FvH4_2g26711

Histone chaperone domain CHZ

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007419
Physical Location & Seq
Reverse (-)
21410080 .. 21415147
5068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26711.t1

Sequence Viewer

Length: 1473 bp
ATGGCGGATGTGGTGGAAGACAGCGAGGCTCCAATGAAGAAGGAGGAGGAGACGGGCGATATGGAGTCGAAGATTTTGGAAGCTATGAAGGCTCGAGTCCCACACTTCAAGGAACAATCGGATTCTTTGACCTTTGTGAATGTACGAAGAGTATTAGAGAAAGACTTGGGTTTAGAGCCATCTGCATTGGATGCGCACAAAGGATTTGTCAAGGAACATTTGTTAAAGTGCTTAGAAGGTGCTGGTGAGGACAATAACTCAAAGAGTTCTGGGCAGACTGATGAAAAAAGTCTGATTAAAGGTGAAGCAACAGGATCAACTGAAGGGCATCAGTCAAATAAAGATATGAAGGAAACTAGTTCAGCAGATGAGGAGAAAGTGGAAGATTCTCCTGCTTCAGAGCTTCTAACAGAGCATAAAACAGCCAAAGTGAAAGCTGAGGGATCTAAAAGCTCCAATAACAAGAAGGCTCCAACTGAGGCTATGATAAAATCAGCCCTTGGAAAGAGAGGTTCTTATATCAAAGCTAATATCGAGAAGCTTACTATGGGTGAACTTCGTCGAGTTTTAGAGAAAGATCTTAAACTTGACACATACAGTCTTGATCCGTTTAAGAAGTTTATAAATCAGCAATTAGACGAGGTTTTAGAATCTTGTGTAGATCCTGAACCTGTCAAAAATGTCAAGAAAAATGTAAAGAAACCTCAGAGAAAACCAACTCCTGAGGAGATAAGTGAAGAAAGCTCTGGTCCTGCAAATAGTGGAACTGATGAGGAAGAAGATGAAGTGAAACCTAGGAAAAAAAGTGTTACAAAAGGTAAGATGCAGAATTCTGATGGGCTGAAGAAACGGAAAAGCTTGGCAAAGGAGACCAACATCTCTGGAAAGAAGCGGATCAAGTCTCTTAAGGCAGATTCAGAGGAAAAAAGTGACGCAAAAGACAGTGAAAATGTGTCTGAAGATGAAGATTCTAAGTCATCTGCTGAAAAACCTGTGAAGAAGAAGGAAGTTTCAACACCTGCATATGGTAAACGGGTGGAGCATCTAAGATCAGTTATCAAAGCATGTGGAATGAGCGTTCCCCCCTCAATTTACAAGAAAGTCAAGCAGGTGCCCGAGAACAAACGTGAAGCTCAACTGATAAAGGAGTTAGAGGACATACTTGGTCGAGAAGGGTTATCTTCCAGTCCCACTGAGAAAGAAATCAAGGAAGTCAAAAAGAAAAAGGAGAAAGCTAAAGAGCTTGAAGGCATTGACATGAGCAATATTGTAACGAGTTCACGTAGAAGGTCCACGACTAGTTTTGTACCTCCTCCGAAGCCCAAAATACCTGTTGATAGTGATTCTGATGCTGGAGATACAGATGATGACAATGACAATGATGAGGAAGAGGATGAGGTTGAGGACGAGGATAATAGCAGTAGTGATGACAATCATAGTGATAAAGATGATGGCGATGATGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHZ

Protein Analysis

491

Amino Acids

54.24

Weight (kDa)

