Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

2743216 .. 2745494

Gene Structure 2279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1037300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTTGTTAAGGCGGAAAACAATGGACAGCCAGGGTGCAACGACGTCGCATGAAGGAATCAAGACTGTGAGAGTAGATAATCGTTGTGATTTCTCGAGCTACTCAGATCTTTGTGTTTCCGTTGTCACCTGGAACATGAATGGTCAGGTCTGTTACGAAGATTTGGCGGAGCTGGTTGGAAACAGCCGGAAGTCTGATCTTCTGGTAGTAGGTCTTCAGGAGGTGCCCCGTAAGAATATTTCACGACTTTTAAAGGCAGCGCTGCTTGACTCCCACATCTTGTTAGGAAAAGCCATCATGCAATCTATTCACCTCTACGTGTTTGGGACAAAGGACTCTGATTTGTTCATCAGAGAATTGAAGAGGGATAAGCGATCGTTAGGAGGTTTTGGAGGATTACTTAGGAGAAAGAAAGGCGCTGTGGGAATCCACCTTAACTACAAAGGCATTCCTATGGTGTTCATCTCTTGCCATCTCTCTGCTCATGCTCACAACGTGGAGAAAAGGAACTCTGAATTTAGAAACGTATCAGAATCTCTTTTCTTCGGGAAGTTGAATCCTTATGCGAAACCTCCCCAAATCACTGTTTGGTTGGGAGATCTCAACTACCGAATACAAGGAATCGACTCCTACCCGGCAAGAAACCTAATCAACAATGATCTCCAGAGACTACTCACTTGCAACGACCAACTGTTACAAGAGGCTGGGAGAGGACAGATCTTCGAAGGTTATAGTGAGGGCACGTTAACGTTCAAGCCCACATATAAATATGACATTGGAAGTAGCAACTATGATACAAGTTACAAGGTGAGAGTGCCCTCGTGGACCGACCGGATTTTGTTCAAGACGCAAGACTCCGACGAAATCAAGGCAACTTTGCATTCCTACTGGTCAATGGACGACATTCATAGTTCTGATCATAAGCCAGTGAAAGCTCATATTTGTTTAAAACTTAGCAAACCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

324

Amino Acids

36.6

Weight (kDa)

