RLG00000011786

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007419
Physical Location & Seq
Forward (+)
12640095 .. 12645157
5063 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011786

Sequence Viewer

Length: 1470 bp
ATGGCGGAGGTGGTAGAAGACAGCGAGGCTCCTTTGAAGAAGGAGGAGGAGGAGACGAGCGATATGGAGGCGAAGATATTGGATGCTATGCGGGCACGAATCCCACACTTCAAGGAGCAATCAGATTCTTTGACCTTTGTGAATGTACGAAGAGTATTAGAGAAAGACTTGGGTTTGGAGTCATCTGCATTGGATGCGCACAAAGGATTTGTCAAGGAACATTTATTGAAGTGCTTAGAAGGCGCTGGTGAGGACAATACCTCAAAGAGTTCTGGGCAGACTGATGAAAAAAGTCTGATTAAAGGGGAAGCAGCAGATTCTATTGAAGGGCATGAATCGAATAAAAATATGAAGAAAACTAGCTCAGCAGATGAGGAGAAGGTCGAAGACTCTCCTGCATCGGATCTTCTAACAGGGCACAAAACAGCCAAATCAAAAACTGAGGGATCTAAAAGCTCTATCAACAAAAAGGCTCCAACTGAGGCTATGATAAAGTTAGCCCTTGGAAAAAGAGGTTCATATATCAAAGCTAATACCGAGAAGCTTACTATGGGTGAACTTCGTCGAGTTTTAGAGAAAGATCTTAAACTTGAGACATTTAGTCTTGATCCTTACAAGAAGTTTATAAATCAGCAATTAGACGATGTTTTAGAATCTTGTGAAGATCCTGAACCTGTCAAAAATGTCAAGAAAAATGTTAAGAAACCTCAGAGAAAAACAACTCCTGAGGAGATAAGTGAAGAGAGTTCTGGTCCTGCAGATAGTGAAACTGATGAGGAAGAAGATGAAGTGAAACCTAGAAAAAAAAGTGTTACAAAAGGTAAGATGCAGAATTCTGACGGGCTGAAGAAACGGAAAAGATTGGCAAAGGAGACCAACATATCTGGAAAGAAGCGGATCAAGTCTCTTAAGGCAGATTCAGAGGAAAAAAGTGATGCAAAGGACGGTGGAAATGTGTCTGAAGATGAAGATTCTCAGTCATCTGCTGAAAAACCTGTGAAGAAGAAAGAAGTCTCAACACCCGCGTACGGTAAACGGGTGGAGCATCTAAGATCAGTTATCAAAGCTTGTGGAATGAGCGTTCCCCCCTCAATTTACAAGAAAGTCAAGCAGGTGCCTGAGAACAAACGTGAAGTTCACCTGATAAAGGAGTTAGAGGACATACTCGGTCGAGAAGGGTTATCTTCCAGTCCCACTGAGAAAGAAATCAAGGAAGTCAAAAAGAAAAAGGAGAAGGCTAAAGAGCTTGAGGGCATTGACATGAGTAATATTGTAACGAGTTCACGTAGAAGGTCCACGACTAGTTTTATACCTCCTCCCAAGCCCAAAATACCAGTTGATAGTGATTCTGATGCTGAAGATACAGATGATGACAATGATGAGGAAGAGAATGAGGTTGAGGACGAGGATAATAGTAGTAGTGATGACAACCATAGTGATAAGGATGATGGTGATGATGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

490

Amino Acids

54.33

Weight (kDa)