5.13

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHZ PF09649 410 - 442 1.2e-09 Histone chaperone domain CHZ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 623
AarI CACCTGC 2 cut(s) 1027, 1099
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 2 cut(s) 1027, 1099
AccB1I GGYRCC 1 cut(s) 1111
AciI CCGC 2 cut(s) 5, 892
AclWI GGATC 5 cut(s) 322, 451, 599, 656, 902
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 4 cut(s) 342, 381, 863, 978
AfaI GTAC 2 cut(s) 144, 1308
AfiI CCNNNNNNNGG 1 cut(s) 1025
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 3 cut(s) 109, 1014, 1247
AhlI ACTAGT 2 cut(s) 356, 1298
AloI GAACNNNNNNTCC 2 cut(s) 1062, 1094
Alw26I GTCTC 3 cut(s) 44, 863, 906
AlwI GGATC 5 cut(s) 322, 451, 599, 656, 902
Ama87I CYCGRG 2 cut(s) 93, 1115
ApoI RAATTY 1 cut(s) 829
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
AspA2I CCTAGG 1 cut(s) 794
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 749, 1290
AsuHPI GGTGA 3 cut(s) 257, 314, 563
AvaI CYCGRG 2 cut(s) 93, 1115
AvaII GGWCC 2 cut(s) 749, 1290
AvrII CCTAGG 1 cut(s) 794
AxyI CCTNAGG 1 cut(s) 723
BaeGI GKGCMC 1 cut(s) 1116
BanI GGYRCC 1 cut(s) 1111
BbsI GAAGAC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 438
BccI CCATC 3 cut(s) 187, 830, 1445
BcoDI GTCTC 3 cut(s) 44, 863, 906
BcuI ACTAGT 2 cut(s) 356, 1298
BfaI CTAG 3 cut(s) 357, 795, 1299
BfrI CTTAAG 1 cut(s) 905
BfuAI ACCTGC 2 cut(s) 1027, 1099
BglII AGATCT 1 cut(s) 577
BlnI CCTAGG 1 cut(s) 794
Bme18I GGWCC 2 cut(s) 749, 1290
BmeT110I CYCGRG 2 cut(s) 93, 1115
BmgT120I GGNCC 2 cut(s) 749, 1290
BmiI GGNNCC 3 cut(s) 30, 471, 1113
BmsI GCATC 5 cut(s) 181, 337, 813, 1051, 1339
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 1374
Bpu10I CCTNAGC 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 1283
BsaBI GATNNNNATC 1 cut(s) 1431
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 499, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 1025
Bse1I ACTGG 1 cut(s) 1185
Bse21I CCTNAGG 1 cut(s) 723
Bse8I GATNNNNATC 1 cut(s) 1431
BseDI CCNNGG 2 cut(s) 499, 794
BseGI GGATG 3 cut(s) 13, 196, 1399
BseJI GATNNNNATC 1 cut(s) 1431
BseLI CCNNNNNNNGG 1 cut(s) 1025
BseMII CTCAG 5 cut(s) 429, 468, 714, 719, 1185
BseNI ACTGG 1 cut(s) 1185
BseRI GAGGAG 5 cut(s) 59, 62, 386, 740, 1302
BseSI GKGCMC 1 cut(s) 1116
BshNI GGYRCC 1 cut(s) 1111
BsiHKCI CYCGRG 2 cut(s) 93, 1115
BslFI GGGAC 2 cut(s) 83, 1173
BslI CCNNNNNNNGG 1 cut(s) 1025
BsmAI GTCTC 3 cut(s) 44, 863, 906
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 83, 1173
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 2 cut(s) 93, 1115
Bsp1286I GDGCHC 1 cut(s) 1116
Bsp143I GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
BspACI CCGC 2 cut(s) 5, 892
BspCNI CTCAG 5 cut(s) 430, 469, 715, 718, 1186
BspLI GGNNCC 3 cut(s) 30, 471, 1113
BspMI ACCTGC 2 cut(s) 1027, 1099
BspPI GGATC 5 cut(s) 322, 451, 599, 656, 902
