MD15G1351600.v1.1

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007419
Physical Location & Seq
Forward (+)
41810075 .. 41816815
6741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1351600.v1.1.491

Sequence Viewer

Length: 1620 bp
ATGGTGGAGGATGCGCAAGATGGCGAGAGCCCTCTGAAGGAGACGCACGATATCGAGTCCCAGATTAAGAGTGCTATGCGCTTACGCGTCCCTTACTTCAAAGAACAATCCGATTCTTTGACTTTTGAGGGCGTCCGAAGAGTCTTAGAGAAAGACTTGGGCTTGGAGACATTTGCGTTGGATGTGCACAAAAGATTTGTCAAGGAACATTTGGTGGAGGTCTTAGAAGGTGCTGTTGATGACAATACCTCAAAGACATCGGGGGAGACTGATGAAAAAAGTTTGGTTAAAGGAGAAGTAGCAGAATCACTCAAACGAAAGTCAAATAAAGACGCGAAGGAAACCTGTTCAGAAGATGAGGAGAAAATGGAAGACTCTCCTGTAATGGGGCTGCTGACAGGGCATAAAGTGGCGAAAACTGGAACTGAAGAAACTAAAACTACCAACCAAAATAAGGCTCCAACTGAGAGTGTGATAAAGTCAGCCCTTAGAAAAAGGGGTTCTTATATCAAAGCTAATTCCGAAAAGATTACTCTGGCTGGACTTCGCCGACTTTTGGAGGAAGATCTTAAGCTTGAGAAATATACTCTTGACCCCTTTAAGAAGTTTATAAGTCAGCAACTAGACGAGGTTCTAGAATCTTGTGAAATTTCTGAACCTGCTACAACTGCCAAGAAAAATGTTCTGAAAAGTGCTAAAAGAAAAGCATCCACTAAGGTCAGAAGCGATGAGAGTTCTGGTTCTTTAGATAATAAAGGTAGTGAGGAAGAAGATGAAGTAAAACCTAGAAGCAAAAGTGCTCCAAAAGGAAAGATGCAGAAAAATGCTCAGAGAAAAGCATCCACTAAGGTCAGAAACAATGAGAGTTCTGGTTCTTCAGATAATGAAAGTAGTGAGGAAGAACATGAAGTAAAATGTAGAAGCAAAAGTGCTCTAAAAGGAAAGATGCAGAATACTGATGGTCATAAGAAACGGAAAAGAATGGCTAAGGAGACTAACGTCTCTGGAAAGAAGAGGATCAAGCCTCCTCAAAAAGAACCAGAGGACAAAAGTGACGCAGAAGACACTGGAAATGTCTCTGAAGATGATTGCTCTCAGTCATCTGGTGAAAAACCTATAAAGAAGAAAGAAGTTTCAACAACACCTGCATATGGGAAACGTGTGGAGCATCTACGATCAGTTATCAAAGCATGTGGAATGAGTGTTGCCCCTTCAGTTTACAAGAAAGTGAAGCAGGTGCCTGAGAACAAACGTGAAACTCACCTGATAAAAGAGTTAGAGGAGATACTCTCTAGAGAAGGATTATCTGCACATCCCTCTGAGAAAGAAATCAAGGAAGTCAAAAAGAAAAAGGAAAGGGCAAAAGAGCTCGAAGGCATTGACATGAGTAACATTGTAATGAGCTCACGTAGAAGGTCCACAACTAGTTTTGTGCCTCCTCCAAAGCCCAAAATACCAGTTGAAAGTGATTCTGATGATGCTGAAAGTTCAGATGATGACAATGATGAAGCTGATAACAGTGACAAGGAAGAGAATGAGGTTGAGGACGAGGACATTGAGGATAATGGTAATAGTGACGACAACCATAGTGATGAGGATGAAGCTGATGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

540

Amino Acids

60.18

Weight (kDa)

