Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

17435525 .. 17438490

Gene Structure 2966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47510.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCGACAATGGGGAATAAGAATTCGATGTGTGGGTTAAAAAGGTTTCCGAACTACAAGAAGTCTCCGATCGGTTCATTTGCGAAAAACTCATCATCTCACGACGGTATTAAAACAATCGAAGCTGTTAACAGTTGCAGTTTTTCTAGAAAAGCAGATCTTTGCATCCGTATCATCACATGGAACATGAATGGAAATGTTTCGTATGAGGATTTAGTTGAGCTTGTTGGCAAAGAAAGGAAGTTCGATTTGCTTGTCGTTGGCTTGCAAGAAGCTCCCAAAGCAAACGTTGATCAACTTTTGCAGACAGCTTCATCTCCAACTCACGAGCTTCTTGGGAAGGCGAAATTGCAATCGGTCCAGTTATATTTGTTTGGGCCAAAGAATTCACATACATTAGTAAAAGAATTAAAGGCAGAGAGATATTCGGTAGGAGGATGTGGAGGTTTAATAGGAAGAAAAAAAGGAGCCGTGGCTATTCGTATTAACTACGATGACATCAAAATGGTTTTTATCTCTTGCCATCTCTCTGCTCATGCAAAAAAAGTGGATCAAAGAAATACGGAGTTAAGACACATAGCAAATTCACTATTACCAAGAGACAAAAGGAAACGTGACCTTACTGTTTGGCTAGGAGATCTAAATTACAGGATCCAAGATGTCTCTAACCATCCTGTTCGATCTCTTATCCAAAACCATCTTCAATCTGTTCTTGTGAGTAAAGATCAACTCTTGCAAGAAGCGGAGAGAGGCGAAATATTCAAAGGTTACTCTGAAGGAACTTTAGGGTTTAAACCAACCTACAAGTACAATGTAGGAAGCAGCGACTATGATACAAGCCATAAGATCAGGGTTCCAGCTTGGACAGATAGGATCTTATTCAAGATCCAAGATACTGATAATATTCAAGCAACTCTTCACTCTTATGATTCCATAGACCAAGTATATGGTTCTGATCATAAGCCTGTCAAAGCGGATCTTTGCTTGAAGTGGGTCAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

334

Amino Acids

37.58

Weight (kDa)