BspT107I GGYRCC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 863
BsrI ACTGG 1 cut(s) 1185
BssECI CCNNGG 2 cut(s) 499, 794
BssMI GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
BssT1I CCWWGG 2 cut(s) 499, 794
Bst4CI ACNGT 3 cut(s) 599, 944, 1466
Bst6I CTCTTC 2 cut(s) 142, 1383
BstAFI CTTAAG 1 cut(s) 905
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 1283
BstDEI CTNAG 8 cut(s) 232, 438, 477, 705, 723, 972, 1046, 1194
BstF5I GGATG 3 cut(s) 13, 196, 1399
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 7 cut(s) 317, 446, 580, 607, 664, 897, 1052
BstMAI GTCTC 3 cut(s) 44, 863, 906
BstMBI GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
BstMWI GCNNNNNNNGC 2 cut(s) 89, 191
BstNSI RCATGY 1 cut(s) 1068
BstSLI GKGCMC 1 cut(s) 1116
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 3 cut(s) 443, 577, 661
BstYI RGATCY 3 cut(s) 443, 577, 661
Bsu36I CCTNAGG 1 cut(s) 723
BtsCI GGATG 3 cut(s) 13, 196, 1399
BtsIMutI CAGTG 3 cut(s) 949, 1191, 1471
BveI ACCTGC 2 cut(s) 1027, 1099
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 749, 1290
CseI GACGC 1 cut(s) 941
Csp6I GTAC 2 cut(s) 143, 1307
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 2 cut(s) 1065, 1258
CviQI GTAC 2 cut(s) 143, 1307
DdeI CTNAG 8 cut(s) 232, 438, 477, 705, 723, 972, 1046, 1194
DpnI GATC 7 cut(s) 316, 445, 579, 606, 663, 896, 1051
DpnII GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
Eam1104I CTCTTC 2 cut(s) 142, 1383
EarI CTCTTC 2 cut(s) 142, 1383
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 499, 794
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 2 cut(s) 749, 1290
Eco57I CTGAAG 4 cut(s) 342, 381, 863, 978
Eco81I CCTNAGG 1 cut(s) 723
Eco88I CYCGRG 2 cut(s) 93, 1115
EcoRI GAATTC 1 cut(s) 829
EcoT14I CCWWGG 2 cut(s) 499, 794
ErhI CCWWGG 2 cut(s) 499, 794
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 1068, 1261
FaqI GGGAC 2 cut(s) 83, 1173
FatI CATG 2 cut(s) 1064, 1257
FauNDI CATATG 1 cut(s) 1024
FokI GGATG 3 cut(s) 20, 203, 1406
FspAI RTGCGCAY 1 cut(s) 195
FspBI CTAG 3 cut(s) 357, 795, 1299
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 1374
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 196
Hin1II CATG 2 cut(s) 1068, 1261
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HindIII AAGCTT 2 cut(s) 539, 856
HinfI GANTC 8 cut(s) 65, 96, 122, 386, 650, 914, 968, 1343
HphI GGTGA 3 cut(s) 257, 314, 563
Hpy166II GTNNAC 4 cut(s) 554, 1031, 1280, 1293
Hpy188I TCNGA 9 cut(s) 121, 294, 400, 708, 835, 919, 958, 1317, 1348
Hpy188III TCNNGA 7 cut(s) 535, 602, 665, 685, 722, 882, 1169
Hpy8I GTNNAC 4 cut(s) 554, 1031, 1280, 1293
Hpy99I CGWCG 1 cut(s) 564
HpyCH4III ACNGT 3 cut(s) 599, 944, 1466
HpyCH4IV ACGT 2 cut(s) 1126, 1282
HpyCH4V TGCA 4 cut(s) 185, 755, 826, 1022
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 191
