AT4G08310

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007419
Physical Location & Seq
Reverse (-)
5248806 .. 5252327
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08310.1

Sequence Viewer

Length: 1515 bp
ATGTCTGACGGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCGACAAGATTGATTTGAAGGACGGTGAAGCAACAACACCACCAAAAACAGATATCGAGTCACAGATTCTCGCGGCTATGCAGTCCCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCACCTTTGAAGGTGTGCGGAGGTTGCTGGAGGAGGATCTGAAATTGGAGAAACATGCTTTGGATGTGCATAAGAGCTTTGTTAAGCAACATTTGGTTCAGTGCTTAGCAGGTGCTGAGAATGATGAAACTTCAGAAAATTCTCTAGAAACTGAGAAGAAAGATGATGTAACTCCAGTGAAAGAAGCAGCAGAGTTATCTAAAGAGCACACGACGAAAAAAGATGGTAAGGAAGATATGACTGGTGATGATGAGAAAACAAAAGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACGTCCAAATCTGTTGCTGAGCAAACAAAGGATGAGGACAAAGAGGTCCTGCAGAGTGATATAAAGAAAGCCCTTCGTAAAAGGTCTTCTTATATTAAGGCTAATTCAGAGAAAATTACAATGGGTTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTATTCTCTTGACCCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCATGAAGCTACACAATCTTCAACTAAGGCTCAGAGGAAACCAGTATCTAAGAAGGTCAAGAGCACACCAGCTAAAAACTCAGACAGTGAAGAAATGTTTGATTCAGATGGTGAAGACGAGGAGGAGGACAAGGAAGTAGCTGTAAAAAAGAAGATGGCGGAGAAAAGAAAATTATCAAAGTCAGAGGGAACCGGAAAGCGGAAACGTGAAAAGGAGAAACCTGCCTCTGCAAAGAAGACAAAACAAACAGATTCACAGAGCGACAGTGACGCAGGAGAAAAGGCACCATCTTCAGAAAAATCTGTAAAGAAACCGGAAACTCCAACGACTGGCTATGGGAAGCGTGTTGAGCACCTTAAATCGATCATCAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGAGGAGAAACGCGAGGAAATTCTGATTAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTTGTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCAAGAAAAGAAAAGAAAGAACAAAGGAGCTTGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCAAGGAGAAGATCCAGCGCAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGATTCAGAAGATTCTGAGAATGAAGAGGATGAGGATGAAGAAGTAGTAGTAGAAGAAGAAGAGGAGGAAGAAGACGAGGGAGGTAGTGAAGATGGCGGAGAGGGAAGTCAAAACGAAGGAGAACTAAAAACTGAGGATGGTGGTGAAGAAGAAAGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

504

Amino Acids

56.24

Weight (kDa)