5.41

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHZ PF09649 452 - 484 4.9e-09 Histone chaperone domain CHZ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AarI CACCTGC 2 cut(s) 1153, 1225
Acc16I TGCGCA 1 cut(s) 15
Acc36I ACCTGC 3 cut(s) 667, 1153, 1225
AccB1I GGYRCC 1 cut(s) 1237
AccII CGCG 2 cut(s) 87, 335
AclWI GGATC 1 cut(s) 1025
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 5 cut(s) 56, 447, 861, 1101, 1197
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 5 cut(s) 37, 386, 454, 556, 1151
AflII CTTAAG 1 cut(s) 569
AflIII ACRYGT 2 cut(s) 85, 1159
AgsI TTSAA 3 cut(s) 100, 1137, 1463
AhlI ACTAGT 1 cut(s) 1424
AluBI AGCT 6 cut(s) 515, 574, 1369, 1404, 1511, 1604
AluI AGCT 6 cut(s) 515, 574, 1369, 1404, 1511, 1604
Alw21I GWGCWC 5 cut(s) 189, 802, 934, 1371, 1406
Alw26I GTCTC 6 cut(s) 35, 161, 260, 986, 1006, 1081
Alw44I GTGCAC 1 cut(s) 185
AlwI GGATC 1 cut(s) 1025
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 648
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
AspLEI GCGC 2 cut(s) 16, 81
AspS9I GGNCC 1 cut(s) 1416
AsuHPI GGTGA 2 cut(s) 1118, 1253
AvaII GGWCC 1 cut(s) 1416
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 1237
BanII GRGCYC 3 cut(s) 32, 1371, 1406
BbsI GAAGAC 2 cut(s) 378, 1068
Bbv12I GWGCWC 5 cut(s) 189, 802, 934, 1371, 1406
BbvI GCAGC 1 cut(s) 378
BccI CCATC 2 cut(s) 14, 953
BcoDI GTCTC 6 cut(s) 35, 161, 260, 986, 1006, 1081
BcuI ACTAGT 1 cut(s) 1424
BfaI CTAG 5 cut(s) 623, 635, 786, 1293, 1425
BfrI CTTAAG 1 cut(s) 569
BfuAI ACCTGC 3 cut(s) 667, 1153, 1225
BglII AGATCT 1 cut(s) 565
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 1416
BmgT120I GGNCC 1 cut(s) 1416
BmiI GGNNCC 2 cut(s) 459, 1239
BmsI GCATC 6 cut(s) 716, 804, 848, 936, 1177, 1468
BoxI GACNNNNGTC 1 cut(s) 998
BpiI GAAGAC 2 cut(s) 378, 1068
BplI GAGNNNNNCTC 2 cut(s) 1274, 1306
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 1409
BsaHI GRCGYC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 386, 454, 556, 1151
Bse1I ACTGG 3 cut(s) 424, 1072, 1457
BseGI GGATG 6 cut(s) 16, 187, 707, 839, 1312, 1603
BseLI CCNNNNNNNGG 5 cut(s) 37, 386, 454, 556, 1151
BseMII CTCAG 5 cut(s) 456, 842, 1109, 1233, 1311
BseNI ACTGG 3 cut(s) 424, 1072, 1457
BseRI GAGGAG 4 cut(s) 374, 1017, 1295, 1428
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 1293
Bsh1236I CGCG 2 cut(s) 87, 335
BshNI GGYRCC 1 cut(s) 1237
BsiHKAI GWGCWC 5 cut(s) 189, 802, 934, 1371, 1406
BslFI GGGAC 2 cut(s) 43, 74
BslI CCNNNNNNNGG 5 cut(s) 37, 386, 454, 556, 1151
BsmAI GTCTC 6 cut(s) 35, 161, 260, 986, 1006, 1081
BsmBI CGTCTC 2 cut(s) 35, 1006
BsmFI GGGAC 2 cut(s) 43, 74
Bsp1286I GDGCHC 6 cut(s) 32, 189, 802, 934, 1371, 1406
Bsp143I GATC 3 cut(s) 565, 1017, 1175
BspCNI CTCAG 5 cut(s) 457, 841, 1108, 1234, 1312
BspFNI CGCG 2 cut(s) 87, 335
BspLI GGNNCC 2 cut(s) 459, 1239
BspMI ACCTGC 3 cut(s) 667, 1153, 1225