9.22

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	43 - 314	6.2e-68	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	2 cut(s)	16, 170
AclI	AACGTT	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	499
AfeI	AGCGCT	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	364, 559, 757, 847
AjnI	CCWGG	2 cut(s)	33, 131
AluBI	AGCT	3 cut(s)	102, 175, 938
AluI	AGCT	3 cut(s)	102, 175, 938
Alw26I	GTCTC	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	260, 265
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	2 cut(s)	265, 422
AspS9I	GGNCC	1 cut(s)	828
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	121, 305, 823
AsuII	TTCGAA	1 cut(s)	726
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	828
BaeGI	GKGCMC	3 cut(s)	231, 746, 822
BanI	GGYRCC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BauI	CACGAG	1 cut(s)	823
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	252, 272
BccI	CCATC	2 cut(s)	305, 483
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciT130I	CCWGG	2 cut(s)	35, 133
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	664
BfoI	RGCGCY	2 cut(s)	266, 423
BglII	AGATCT	3 cut(s)	109, 601, 720
BisI	GCNGC	2 cut(s)	261, 266
BlsI	GCNGC	2 cut(s)	262, 267
Bme1390I	CCNGG	3 cut(s)	35, 133, 638
Bme18I	GGWCC	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	828
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	35, 133, 638
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	834
Bse1I	ACTGG	2 cut(s)	896, 929
BseBI	CCWGG	2 cut(s)	35, 133
BseDI	CCNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	896, 929
BseSI	GKGCMC	3 cut(s)	231, 746, 822
BseXI	GCAGC	2 cut(s)	252, 272
BseYI	CCCAGC	1 cut(s)	707
Bsh1285I	CGRYCG	2 cut(s)	380, 835
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	2 cut(s)	380, 835
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	190, 638, 835
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	2 cut(s)	450, 883
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	3 cut(s)	231, 746, 822
Bsp143I	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
BspACI	CCGC	2 cut(s)	16, 170
BspCNI	CTCAG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	896, 929
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	1 cut(s)	823
Bst2BI	CACGAG	1 cut(s)	823
Bst2UI	CCWGG	2 cut(s)	35, 133
Bst4CI	ACNGT	3 cut(s)	70, 589, 696
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	106, 404, 956
BstH2I	RGCGCY	2 cut(s)	266, 423
BstHHI	GCGC	2 cut(s)	265, 422
BstKTI	GATC	7 cut(s)	112, 202, 380, 604, 664, 723, 922
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
BstMCI	CGRYCG	2 cut(s)	380, 835
BstNI	CCWGG	2 cut(s)	35, 133
BstSCI	CCNGG	3 cut(s)	33, 131, 636
BstSLI	GKGCMC	3 cut(s)	231, 746, 822
BstV1I	GCAGC	2 cut(s)	252, 272
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	3 cut(s)	109, 601, 720
BstYI	RGATCY	3 cut(s)	109, 601, 720
BtsIMutI	CAGTG	2 cut(s)	585, 936
CfoI	GCGC	2 cut(s)	265, 422
Cfr13I	GGNCC	1 cut(s)	828
CseI	GACGC	1 cut(s)	859
CviAII	CATG	4 cut(s)	53, 139, 301, 488
CviJI	RGCY	9 cut(s)	33, 102, 175, 189, 296, 707, 760, 928, 938
CviKI_1	RGCY	9 cut(s)	33, 102, 175, 189, 296, 707, 760, 928, 938
DdeI	CTNAG	3 cut(s)	106, 404, 956
DpnI	GATC	7 cut(s)	111, 201, 379, 603, 663, 722, 921
DpnII	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
DraI	TTTAAA	2 cut(s)	255, 951
DraIII	CACNNNGTG	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	2 cut(s)	31, 185
Eco47I	GGWCC	1 cut(s)	828
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	33, 131
FaeI	CATG	4 cut(s)	56, 142, 304, 491
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	52, 138, 300, 487
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	2 cut(s)	261, 266
Fsp4HI	GCNGC	2 cut(s)	261, 266
GlaI	GCGC	2 cut(s)	264, 421
GluI	GCNGC	2 cut(s)	261, 266
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	2 cut(s)	266, 423
HapII	CCGG	3 cut(s)	190, 638, 835
HgaI	GACGC	1 cut(s)	859
HhaI	GCGC	2 cut(s)	265, 422
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	4 cut(s)	56, 142, 304, 491
Hin6I	GCGC	2 cut(s)	263, 420
HinP1I	GCGC	2 cut(s)	263, 420
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	9 cut(s)	60, 272, 338, 429, 536, 559, 624, 629, 857
HpaI	GTTAAC	1 cut(s)	750
HpaII	CCGG	3 cut(s)	190, 638, 835
HphI	GGTGA	3 cut(s)	121, 305, 823
Hpy166II	GTNNAC	2 cut(s)	750, 828
Hpy188I	TCNGA	8 cut(s)	109, 199, 343, 356, 517, 535, 862, 919
Hpy188III	TCNNGA	7 cut(s)	64, 97, 221, 246, 550, 667, 847
Hpy8I	GTNNAC	2 cut(s)	750, 828
Hpy99I	CGWCG	3 cut(s)	49, 52, 866
HpyAV	CCTTC	2 cut(s)	50, 722
HpyCH4III	ACNGT	3 cut(s)	70, 589, 696
HpyCH4IV	ACGT	6 cut(s)	47, 321, 498, 528, 746, 752
HpyCH4V	TGCA	4 cut(s)	41, 304, 684, 883
HpyF3I	CTNAG	3 cut(s)	106, 404, 956
HpySE526I	ACGT	6 cut(s)	47, 321, 498, 528, 746, 752
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	56, 142, 304, 491
HspAI	GCGC	2 cut(s)	263, 420
Ksp22I	TGATCA	1 cut(s)	919
KspAI	GTTAAC	1 cut(s)	750
Kzo9I	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	252, 272
MaeII	ACGT	6 cut(s)	47, 321, 498, 528, 746, 752
MaeIII	GTNAC	4 cut(s)	127, 155, 696, 803
MalI	GATC	7 cut(s)	111, 201, 379, 603, 663, 722, 921
MboI	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
MboII	GAAGA	6 cut(s)	173, 194, 209, 376, 538, 715
MflI	RGATCY	3 cut(s)	109, 601, 720
MhlI	GDGCHC	3 cut(s)	231, 746, 822
MluCI	AATT	2 cut(s)	359, 518
MlyI	GAGTC	4 cut(s)	266, 332, 623, 851
MmeI	TCCRAC	2 cut(s)	160, 885
MseI	TTAA	5 cut(s)	11, 254, 438, 749, 950
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	3 cut(s)	190, 638, 835
MspR9I	CCNGG	3 cut(s)	35, 133, 638
Mva1269I	GAATGC	2 cut(s)	450, 883
MvaI	CCWGG	2 cut(s)	35, 133
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
NlaIII	CATG	4 cut(s)	56, 142, 304, 491
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	97
PctI	GAATGC	2 cut(s)	450, 883
PfeI	GAWTC	5 cut(s)	60, 429, 536, 559, 624
PkrI	GCNGC	2 cut(s)	262, 267
Ple19I	CGATCG	1 cut(s)	380
PleI	GAGTC	4 cut(s)	266, 332, 623, 851
PpsI	GAGTC	4 cut(s)	266, 332, 623, 851
Ppu21I	YACGTR	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	33, 131
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	33, 131
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	828
PsuI	RGATCY	3 cut(s)	109, 601, 720
PvuI	CGATCG	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	5 cut(s)	11, 254, 438, 749, 950
SatI	GCNGC	2 cut(s)	261, 266
Sau3AI	GATC	7 cut(s)	109, 199, 377, 601, 661, 720, 919
Sau96I	GGNCC	1 cut(s)	828
SchI	GAGTC	4 cut(s)	266, 332, 623, 851
ScrFI	CCNGG	3 cut(s)	35, 133, 638
SduI	GDGCHC	3 cut(s)	231, 746, 822
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	726
SinI	GGWCC	1 cut(s)	828
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	359, 518
SsiI	CCGC	2 cut(s)	16, 170
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	3 cut(s)	33, 131, 636
TaaI	ACNGT	3 cut(s)	70, 589, 696
TaiI	ACGT	6 cut(s)	50, 324, 501, 531, 749, 755
TaqI	TCGA	3 cut(s)	98, 627, 726
TaqII	GACCGA	1 cut(s)	845
TasI	AATT	2 cut(s)	359, 518
TfiI	GAWTC	5 cut(s)	60, 429, 536, 559, 624
Tru1I	TTAA	5 cut(s)	11, 254, 438, 749, 950
Tru9I	TTAA	5 cut(s)	11, 254, 438, 749, 950
TscAI	CASTG	2 cut(s)	592, 936
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	260, 265
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	5 cut(s)	69, 155, 340, 454, 899
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	592, 936
VpaK11BI	GGWCC	1 cut(s)	828
XapI	RAATTY	1 cut(s)	518
XhoI	CTCGAG	1 cut(s)	97
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.