HpyF3I CTNAG 8 cut(s) 232, 438, 477, 705, 723, 972, 1046, 1194
HpySE526I ACGT 2 cut(s) 1126, 1282
Hsp92II CATG 2 cut(s) 1068, 1261
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
LmnI GCTCC 4 cut(s) 34, 458, 475, 1039
LweI GCATC 5 cut(s) 181, 337, 813, 1051, 1339
MaeI CTAG 3 cut(s) 357, 795, 1299
MaeII ACGT 2 cut(s) 1126, 1282
MaeIII GTNAC 3 cut(s) 808, 929, 1270
MalI GATC 7 cut(s) 316, 445, 579, 606, 663, 896, 1051
MboI GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
MflI RGATCY 3 cut(s) 443, 577, 661
MhlI GDGCHC 1 cut(s) 1116
MluCI AATT 3 cut(s) 632, 829, 1089
MlyI GAGTC 2 cut(s) 74, 105
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 6 cut(s) 224, 297, 582, 612, 906, 1471
MslI CAYNNNNRTG 1 cut(s) 1256
MspCI CTTAAG 1 cut(s) 905
MwoI GCNNNNNNNGC 2 cut(s) 89, 191
NdeI CATATG 1 cut(s) 1024
NdeII GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
NlaIII CATG 2 cut(s) 1068, 1261
NlaIV GGNNCC 3 cut(s) 30, 471, 1113
NmuCI GTSAC 1 cut(s) 929
NsbI TGCGCA 1 cut(s) 195
NspI RCATGY 1 cut(s) 1068
PaeR7I CTCGAG 1 cut(s) 93
PaqCI CACCTGC 2 cut(s) 1027, 1099
PfeI GAWTC 6 cut(s) 122, 386, 650, 914, 968, 1343
PleI GAGTC 2 cut(s) 73, 104
PpsI GAGTC 2 cut(s) 73, 104
Ppu21I YACGTR 1 cut(s) 1283
PsiI TTATAA 1 cut(s) 623
PspN4I GGNNCC 3 cut(s) 30, 471, 1113
PspPI GGNCC 2 cut(s) 749, 1290
PspXI VCTCGAGB 1 cut(s) 93
PsuI RGATCY 3 cut(s) 443, 577, 661
RsaI GTAC 2 cut(s) 144, 1308
RsaNI GTAC 2 cut(s) 143, 1307
RseI CAYNNNNRTG 1 cut(s) 1256
SaqAI TTAA 6 cut(s) 224, 297, 582, 612, 906, 1471
Sau3AI GATC 7 cut(s) 314, 443, 577, 604, 661, 894, 1049
Sau96I GGNCC 2 cut(s) 749, 1290
SchI GAGTC 2 cut(s) 74, 105
SduI GDGCHC 1 cut(s) 1116
SfaNI GCATC 5 cut(s) 181, 337, 813, 1051, 1339
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 2 cut(s) 749, 1290
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 1256
SmlI CTYRAG 2 cut(s) 93, 905
SmoI CTYRAG 2 cut(s) 93, 905
SpeI ACTAGT 2 cut(s) 356, 1298
Sse9I AATT 3 cut(s) 632, 829, 1089
SsiI CCGC 2 cut(s) 5, 892
SspI AATATT 1 cut(s) 1267
SspMI CTAG 3 cut(s) 357, 795, 1299
StyI CCWWGG 2 cut(s) 499, 794
TaaI ACNGT 3 cut(s) 599, 944, 1466
TaiI ACGT 2 cut(s) 1129, 1285
TaqI TCGA 5 cut(s) 68, 94, 534, 562, 1168
TasI AATT 3 cut(s) 632, 829, 1089
TfiI GAWTC 6 cut(s) 122, 386, 650, 914, 968, 1343
Tru1I TTAA 6 cut(s) 224, 297, 582, 612, 906, 1471
Tru9I TTAA 6 cut(s) 224, 297, 582, 612, 906, 1471
TscAI CASTG 3 cut(s) 949, 1198, 1471
TseFI GTSAC 1 cut(s) 929
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 6 cut(s) 50, 101, 297, 362, 798, 978
TspGWI ACGGA 2 cut(s) 597, 865
TspRI CASTG 3 cut(s) 949, 1198, 1471
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 2 cut(s) 749, 1290
XapI RAATTY 1 cut(s) 829
XceI RCATGY 1 cut(s) 1068
XhoI CTCGAG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 794
XspI CTAG 3 cut(s) 357, 795, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.