BspPI GGATC 1 cut(s) 1025
BspT107I GGYRCC 1 cut(s) 1237
BspTI CTTAAG 1 cut(s) 569
BsrI ACTGG 3 cut(s) 424, 1072, 1457
BssMI GATC 3 cut(s) 565, 1017, 1175
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 1520, 1613
Bst6I CTCTTC 3 cut(s) 133, 1007, 1524
BstACI GRCGYC 1 cut(s) 132
BstAFI CTTAAG 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 1409
BstF5I GGATG 6 cut(s) 16, 187, 707, 839, 1312, 1603
BstFNI CGCG 2 cut(s) 87, 335
BstHHI GCGC 2 cut(s) 16, 81
BstKTI GATC 3 cut(s) 568, 1020, 1178
BstMAI GTCTC 6 cut(s) 35, 161, 260, 986, 1006, 1081
BstMBI GATC 3 cut(s) 565, 1017, 1175
BstMWI GCNNNNNNNGC 2 cut(s) 400, 668
BstNSI RCATGY 1 cut(s) 1194
BstPAI GACNNNNGTC 1 cut(s) 998
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 2 cut(s) 87, 335
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 378, 1068
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 6 cut(s) 16, 187, 707, 839, 1312, 1603
BtsIMutI CAGTG 3 cut(s) 1065, 1525, 1618
BveI ACCTGC 3 cut(s) 667, 1153, 1225
CfoI GCGC 2 cut(s) 16, 81
Cfr13I GGNCC 1 cut(s) 1416
CseI GACGC 5 cut(s) 52, 76, 121, 341, 1064
CspCI CAANNNNNGTGG 2 cut(s) 1174, 1209
CviAII CATG 3 cut(s) 905, 1191, 1384
DpnI GATC 3 cut(s) 567, 1019, 1177
DpnII GATC 3 cut(s) 565, 1017, 1175
Eam1104I CTCTTC 3 cut(s) 133, 1007, 1524
EarI CTCTTC 3 cut(s) 133, 1007, 1524
Ecl136II GAGCTC 2 cut(s) 1369, 1404
Eco24I GRGCYC 3 cut(s) 32, 1371, 1406
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 1416
Eco53kI GAGCTC 2 cut(s) 1369, 1404
Eco57I CTGAAG 5 cut(s) 56, 447, 861, 1101, 1197
EcoICRI GAGCTC 2 cut(s) 1369, 1404
EcoRV GATATC 1 cut(s) 52
EcoT38I GRGCYC 3 cut(s) 32, 1371, 1406
Esp3I CGTCTC 2 cut(s) 35, 1006
FaeI CATG 3 cut(s) 908, 1194, 1387
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 2 cut(s) 43, 74
FatI CATG 3 cut(s) 904, 1190, 1383
FauNDI CATATG 1 cut(s) 1150
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 6 cut(s) 23, 194, 694, 826, 1299, 1610
FriOI GRGCYC 3 cut(s) 32, 1371, 1406
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 5 cut(s) 623, 635, 786, 1293, 1425
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 2 cut(s) 15, 80
GluI GCNGC 1 cut(s) 392
HgaI GACGC 5 cut(s) 52, 76, 121, 341, 1064
HhaI GCGC 2 cut(s) 16, 81
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 908, 1194, 1387
Hin6I GCGC 2 cut(s) 14, 79
HinP1I GCGC 2 cut(s) 14, 79
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 7 cut(s) 56, 113, 141, 305, 374, 638, 1469
HphI GGTGA 2 cut(s) 1118, 1253
Hpy166II GTNNAC 3 cut(s) 187, 1219, 1419
Hpy188III TCNNGA 4 cut(s) 590, 635, 1005, 1293
Hpy8I GTNNAC 3 cut(s) 187, 1219, 1419
HpyAV CCTTC 7 cut(s) 31, 221, 331, 1221, 1292, 1367, 1407
HpyCH4III ACNGT 2 cut(s) 1520, 1613
HpyCH4IV ACGT 4 cut(s) 999, 1159, 1252, 1408
HpyCH4V TGCA 5 cut(s) 187, 817, 949, 1148, 1310
HpyF10VI GCNNNNNNNGC 2 cut(s) 400, 668
HpySE526I ACGT 4 cut(s) 999, 1159, 1252, 1408
