Rw6G031910

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0007419
Physical Location & Seq
Reverse (-)
56023820 .. 56028748
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031910.1

Sequence Viewer

Length: 1467 bp
ATGGCGGAGGTGGTAGAAGACAGCGAGGCTCCTTTGAAGAAGGAGGAGGAGACGAGCGATATGGAGTCGAAGATATTGGATGCTATGCGGGCACGAATCCCACACTTCAAGGAACAATCAGATTCTTTGACCTTTGTGAATGTACGAAGAGTATTAGAGAAAGACTTGGGTTTGGAGCCATCTGCATTGGATGCGCACAAAGGATTTGTCAAGGAACATTTATTGAAGTGCTTAGAAGGCGCTGGTGAGGACAATACCTCAAAGAGTTCTGGGCAGACTGATGAAAAAAGTCTGATTAAAGGGGAAGCAGCAGATTCTATTGAAGGACATGAATCGAATAAAGATATGAAAGAAACTAGCTCAGCAGATGAGGAGAAGGTCGAAGACTCTCCTGCATCGGATCTTCTAACAGGGCATAAAACAGCCAAATCAAAAACTGAGGGATCTAAAAGCTCCATCAACAAAAAGGCTCCAACTGAGGCTATGATAAAGTTAGCCCTTGGAAAAAGAGGTTCATATATCAAAGCTAATACCGAGAAGCTTACTATGGGTGAACTTCGTCGAGTTTTAGAGAAAGATCTTAAACTTGAGACATATAGTCTTGATCCTTACAAGAAGTTTATAAATCAGCAATTAGATGAGGTTTTAGAATCTTGTGAAGATCCTGAACCTGTCAAAAATGTCAAGAAAAATGTTAAGAAACCTCAGAGAAAAACAACTCCTGAGGAGATAAGTGAAGAGAGTTCTGGTCCTGCAGATAGTGAAACTGATGAGGAAGAAGATGAAGTGAAACCTAGAAAAAAAAGTGTTACAAAAGGTAAGATGCAGAATTCTTACGGGCTGAAGAAACGGAAAAGATTGGCAAAGGAGACCAACATCTCTGGAAAGAAGCGGATCAAGTCTCTTAAGGCAGATTCAGAGGAAAAAAGTGATGCAAAGGACGGTGGAAATGTGTCTGAAGATGAAGATTCTCAGTCATCTGCTGAAAAACCTGTGAAGAAGAAAGAAGTTTCAACACCTGTGTACGGTAAACGGGTGGAGCATCTAAGATCAGTTATCAAAGCTTGTGGAATGAGCGTTCCCCCCTCAATTTACAAGAAAGTCAAGCAGGTGCCTGAGAACAAACGTGAAGCTCACCTGATAAAGGAGTTAGAGGACATACTCGGTCGAGAAGGGTTATCTTCCAGTCCCACTGAGAAAGAAATCAAGGAAGTCAAAAAGAAAAAGGAGAAGGCTAAAGAGCTTGAGGGCATTGACATGAGTAATATTGTAACGAGTTCACGTAGAAGGTCCACGACTAGTTTTATACCTCCTCCCAAGCCCAAAATACCAGTTGATAGTGATTCTGATGCTGAAGATACAGACGATGACAATGATGAGGAAGAGAATGAGGTTGAGGACGAGGATAATAGTAGTAGTGATGACAACCATAGTGATAAGGATGATGGTGATGATGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

488

Amino Acids

54.31

Weight (kDa)