5.16

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHZ PF09649 411 - 443 1.6e-09 Histone chaperone domain CHZ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AarI CACCTGC 1 cut(s) 1102
Acc16I TGCGCA 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 1102
AccB1I GGYRCC 1 cut(s) 1114
AccII CGCG 1 cut(s) 1025
AciI CCGC 4 cut(s) 5, 91, 895, 1023
AclWI GGATC 5 cut(s) 411, 454, 602, 659, 905
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 3 cut(s) 866, 981, 1377
AfaI GTAC 2 cut(s) 147, 1028
AfiI CCNNNNNNNGG 2 cut(s) 1028, 1147
AflII CTTAAG 1 cut(s) 908
AgsI TTSAA 4 cut(s) 37, 112, 229, 326
AhdI GACNNNNNGTC 1 cut(s) 600
AhlI ACTAGT 1 cut(s) 1301
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
AluBI AGCT 6 cut(s) 363, 456, 530, 544, 1067, 1246
AluI AGCT 6 cut(s) 363, 456, 530, 544, 1067, 1246
Alw26I GTCTC 5 cut(s) 47, 587, 866, 909, 1018
AlwI GGATC 5 cut(s) 411, 454, 602, 659, 905
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 832
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AspLEI GCGC 2 cut(s) 199, 245
AspS9I GGNCC 2 cut(s) 752, 1293
AsuHPI GGTGA 4 cut(s) 260, 566, 1130, 1463
AvaII GGWCC 2 cut(s) 752, 1293
AxyI CCTNAGG 1 cut(s) 726
BaeGI GKGCMC 2 cut(s) 97, 420
BanI GGYRCC 1 cut(s) 1114
BbsI GAAGAC 2 cut(s) 24, 393
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 1442
BcoDI GTCTC 5 cut(s) 47, 587, 866, 909, 1018
BcuI ACTAGT 1 cut(s) 1301
BfaI CTAG 3 cut(s) 360, 798, 1302
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 1102
BglII AGATCT 1 cut(s) 580
BisI GCNGC 1 cut(s) 312
BlpI GCTNAGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 752, 1293
BmeRI GACNNNNNGTC 1 cut(s) 600
BmgT120I GGNCC 2 cut(s) 752, 1293
BmiI GGNNCC 3 cut(s) 30, 474, 1116
BmsI GCATC 7 cut(s) 73, 184, 407, 816, 925, 1054, 1342
BpiI GAAGAC 2 cut(s) 24, 393
Bpu1102I GCTNAGC 1 cut(s) 364
BpuEI CTTGAG 2 cut(s) 611, 1268
BsaAI YACGTR 1 cut(s) 1286
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 1028, 1147
Bse1I ACTGG 2 cut(s) 1188, 1334
Bse21I CCTNAGG 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 3 cut(s) 88, 199, 1450
BseLI CCNNNNNNNGG 2 cut(s) 1028, 1147
BseMII CTCAG 8 cut(s) 378, 432, 471, 717, 722, 989, 1110, 1188
BseNI ACTGG 2 cut(s) 1188, 1334
BseRI GAGGAG 6 cut(s) 59, 62, 65, 389, 743, 1305
BseSI GKGCMC 2 cut(s) 97, 420
BseXI GCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 1025
Bsh1285I CGRYCG 1 cut(s) 1171
BshNI GGYRCC 1 cut(s) 1114
BsiEI CGRYCG 1 cut(s) 1171
BsiWI CGTACG 1 cut(s) 1026
BslFI GGGAC 1 cut(s) 1176
BslI CCNNNNNNNGG 2 cut(s) 1028, 1147
BsmAI GTCTC 5 cut(s) 47, 587, 866, 909, 1018
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 1176
Bso31I GGTCTC 1 cut(s) 866
Bsp1286I GDGCHC 2 cut(s) 97, 420
Bsp143I GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
Bsp1720I GCTNAGC 1 cut(s) 364
BspACI CCGC 4 cut(s) 5, 91, 895, 1023
BspCNI CTCAG 8 cut(s) 377, 433, 472, 718, 721, 988, 1111, 1189
BspFNI CGCG 1 cut(s) 1025
BspLI GGNNCC 3 cut(s) 30, 474, 1116