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 908, 1194, 1387
HspAI GCGC 2 cut(s) 14, 79
Kzo9I GATC 3 cut(s) 565, 1017, 1175
LmnI GCTCC 3 cut(s) 463, 805, 1165
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 6 cut(s) 716, 804, 848, 936, 1177, 1468
MaeI CTAG 5 cut(s) 623, 635, 786, 1293, 1425
MaeII ACGT 4 cut(s) 999, 1159, 1252, 1408
MaeIII GTNAC 4 cut(s) 1052, 1388, 1520, 1574
MalI GATC 3 cut(s) 567, 1019, 1177
MboI GATC 3 cut(s) 565, 1017, 1175
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 6 cut(s) 32, 189, 802, 934, 1371, 1406
MluCI AATT 2 cut(s) 517, 648
MluI ACGCGT 1 cut(s) 85
MlyI GAGTC 3 cut(s) 65, 150, 368
MmeI TCCRAC 2 cut(s) 159, 485
MseI TTAA 5 cut(s) 66, 288, 570, 600, 1618
MslI CAYNNNNRTG 3 cut(s) 1382, 1397, 1590
MspCI CTTAAG 1 cut(s) 569
MvnI CGCG 2 cut(s) 87, 335
MwoI GCNNNNNNNGC 2 cut(s) 400, 668
NdeI CATATG 1 cut(s) 1150
NdeII GATC 3 cut(s) 565, 1017, 1175
NlaIII CATG 3 cut(s) 908, 1194, 1387
NlaIV GGNNCC 2 cut(s) 459, 1239
NmuCI GTSAC 3 cut(s) 1052, 1520, 1574
NsbI TGCGCA 1 cut(s) 15
NspI RCATGY 1 cut(s) 1194
PaqCI CACCTGC 2 cut(s) 1153, 1225
PfeI GAWTC 4 cut(s) 113, 305, 638, 1469
PkrI GCNGC 1 cut(s) 393
PleI GAGTC 3 cut(s) 64, 149, 368
PpsI GAGTC 3 cut(s) 64, 149, 368
Ppu21I YACGTR 1 cut(s) 1409
PshAI GACNNNNGTC 1 cut(s) 998
PsiI TTATAA 1 cut(s) 611
Psp124BI GAGCTC 2 cut(s) 1371, 1406
PspN4I GGNNCC 2 cut(s) 459, 1239
PspPI GGNCC 1 cut(s) 1416
PsuI RGATCY 1 cut(s) 565
RseI CAYNNNNRTG 3 cut(s) 1382, 1397, 1590
SacI GAGCTC 2 cut(s) 1371, 1406
SaqAI TTAA 5 cut(s) 66, 288, 570, 600, 1618
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 3 cut(s) 565, 1017, 1175
Sau96I GGNCC 1 cut(s) 1416
SchI GAGTC 3 cut(s) 65, 150, 368
SduI GDGCHC 6 cut(s) 32, 189, 802, 934, 1371, 1406
SfaNI GCATC 6 cut(s) 716, 804, 848, 936, 1177, 1468
SinI GGWCC 1 cut(s) 1416
SmiMI CAYNNNNRTG 3 cut(s) 1382, 1397, 1590
SmlI CTYRAG 2 cut(s) 569, 575
SmoI CTYRAG 2 cut(s) 569, 575
SpeI ACTAGT 1 cut(s) 1424
Sse9I AATT 2 cut(s) 517, 648
SspMI CTAG 5 cut(s) 623, 635, 786, 1293, 1425
SstI GAGCTC 2 cut(s) 1371, 1406
TaaI ACNGT 2 cut(s) 1520, 1613
TaiI ACGT 4 cut(s) 1002, 1162, 1255, 1411
TaqI TCGA 2 cut(s) 54, 1371
TasI AATT 2 cut(s) 517, 648
TfiI GAWTC 4 cut(s) 113, 305, 638, 1469
Tru1I TTAA 5 cut(s) 66, 288, 570, 600, 1618
Tru9I TTAA 5 cut(s) 66, 288, 570, 600, 1618
TscAI CASTG 3 cut(s) 1072, 1525, 1618
TseFI GTSAC 3 cut(s) 1052, 1520, 1574
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 3 cut(s) 1052, 1520, 1574
TspDTI ATGAA 6 cut(s) 288, 789, 900, 921, 1521, 1614
TspGWI ACGGA 1 cut(s) 988
TspRI CASTG 3 cut(s) 1072, 1525, 1618
Vha464I CTTAAG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 1416
XapI RAATTY 1 cut(s) 648
XbaI TCTAGA 2 cut(s) 634, 1292
XceI RCATGY 1 cut(s) 1194
XspI CTAG 5 cut(s) 623, 635, 786, 1293, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.