5.13

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHZ PF09649 410 - 442 1.6e-09 Histone chaperone domain CHZ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 1 cut(s) 1099
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 1099
AccB1I GGYRCC 1 cut(s) 1111
AciI CCGC 3 cut(s) 5, 88, 892
AclWI GGATC 5 cut(s) 408, 451, 599, 656, 902
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 3 cut(s) 863, 978, 1374
AfaI GTAC 2 cut(s) 144, 1025
AfiI CCNNNNNNNGG 2 cut(s) 1025, 1144
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 5 cut(s) 37, 109, 226, 323, 1014
AhdI GACNNNNNGTC 1 cut(s) 597
AhlI ACTAGT 1 cut(s) 1298
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
AluBI AGCT 7 cut(s) 360, 453, 527, 541, 1064, 1133, 1243
AluI AGCT 7 cut(s) 360, 453, 527, 541, 1064, 1133, 1243
Alw26I GTCTC 4 cut(s) 44, 584, 863, 906
AlwI GGATC 5 cut(s) 408, 451, 599, 656, 902
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 829
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspLEI GCGC 2 cut(s) 196, 242
AspS9I GGNCC 2 cut(s) 749, 1290
AsuHPI GGTGA 4 cut(s) 257, 563, 1127, 1460
AvaII GGWCC 2 cut(s) 749, 1290
AxyI CCTNAGG 1 cut(s) 723
BaeGI GKGCMC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 1111
BbsI GAAGAC 2 cut(s) 24, 390
BbvI GCAGC 1 cut(s) 320
BccI CCATC 3 cut(s) 187, 464, 1439
BcoDI GTCTC 4 cut(s) 44, 584, 863, 906
BcuI ACTAGT 1 cut(s) 1298
BfaI CTAG 3 cut(s) 357, 795, 1299
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 905
BfuAI ACCTGC 1 cut(s) 1099
BglII AGATCT 1 cut(s) 577
BisI GCNGC 1 cut(s) 309
BlpI GCTNAGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 749, 1290
BmeRI GACNNNNNGTC 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 749, 1290
BmiI GGNNCC 4 cut(s) 30, 177, 471, 1113
BmsI GCATC 7 cut(s) 70, 181, 404, 813, 922, 1051, 1339
BpiI GAAGAC 2 cut(s) 24, 390
Bpu1102I GCTNAGC 1 cut(s) 361
BpuEI CTTGAG 2 cut(s) 608, 1265
BsaAI YACGTR 1 cut(s) 1283
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 1 cut(s) 499
Bsc4I CCNNNNNNNGG 2 cut(s) 1025, 1144
Bse1I ACTGG 2 cut(s) 1185, 1331
Bse21I CCTNAGG 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 499
BseGI GGATG 3 cut(s) 85, 196, 1447
BseLI CCNNNNNNNGG 2 cut(s) 1025, 1144
BseMII CTCAG 8 cut(s) 375, 429, 468, 714, 719, 986, 1107, 1185
BseNI ACTGG 2 cut(s) 1185, 1331
BseRI GAGGAG 5 cut(s) 59, 62, 386, 740, 1302
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 320
Bsh1285I CGRYCG 1 cut(s) 1168
BshNI GGYRCC 1 cut(s) 1111
BsiEI CGRYCG 1 cut(s) 1168
BslFI GGGAC 1 cut(s) 1173
BslI CCNNNNNNNGG 2 cut(s) 1025, 1144
BsmAI GTCTC 4 cut(s) 44, 584, 863, 906
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 1173
Bso31I GGTCTC 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
Bsp1720I GCTNAGC 1 cut(s) 361
BspACI CCGC 3 cut(s) 5, 88, 892
BspCNI CTCAG 8 cut(s) 374, 430, 469, 715, 718, 985, 1108, 1186
BspLI GGNNCC 4 cut(s) 30, 177, 471, 1113
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 1099
BspPI GGATC 5 cut(s) 408, 451, 599, 656, 902
BspT107I GGYRCC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 863
BsrI ACTGG 2 cut(s) 1185, 1331
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
BssT1I CCWWGG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 944, 1028, 1460
Bst6I CTCTTC 3 cut(s) 142, 732, 1377
BstAFI CTTAAG 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 1283
BstC8I GCNNGC 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 3 cut(s) 85, 196, 1447
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 196, 242
BstKTI GATC 7 cut(s) 403, 446, 580, 607, 664, 897, 1052
BstMAI GTCTC 4 cut(s) 44, 584, 863, 906
BstMBI GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
BstMCI CGRYCG 1 cut(s) 1168
BstMWI GCNNNNNNNGC 3 cut(s) 89, 191, 237
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 24, 390
BstX2I RGATCY 4 cut(s) 400, 443, 577, 661
BstYI RGATCY 4 cut(s) 400, 443, 577, 661
Bsu36I CCTNAGG 1 cut(s) 723
BtsCI GGATG 3 cut(s) 85, 196, 1447
BtsIMutI CAGTG 2 cut(s) 1191, 1465
BveI ACCTGC 1 cut(s) 1099
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 196, 242
Cfr13I GGNCC 2 cut(s) 749, 1290
Csp6I GTAC 2 cut(s) 143, 1024
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 2 cut(s) 329, 1258
CviQI GTAC 2 cut(s) 143, 1024
DpnI GATC 7 cut(s) 402, 445, 579, 606, 663, 896, 1051
DpnII GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