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 1 cut(s) 1102
BspPI GGATC 5 cut(s) 411, 454, 602, 659, 905
BspT107I GGYRCC 1 cut(s) 1114
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 866
BsrI ACTGG 2 cut(s) 1188, 1334
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
BssT1I CCWWGG 1 cut(s) 502
Bst4CI ACNGT 3 cut(s) 947, 1031, 1463
Bst6I CTCTTC 3 cut(s) 145, 735, 1380
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 1286
BstC8I GCNNGC 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 1145
BstF5I GGATG 3 cut(s) 88, 199, 1450
BstFNI CGCG 1 cut(s) 1025
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 199, 245
BstKTI GATC 7 cut(s) 406, 449, 583, 610, 667, 900, 1055
BstMAI GTCTC 5 cut(s) 47, 587, 866, 909, 1018
BstMBI GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
BstMCI CGRYCG 1 cut(s) 1171
BstMWI GCNNNNNNNGC 3 cut(s) 92, 194, 240
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 2 cut(s) 97, 420
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 2 cut(s) 24, 393
BstX2I RGATCY 4 cut(s) 403, 446, 580, 664
BstYI RGATCY 4 cut(s) 403, 446, 580, 664
Bsu36I CCTNAGG 1 cut(s) 726
BtsCI GGATG 3 cut(s) 88, 199, 1450
BtsIMutI CAGTG 2 cut(s) 1194, 1468
BveI ACCTGC 1 cut(s) 1102
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 199, 245
Cfr13I GGNCC 2 cut(s) 752, 1293
Csp6I GTAC 2 cut(s) 146, 1027
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 2 cut(s) 332, 1261
CviQI GTAC 2 cut(s) 146, 1027
DpnI GATC 7 cut(s) 405, 448, 582, 609, 666, 899, 1054
DpnII GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
DriI GACNNNNNGTC 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 145, 735, 1380
Eam1105I GACNNNNNGTC 1 cut(s) 600
EarI CTCTTC 3 cut(s) 145, 735, 1380
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 2 cut(s) 752, 1293
Eco57I CTGAAG 3 cut(s) 866, 981, 1377
Eco81I CCTNAGG 1 cut(s) 726
EcoNI CCTNNNNNAGG 1 cut(s) 1145
EcoRI GAATTC 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 2 cut(s) 335, 1264
FaqI GGGAC 1 cut(s) 1176
FatI CATG 2 cut(s) 331, 1260
FauI CCCGC 2 cut(s) 84, 1030
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 3 cut(s) 95, 206, 1457
Fsp4HI GCNGC 1 cut(s) 312
FspAI RTGCGCAY 1 cut(s) 198
FspBI CTAG 3 cut(s) 360, 798, 1302
FspI TGCGCA 1 cut(s) 198
GlaI GCGC 2 cut(s) 198, 244
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 246
HhaI GCGC 2 cut(s) 199, 245
Hin1II CATG 2 cut(s) 335, 1264
Hin6I GCGC 2 cut(s) 197, 243
HinP1I GCGC 2 cut(s) 197, 243
HindIII AAGCTT 2 cut(s) 542, 1065
HphI GGTGA 4 cut(s) 260, 566, 1130, 1463
Hpy166II GTNNAC 5 cut(s) 557, 1034, 1138, 1283, 1296
Hpy188I TCNGA 8 cut(s) 124, 297, 403, 711, 838, 922, 961, 1351
Hpy188III TCNNGA 6 cut(s) 605, 668, 688, 725, 885, 1172
Hpy8I GTNNAC 5 cut(s) 557, 1034, 1138, 1283, 1296
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 7 cut(s) 34, 233, 320, 373, 1169, 1228, 1284
HpyCH4III ACNGT 3 cut(s) 947, 1031, 1463
HpyCH4IV ACGT 2 cut(s) 1129, 1285