4.89

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHZ PF09649 411 - 441 3.5e-08 Histone chaperone domain CHZ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
AasI GACNNNNNNGTC 1 cut(s) 509
Acc36I ACCTGC 2 cut(s) 266, 922
AccB1I GGYRCC 1 cut(s) 976
AccB7I CCANNNNNTGG 1 cut(s) 1022
AccI GTMKAC 1 cut(s) 601
AccII CGCG 2 cut(s) 119, 1131
AciI CCGC 5 cut(s) 119, 184, 851, 892, 1449
AclWI GGATC 2 cut(s) 210, 1287
AcsI RAATTY 3 cut(s) 304, 656, 1137
AcuI CTGAAG 3 cut(s) 282, 969, 1179
AfaI GTAC 1 cut(s) 1311
AfiI CCNNNNNNNGG 4 cut(s) 443, 891, 1022, 1176
AflII CTTAAG 1 cut(s) 1154
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 4 cut(s) 64, 176, 714, 1284
AjiI CACGTC 1 cut(s) 468
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 6 cut(s) 243, 692, 701, 764, 833, 1246
AluI AGCT 6 cut(s) 243, 692, 701, 764, 833, 1246
Alw21I GWGCWC 3 cut(s) 375, 758, 1047
AlwI GGATC 2 cut(s) 210, 1287
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 3 cut(s) 304, 656, 1137
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AseI ATTAAT 1 cut(s) 663
AspLEI GCGC 1 cut(s) 1301
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 5 cut(s) 83, 160, 422, 815, 1508
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 511
AxyI CCTNAGG 1 cut(s) 1119
BanI GGYRCC 1 cut(s) 976
BarI GAAGNNNNNNTAC 2 cut(s) 535, 567
BbsI GAAGAC 4 cut(s) 543, 813, 935, 1431
Bbv12I GWGCWC 3 cut(s) 375, 758, 1047
BbvI GCAGC 1 cut(s) 365
BccI CCATC 8 cut(s) 383, 436, 794, 841, 988, 1096, 1439, 1484
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 2 cut(s) 311, 674
BfmI CTRYAG 1 cut(s) 515
BfrI CTTAAG 1 cut(s) 1154
BfuAI ACCTGC 2 cut(s) 266, 922
BglI GCCNNNNNGGC 1 cut(s) 1112
BglII AGATCT 2 cut(s) 39, 616
BisI GCNGC 2 cut(s) 120, 354
BlpI GCTNAGC 2 cut(s) 271, 483
BlsI GCNGC 2 cut(s) 121, 355
Bme18I GGWCC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 3 cut(s) 883, 978, 1116
BpiI GAAGAC 4 cut(s) 543, 813, 935, 1431
BplI GAGNNNNNCTC 2 cut(s) 1069, 1101
BpmI CTGGAG 2 cut(s) 215, 324
Bpu1102I GCTNAGC 2 cut(s) 271, 483
BpuEI CTTGAG 1 cut(s) 1268
Bsa29I ATCGAT 1 cut(s) 1055
BsaWI WCCGGW 2 cut(s) 884, 1006
Bsc4I CCNNNNNNNGG 4 cut(s) 443, 891, 1022, 1176
Bse1I ACTGG 4 cut(s) 341, 412, 734, 1027
Bse21I CCTNAGG 1 cut(s) 1119
BseCI ATCGAT 1 cut(s) 1055
BseGI GGATG 5 cut(s) 235, 502, 1387, 1393, 1495
BseLI CCNNNNNNNGG 4 cut(s) 443, 891, 1022, 1176
BseMII CTCAG 9 cut(s) 160, 273, 309, 474, 737, 786, 1110, 1359, 1476
BseNI ACTGG 4 cut(s) 341, 412, 734, 1027
BseRI GAGGAG 6 cut(s) 212, 827, 830, 1136, 1305, 1430
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 119, 1131
BshNI GGYRCC 1 cut(s) 976
BshVI ATCGAT 1 cut(s) 1055
BsiHKAI GWGCWC 3 cut(s) 375, 758, 1047
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 3 cut(s) 45, 885, 1007
BslFI GGGAC 2 cut(s) 115, 459
BslI CCNNNNNNNGG 4 cut(s) 443, 891, 1022, 1176
BsmFI GGGAC 2 cut(s) 115, 459
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 3 cut(s) 375, 758, 1047
Bsp143I GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
Bsp1720I GCTNAGC 2 cut(s) 271, 483
BspACI CCGC 5 cut(s) 119, 184, 851, 892, 1449