9.35

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	2 - 263	4e-69	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	743, 974
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	6 cut(s)	558, 646, 659, 880, 881, 984
AcsI	RAATTY	3 cut(s)	22, 385, 583
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	704, 763, 883, 908, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	684, 716
AluBI	AGCT	6 cut(s)	125, 223, 275, 311, 331, 860
AluI	AGCT	6 cut(s)	125, 223, 275, 311, 331, 860
Alw26I	GTCTC	3 cut(s)	69, 594, 667
AlwI	GGATC	6 cut(s)	558, 646, 659, 880, 881, 984
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	3 cut(s)	22, 385, 583
Asp700I	GAANNNNTTC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	358, 377
AvaII	GGWCC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	834
BccI	CCATC	3 cut(s)	531, 678, 705
BceAI	ACGGC	1 cut(s)	455
BclI	TGATCA	2 cut(s)	292, 955
BcoDI	GTCTC	3 cut(s)	69, 594, 667
BfaI	CTAG	2 cut(s)	147, 632
BglII	AGATCT	2 cut(s)	157, 637
BisI	GCNGC	1 cut(s)	823
BlsI	GCNGC	1 cut(s)	824
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	358, 377
BmiI	GGNNCC	3 cut(s)	469, 653, 855
BmsI	GCATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	165, 443, 670
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	834
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	69, 594, 667
BsnI	GGCC	1 cut(s)	379
BspACI	CCGC	2 cut(s)	743, 974
BspANI	GGCC	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	469, 653, 855
BspPI	GGATC	6 cut(s)	558, 646, 659, 880, 881, 984
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	4 cut(s)	107, 134, 625, 1001
Bst6I	CTCTTC	1 cut(s)	921
BstC8I	GCNNGC	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	165, 443, 670
BstMAI	GTCTC	3 cut(s)	69, 594, 667
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	834
BstX2I	RGATCY	6 cut(s)	157, 637, 651, 873, 885, 976
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	6 cut(s)	157, 637, 651, 873, 885, 976
BsuRI	GGCC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	3 cut(s)	165, 443, 670
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	358, 377
Csp6I	GTAC	1 cut(s)	808
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	3 cut(s)	180, 187, 536
CviQI	GTAC	1 cut(s)	808
DraI	TTTAAA	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	921
EarI	CTCTTC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	795
EcoRI	GAATTC	2 cut(s)	22, 385
FaeI	CATG	3 cut(s)	183, 190, 539
FalI	AAGNNNNNCTT	6 cut(s)	144, 176, 900, 932, 963, 995
FatI	CATG	3 cut(s)	179, 186, 535
FbaI	TGATCA	2 cut(s)	292, 955
Fnu4HI	GCNGC	1 cut(s)	823
FokI	GGATG	3 cut(s)	152, 450, 657
Fsp4HI	GCNGC	1 cut(s)	823
FspBI	CTAG	2 cut(s)	147, 632
GluI	GCNGC	1 cut(s)	823
HaeIII	GGCC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	183, 190, 539
HincII	GTYRAC	2 cut(s)	130, 997
HindII	GTYRAC	2 cut(s)	130, 997
HinfI	GANTC	1 cut(s)	929
HpaI	GTTAAC	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	130, 997
Hpy188I	TCNGA	4 cut(s)	51, 69, 775, 955
Hpy188III	TCNNGA	4 cut(s)	101, 147, 326, 883
Hpy8I	GTNNAC	2 cut(s)	130, 997
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	2 cut(s)	334, 770
HpyCH4III	ACNGT	4 cut(s)	107, 134, 625, 1001
HpyCH4IV	ACGT	2 cut(s)	288, 613
HpyCH4V	TGCA	7 cut(s)	138, 165, 268, 304, 352, 539, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpySE526I	ACGT	2 cut(s)	288, 613
Hsp92II	CATG	3 cut(s)	183, 190, 539
Ksp22I	TGATCA	2 cut(s)	292, 955
KspAI	GTTAAC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	280, 467
LpnPI	CCDG	6 cut(s)	374, 634, 687, 835, 870, 978
Lsp1109I	GCAGC	1 cut(s)	834
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	147, 632
MaeII	ACGT	2 cut(s)	288, 613
MaeIII	GTNAC	2 cut(s)	614, 767
MboII	GAAGA	3 cut(s)	468, 692, 908
MflI	RGATCY	6 cut(s)	157, 637, 651, 873, 885, 976
MluCI	AATT	6 cut(s)	22, 347, 385, 407, 583, 643
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	4 cut(s)	202, 428, 437, 743
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	9 cut(s)	38, 111, 129, 410, 449, 486, 569, 792, 1003
MslI	CAYNNNNRTG	2 cut(s)	503, 924
MssI	GTTTAAAC	1 cut(s)	793
MwoI	GCNNNNNNNGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	183, 190, 539
NlaIV	GGNNCC	3 cut(s)	469, 653, 855
NmuCI	GTSAC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	929
PkrI	GCNGC	1 cut(s)	824
Ple19I	CGATCG	1 cut(s)	72
PmeI	GTTTAAAC	1 cut(s)	793
Psp1406I	AACGTT	1 cut(s)	288
PspN4I	GGNNCC	3 cut(s)	469, 653, 855
PspPI	GGNCC	2 cut(s)	358, 377
PsuI	RGATCY	6 cut(s)	157, 637, 651, 873, 885, 976
PvuI	CGATCG	1 cut(s)	72
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
RseI	CAYNNNNRTG	2 cut(s)	503, 924
SaqAI	TTAA	9 cut(s)	38, 111, 129, 410, 449, 486, 569, 792, 1003
SatI	GCNGC	1 cut(s)	823
Sau96I	GGNCC	2 cut(s)	358, 377
SfaNI	GCATC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	503, 924
Sse9I	AATT	6 cut(s)	22, 347, 385, 407, 583, 643
SsiI	CCGC	2 cut(s)	743, 974
SspI	AATATT	2 cut(s)	759, 904
SspMI	CTAG	2 cut(s)	147, 632
TaaI	ACNGT	4 cut(s)	107, 134, 625, 1001
TaiI	ACGT	2 cut(s)	291, 616
TaqI	TCGA	4 cut(s)	26, 120, 246, 679
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	6 cut(s)	22, 347, 385, 407, 583, 643
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	1 cut(s)	929
Tru1I	TTAA	9 cut(s)	38, 111, 129, 410, 449, 486, 569, 792, 1003
Tru9I	TTAA	9 cut(s)	38, 111, 129, 410, 449, 486, 569, 792, 1003
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	66, 203, 303
TspGWI	ACGGA	2 cut(s)	158, 578
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	3 cut(s)	22, 385, 583
XbaI	TCTAGA	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	2 cut(s)	147, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.