DriI GACNNNNNGTC 1 cut(s) 597
Eam1104I CTCTTC 3 cut(s) 142, 732, 1377
Eam1105I GACNNNNNGTC 1 cut(s) 597
EarI CTCTTC 3 cut(s) 142, 732, 1377
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 2 cut(s) 749, 1290
Eco57I CTGAAG 3 cut(s) 863, 978, 1374
Eco81I CCTNAGG 1 cut(s) 723
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoRI GAATTC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 332, 1261
FaqI GGGAC 1 cut(s) 1173
FatI CATG 2 cut(s) 328, 1257
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 3 cut(s) 92, 203, 1454
Fsp4HI GCNGC 1 cut(s) 309
FspAI RTGCGCAY 1 cut(s) 195
FspBI CTAG 3 cut(s) 357, 795, 1299
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 2 cut(s) 195, 241
GluI GCNGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 243
HhaI GCGC 2 cut(s) 196, 242
Hin1II CATG 2 cut(s) 332, 1261
Hin6I GCGC 2 cut(s) 194, 240
HinP1I GCGC 2 cut(s) 194, 240
HindIII AAGCTT 2 cut(s) 539, 1062
HphI GGTGA 4 cut(s) 257, 563, 1127, 1460
Hpy166II GTNNAC 5 cut(s) 554, 1024, 1031, 1280, 1293
Hpy188I TCNGA 7 cut(s) 121, 294, 400, 708, 919, 958, 1348
Hpy188III TCNNGA 6 cut(s) 602, 665, 685, 722, 882, 1169
Hpy8I GTNNAC 5 cut(s) 554, 1024, 1031, 1280, 1293
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 7 cut(s) 34, 230, 317, 370, 1166, 1225, 1281
HpyCH4III ACNGT 3 cut(s) 944, 1028, 1460
HpyCH4IV ACGT 2 cut(s) 1126, 1282
HpyCH4V TGCA 5 cut(s) 185, 395, 755, 826, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 191, 237
HpySE526I ACGT 2 cut(s) 1126, 1282
Hsp92II CATG 2 cut(s) 332, 1261
HspAI GCGC 2 cut(s) 194, 240
Kzo9I GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
LmnI GCTCC 5 cut(s) 34, 175, 458, 475, 1039
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 7 cut(s) 70, 181, 404, 813, 922, 1051, 1339
MaeI CTAG 3 cut(s) 357, 795, 1299
MaeII ACGT 2 cut(s) 1126, 1282
MaeIII GTNAC 2 cut(s) 808, 1270
MalI GATC 7 cut(s) 402, 445, 579, 606, 663, 896, 1051
MboI GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
MflI RGATCY 4 cut(s) 400, 443, 577, 661
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 632, 829, 1089
MlyI GAGTC 2 cut(s) 74, 380
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 5 cut(s) 297, 582, 696, 906, 1465
MslI CAYNNNNRTG 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 905
MwoI GCNNNNNNNGC 3 cut(s) 89, 191, 237
NdeII GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
NlaIII CATG 2 cut(s) 332, 1261
NlaIV GGNNCC 4 cut(s) 30, 177, 471, 1113
NsbI TGCGCA 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 1099
PfeI GAWTC 8 cut(s) 96, 122, 314, 332, 650, 914, 968, 1343
PkrI GCNGC 1 cut(s) 310
PleI GAGTC 2 cut(s) 73, 380
PpsI GAGTC 2 cut(s) 73, 380
Ppu21I YACGTR 1 cut(s) 1283
PsiI TTATAA 1 cut(s) 623
PspN4I GGNNCC 4 cut(s) 30, 177, 471, 1113
PspPI GGNCC 2 cut(s) 749, 1290
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 4 cut(s) 400, 443, 577, 661
RsaI GTAC 2 cut(s) 144, 1025
RsaNI GTAC 2 cut(s) 143, 1024
RseI CAYNNNNRTG 1 cut(s) 1256
SaqAI TTAA 5 cut(s) 297, 582, 696, 906, 1465
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 7 cut(s) 400, 443, 577, 604, 661, 894, 1049
Sau96I GGNCC 2 cut(s) 749, 1290
SchI GAGTC 2 cut(s) 74, 380
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 7 cut(s) 70, 181, 404, 813, 922, 1051, 1339
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 2 cut(s) 749, 1290
SmiMI CAYNNNNRTG 1 cut(s) 1256
SmlI CTYRAG 3 cut(s) 587, 905, 1244
SmoI CTYRAG 3 cut(s) 587, 905, 1244
SpeI ACTAGT 1 cut(s) 1298
Sse9I AATT 3 cut(s) 632, 829, 1089
SsiI CCGC 3 cut(s) 5, 88, 892
SspI AATATT 1 cut(s) 1267
SspMI CTAG 3 cut(s) 357, 795, 1299
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 3 cut(s) 944, 1028, 1460
TaiI ACGT 2 cut(s) 1129, 1285
TaqI TCGA 5 cut(s) 68, 335, 381, 562, 1168
TaqII GACCGA 1 cut(s) 1154
TasI AATT 3 cut(s) 632, 829, 1089
TfiI GAWTC 8 cut(s) 96, 122, 314, 332, 650, 914, 968, 1343
Tru1I TTAA 5 cut(s) 297, 582, 696, 906, 1465
Tru9I TTAA 5 cut(s) 297, 582, 696, 906, 1465
TscAI CASTG 2 cut(s) 1198, 1465
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 6 cut(s) 297, 345, 362, 504, 798, 978
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 2 cut(s) 1198, 1465
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 749, 1290
XagI CCTNNNNNAGG 1 cut(s) 1142
XapI RAATTY 1 cut(s) 829
XspI CTAG 3 cut(s) 357, 795, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.