BspCNI CTCAG 9 cut(s) 159, 274, 310, 475, 736, 785, 1111, 1360, 1477
BspDI ATCGAT 1 cut(s) 1055
BspFNI CGCG 2 cut(s) 119, 1131
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 3 cut(s) 883, 978, 1116
BspMAI CTGCAG 1 cut(s) 519
BspMI ACCTGC 2 cut(s) 266, 922
BspPI GGATC 2 cut(s) 210, 1287
BspT107I GGYRCC 1 cut(s) 976
BspTI CTTAAG 1 cut(s) 1154
BsrI ACTGG 4 cut(s) 341, 412, 734, 1027
BssMI GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
Bst4CI ACNGT 3 cut(s) 71, 779, 959
Bst6I CTCTTC 2 cut(s) 1371, 1407
BstAFI CTTAAG 1 cut(s) 1154
BstC8I GCNNGC 1 cut(s) 1113
BstF5I GGATG 5 cut(s) 235, 502, 1387, 1393, 1495
BstFNI CGCG 2 cut(s) 119, 1131
BstHHI GCGC 1 cut(s) 1301
BstKTI GATC 6 cut(s) 42, 205, 619, 1059, 1209, 1295
BstMBI GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
BstMWI GCNNNNNNNGC 4 cut(s) 190, 698, 1042, 1112
BstNSI RCATGY 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 515
BstUI CGCG 2 cut(s) 119, 1131
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 4 cut(s) 543, 813, 935, 1431
BstX2I RGATCY 4 cut(s) 39, 202, 616, 1292
BstYI RGATCY 4 cut(s) 39, 202, 616, 1292
Bsu15I ATCGAT 1 cut(s) 1055
Bsu36I CCTNAGG 1 cut(s) 1119
BsuTUI ATCGAT 1 cut(s) 1055
BtgZI GCGATG 1 cut(s) 1365
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 5 cut(s) 235, 502, 1387, 1393, 1495
BtsIMutI CAGTG 4 cut(s) 272, 348, 784, 964
BveI ACCTGC 2 cut(s) 266, 922
Cac8I GCNNGC 1 cut(s) 1113
CaiI CAGNNNCTG 1 cut(s) 281
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 1301
Cfr13I GGNCC 1 cut(s) 511
ClaI ATCGAT 1 cut(s) 1055
CseI GACGC 1 cut(s) 971
Csp6I GTAC 1 cut(s) 1310
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 2 cut(s) 221, 695
CviQI GTAC 1 cut(s) 1310
DpnI GATC 6 cut(s) 41, 204, 618, 1058, 1208, 1294
DpnII GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 1371, 1407
EarI CTCTTC 2 cut(s) 1371, 1407
EciI GGCGGA 2 cut(s) 866, 1464
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 3 cut(s) 282, 969, 1179
Eco81I CCTNAGG 1 cut(s) 1119
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 511
EcoRV GATATC 1 cut(s) 100
FaeI CATG 2 cut(s) 224, 698
FaiI YATR 9 cut(s) 35, 125, 222, 237, 404, 527, 558, 696, 1029
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FaqI GGGAC 2 cut(s) 115, 459
FatI CATG 2 cut(s) 220, 694
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 2 cut(s) 120, 354
FokI GGATG 5 cut(s) 242, 509, 1394, 1400, 1502
Fsp4HI GCNGC 2 cut(s) 120, 354
FspBI CTAG 2 cut(s) 311, 674
GlaI GCGC 1 cut(s) 1300
GluI GCNGC 2 cut(s) 120, 354
GsuI CTGGAG 2 cut(s) 215, 324
HapII CCGG 3 cut(s) 45, 885, 1007
HgaI GACGC 1 cut(s) 971
HhaI GCGC 1 cut(s) 1301
Hin1II CATG 2 cut(s) 224, 698
Hin6I GCGC 1 cut(s) 1299
HinP1I GCGC 1 cut(s) 1299
HincII GTYRAC 1 cut(s) 602
HindII GTYRAC 1 cut(s) 602
HinfI GANTC 8 cut(s) 14, 104, 112, 431, 794, 944, 1355, 1364
HpaII CCGG 3 cut(s) 45, 885, 1007
HphI GGTGA 5 cut(s) 83, 160, 422, 815, 1508
Hpy166II GTNNAC 3 cut(s) 593, 602, 1096
Hpy188III TCNNGA 7 cut(s) 132, 311, 641, 695, 751, 1118, 1219
Hpy8I GTNNAC 3 cut(s) 593, 602, 1096
Hpy99I CGWCG 4 cut(s) 22, 25, 382, 603
HpyAV CCTTC 7 cut(s) 58, 170, 548, 739, 1169, 1203, 1463
