 427, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 952, 1022
HpyF3I CTNAG 8 cut(s) 113, 285, 627, 675, 714, 915, 1284, 1314
HpySE526I ACGT 2 cut(s) 51, 1039
HspAI GCGC 2 cut(s) 1109, 1220
Kzo9I GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 616, 1030
LweI GCATC 4 cut(s) 46, 346, 598, 964
MaeI CTAG 2 cut(s) 518, 1112
MaeII ACGT 2 cut(s) 51, 1039
MaeIII GTNAC 2 cut(s) 103, 1240
MalI GATC 7 cut(s) 68, 97, 528, 555, 1101, 1118, 1204
MboI GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
MflI RGATCY 3 cut(s) 526, 1099, 1202
MhlI GDGCHC 3 cut(s) 342, 448, 668
MluCI AATT 9 cut(s) 25, 40, 271, 478, 489, 533, 581, 697, 773
MluI ACGCGT 1 cut(s) 100
MlyI GAGTC 2 cut(s) 554, 638
MmeI TCCRAC 1 cut(s) 332
MseI TTAA 7 cut(s) 216, 231, 471, 531, 561, 573, 771
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 1247
MspI CCGG 2 cut(s) 30, 1274
MvnI CGCG 2 cut(s) 102, 1220
MwoI GCNNNNNNNGC 2 cut(s) 952, 1022
NdeII GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
NlaIV GGNNCC 1 cut(s) 1026
OliI CACNNNNGTG 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 8 cut(s) 19, 79, 304, 704, 863, 881, 1280, 1349
PflFI GACNNNGTC 1 cut(s) 628
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 553, 637
PpsI GAGTC 2 cut(s) 553, 637
Psp1406I AACGTT 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 1 cut(s) 760
PstI CTGCAG 1 cut(s) 429
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 3 cut(s) 526, 1099, 1202
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 140
SalI GTCGAC 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 7 cut(s) 216, 231, 471, 531, 561, 573, 771
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 7 cut(s) 66, 95, 526, 553, 1099, 1116, 1202
Sau96I GGNCC 1 cut(s) 760
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 2 cut(s) 554, 638
SduI GDGCHC 3 cut(s) 342, 448, 668
SfaNI GCATC 4 cut(s) 46, 346, 598, 964
SfcI CTRYAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 5 cut(s) 276, 1029, 1064, 1157, 1192
SmoI CTYRAG 5 cut(s) 276, 1029, 1064, 1157, 1192
Sse9I AATT 9 cut(s) 25, 40, 271, 478, 489, 533, 581, 697, 773
SsiI CCGC 3 cut(s) 11, 86, 1247
SspMI CTAG 2 cut(s) 518, 1112
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 878
TaiI ACGT 2 cut(s) 54, 1042
TaqI TCGA 4 cut(s) 69, 377, 511, 623
TasI AATT 9 cut(s) 25, 40, 271, 478, 489, 533, 581, 697, 773
TatI WGTACW 1 cut(s) 592
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 8 cut(s) 19, 79, 304, 704, 863, 881, 1280, 1349
Tru1I TTAA 7 cut(s) 216, 231, 471, 531, 561, 573, 771
Tru9I TTAA 7 cut(s) 216, 231, 471, 531, 561, 573, 771
TscAI CASTG 2 cut(s) 694, 883
TspDTI ATGAA 9 cut(s) 32, 135, 365, 453, 559, 603, 1284, 1305, 1320
TspGWI ACGGA 2 cut(s) 77, 817
TspRI CASTG 2 cut(s) 694, 883
Tth111I GACNNNGTC 1 cut(s) 628
XapI RAATTY 1 cut(s) 271
XbaI TCTAGA 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 2 cut(s) 518, 1112
ZrmI AGTACT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.