HpyCH4V TGCA 5 cut(s) 188, 398, 758, 829, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 194, 240
HpySE526I ACGT 2 cut(s) 1129, 1285
Hsp92II CATG 2 cut(s) 335, 1264
HspAI GCGC 2 cut(s) 197, 243
Kzo9I GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
LmnI GCTCC 4 cut(s) 34, 115, 478, 1042
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 7 cut(s) 73, 184, 407, 816, 925, 1054, 1342
MaeI CTAG 3 cut(s) 360, 798, 1302
MaeII ACGT 2 cut(s) 1129, 1285
MaeIII GTNAC 2 cut(s) 811, 1273
MalI GATC 7 cut(s) 405, 448, 582, 609, 666, 899, 1054
MboI GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
MflI RGATCY 4 cut(s) 403, 446, 580, 664
MhlI GDGCHC 2 cut(s) 97, 420
MluCI AATT 3 cut(s) 635, 832, 1092
MlyI GAGTC 2 cut(s) 188, 383
MmeI TCCRAC 1 cut(s) 500
MseI TTAA 5 cut(s) 300, 585, 699, 909, 1468
MslI CAYNNNNRTG 1 cut(s) 1259
MspCI CTTAAG 1 cut(s) 908
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 3 cut(s) 92, 194, 240
NdeII GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
NlaIII CATG 2 cut(s) 335, 1264
NlaIV GGNNCC 3 cut(s) 30, 474, 1116
NsbI TGCGCA 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 1102
PfeI GAWTC 8 cut(s) 99, 125, 317, 335, 653, 917, 971, 1346
Pfl23II CGTACG 1 cut(s) 1026
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 187, 383
PpsI GAGTC 2 cut(s) 187, 383
Ppu21I YACGTR 1 cut(s) 1286
PsiI TTATAA 1 cut(s) 626
PspLI CGTACG 1 cut(s) 1026
PspN4I GGNNCC 3 cut(s) 30, 474, 1116
PspPI GGNCC 2 cut(s) 752, 1293
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 4 cut(s) 403, 446, 580, 664
RsaI GTAC 2 cut(s) 147, 1028
RsaNI GTAC 2 cut(s) 146, 1027
RseI CAYNNNNRTG 1 cut(s) 1259
SaqAI TTAA 5 cut(s) 300, 585, 699, 909, 1468
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
Sau96I GGNCC 2 cut(s) 752, 1293
SchI GAGTC 2 cut(s) 188, 383
SduI GDGCHC 2 cut(s) 97, 420
SfaNI GCATC 7 cut(s) 73, 184, 407, 816, 925, 1054, 1342
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 2 cut(s) 752, 1293
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 3 cut(s) 590, 908, 1247
SmoI CTYRAG 3 cut(s) 590, 908, 1247
SpeI ACTAGT 1 cut(s) 1301
Sse9I AATT 3 cut(s) 635, 832, 1092
SsiI CCGC 4 cut(s) 5, 91, 895, 1023
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 360, 798, 1302
StyI CCWWGG 1 cut(s) 502
TaaI ACNGT 3 cut(s) 947, 1031, 1463
TaiI ACGT 2 cut(s) 1132, 1288
TaqI TCGA 4 cut(s) 338, 384, 565, 1171
TaqII GACCGA 1 cut(s) 1157
TasI AATT 3 cut(s) 635, 832, 1092
TfiI GAWTC 8 cut(s) 99, 125, 317, 335, 653, 917, 971, 1346
Tru1I TTAA 5 cut(s) 300, 585, 699, 909, 1468
Tru9I TTAA 5 cut(s) 300, 585, 699, 909, 1468
TscAI CASTG 2 cut(s) 1201, 1468
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 6 cut(s) 300, 348, 365, 507, 801, 981
TspGWI ACGGA 1 cut(s) 868
TspRI CASTG 2 cut(s) 1201, 1468
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 752, 1293
XagI CCTNNNNNAGG 1 cut(s) 1145
XapI RAATTY 1 cut(s) 832
XspI CTAG 3 cut(s) 360, 798, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.