HpyCH4III ACNGT 3 cut(s) 71, 779, 959
HpyCH4IV ACGT 2 cut(s) 467, 898
HpyCH4V TGCA 5 cut(s) 127, 235, 517, 923, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 698, 1042, 1112
HpySE526I ACGT 2 cut(s) 467, 898
Hsp92II CATG 2 cut(s) 224, 698
HspAI GCGC 1 cut(s) 1299
Kzo9I GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
LmnI GCTCC 3 cut(s) 610, 1120, 1243
Lsp1109I GCAGC 1 cut(s) 365
MaeI CTAG 2 cut(s) 311, 674
MaeII ACGT 2 cut(s) 467, 898
MaeIII GTNAC 5 cut(s) 105, 136, 334, 959, 1161
MalI GATC 6 cut(s) 41, 204, 618, 1058, 1208, 1294
MboI GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
MflI RGATCY 4 cut(s) 39, 202, 616, 1292
MhlI GDGCHC 3 cut(s) 375, 758, 1047
MluCI AATT 8 cut(s) 209, 304, 568, 579, 623, 656, 863, 1137
MlyI GAGTC 2 cut(s) 8, 113
MmeI TCCRAC 1 cut(s) 1040
MseI TTAA 7 cut(s) 249, 561, 621, 663, 1050, 1146, 1155
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 3 cut(s) 45, 885, 1007
MvnI CGCG 2 cut(s) 119, 1131
MwoI GCNNNNNNNGC 4 cut(s) 190, 698, 1042, 1112
NdeII GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
NlaIII CATG 2 cut(s) 224, 698
NlaIV GGNNCC 3 cut(s) 883, 978, 1116
NmuCI GTSAC 2 cut(s) 105, 959
NspI RCATGY 1 cut(s) 224
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 266
PfeI GAWTC 6 cut(s) 112, 431, 794, 944, 1355, 1364
PflMI CCANNNNNTGG 1 cut(s) 1022
PkrI GCNGC 2 cut(s) 121, 355
PleI GAGTC 2 cut(s) 8, 112
PpsI GAGTC 2 cut(s) 8, 112
PpuMI RGGWCCY 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 883, 978, 1116
PspPI GGNCC 1 cut(s) 511
PspPPI RGGWCCY 1 cut(s) 511
PstI CTGCAG 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 4 cut(s) 39, 202, 616, 1292
RsaI GTAC 1 cut(s) 1311
RsaNI GTAC 1 cut(s) 1310
SalI GTCGAC 1 cut(s) 600
SaqAI TTAA 7 cut(s) 249, 561, 621, 663, 1050, 1146, 1155
SatI GCNGC 2 cut(s) 120, 354
Sau3AI GATC 6 cut(s) 39, 202, 616, 1056, 1206, 1292
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 2 cut(s) 8, 113
SduI GDGCHC 3 cut(s) 375, 758, 1047
SfcI CTRYAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 1154, 1247
SmoI CTYRAG 2 cut(s) 1154, 1247
Sse9I AATT 8 cut(s) 209, 304, 568, 579, 623, 656, 863, 1137
SsiI CCGC 5 cut(s) 119, 184, 851, 892, 1449
SspMI CTAG 2 cut(s) 311, 674
TaaI ACNGT 3 cut(s) 71, 779, 959
TaiI ACGT 2 cut(s) 470, 901
TaqI TCGA 5 cut(s) 17, 102, 601, 1055, 1277
TasI AATT 8 cut(s) 209, 304, 568, 579, 623, 656, 863, 1137
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 6 cut(s) 112, 431, 794, 944, 1355, 1364
Tru1I TTAA 7 cut(s) 249, 561, 621, 663, 1050, 1146, 1155
Tru9I TTAA 7 cut(s) 249, 561, 621, 663, 1050, 1146, 1155
TscAI CASTG 4 cut(s) 272, 348, 784, 964
TseFI GTSAC 2 cut(s) 105, 959
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 2 cut(s) 105, 959
TspDTI ATGAA 6 cut(s) 306, 649, 693, 711, 1389, 1404
TspRI CASTG 4 cut(s) 272, 348, 784, 964
Van91I CCANNNNNTGG 1 cut(s) 1022
Vha464I CTTAAG 1 cut(s) 1154
VpaK11BI GGWCC 1 cut(s) 511
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 3 cut(s) 304, 656, 1137
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 601
XspI CTAG 2 cut(s) 311, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.