Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Forward (+)

60483892 .. 60485658

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG407800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGAAATTCCAGCTCCATTAAGCATAGCAGTGAAGGAGGAAGATTGAAGCACTCGAAGAGAAAGCACAAGCGGCTGGGTGTAACTTGTTCTGCAGGTTATGATCATGATTATCATGAAGGAATAAAGAGTGTAAGAGCGGACAACCACGTTTGTGATTTCTCTCCTTATTCGGATCTATGCATTTGCGTGGTTACTTGGAACATGAATGGTCAAGTGAGTTACGGAGATTTGGAGGAGATGGTTGCCGGGAACAACCGCAAGTTCGATCTTCTGGTTATCGGTCTGCAAGAAGTGCCCCGGAAAAATATTTCACGACTGTTGCAGACAGCGCTTCTTGACTCTCACATCTTGTTAGGAAAAGCCACTATGCAATCAATACACCTGTATATCTTTGGGCCAAAGGGCTCAGATTTCTTCCTCAGAGAAATGAAGATCGATAAGGTTTCAGTAGGGGGATGTGGAGGGCTAATTGGGAGAAAGAAAGGAGCTGTGGGAATCCGCATCAACTATAAAGGCATTCCGATGGTCTTCATCTCTTGCCATCTCTCTGCTCATGCTCACAATGTGGGGAAGAGGAATTCAGAATACAAGAGCGTATCAGAATCTCTTTTTTCCAAGAACTTGAACCCTTTTGCTTCACCTCCCAAAATCATTGTTTGGTTGGGAGATCTCAACTATAGAATACAAGGGATTGAAACTCATTCCGTACGAAAACTGATAAACAAAGATCTTCACGGACTACTAACCAGCAATGACCAACTATTACAAGAGGCCGAAAGAGGAGAGATCTTCGAAGGATACCACGAGGGGACGATAACGTTCAAACCCACTTACAAATACGACGTTGGAAGTAGCAACTACGACACAAGTTATAAGGTGAGAGTGCCATCGTGGACCGATCGGATTCTGTTCAAGACCGAGGAAGGCATAGACGAGTTCCATGCGACACTACACTCTTACGAATCAATGGACGGAATTCACAGTTCAGATCATAAGCCAGTCAAAGCTCACATCTGTTTGAAACTAAACAAACCAAACCCATCATTAGCTTGTACAAATCAACTACGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

358

Amino Acids

40.12

Weight (kDa)

9.01

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	65 - 338	1.8e-71	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	4 cut(s)	73, 140, 259, 502
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	3 cut(s)	7, 580, 978
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	2 cut(s)	711, 1057
AfeI	AGCGCT	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	1069
AgsI	TTSAA	6 cut(s)	49, 628, 698, 826, 916, 1024
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	15, 491, 1010, 1052
AluI	AGCT	4 cut(s)	15, 491, 1010, 1052
AlwI	GGATC	1 cut(s)	183
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	398, 774
ApoI	RAATTY	3 cut(s)	7, 580, 978
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	398, 897
AsuC2I	CCSGG	2 cut(s)	250, 301
AsuHPI	GGTGA	2 cut(s)	633, 892
AsuII	TTCGAA	1 cut(s)	795
AvaII	GGWCC	1 cut(s)	897
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	523
BccI	CCATC	5 cut(s)	235, 520, 552, 898, 1051
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BciVI	GTATCC	1 cut(s)	794
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	250, 301
BfmI	CTRYAG	2 cut(s)	93, 679
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	794
BglII	AGATCT	3 cut(s)	670, 730, 789
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	250, 301
Bme18I	GGWCC	1 cut(s)	897
BmgT120I	GGNCC	2 cut(s)	398, 897
BmrFI	CCNGG	2 cut(s)	250, 301
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	523
Bpu14I	TTCGAA	1 cut(s)	795
BpuMI	CCSGG	2 cut(s)	250, 301
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	1070
BsaJI	CCNNGG	2 cut(s)	299, 921
Bse1I	ACTGG	1 cut(s)	1001
Bse3DI	GCAATG	1 cut(s)	760
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	299, 921
BseGI	GGATG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	423, 436
BseNI	ACTGG	1 cut(s)	1001
BseRI	GAGGAG	2 cut(s)	251, 798
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	904
BshFI	GGCC	2 cut(s)	400, 776
BshVI	ATCGAT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	249, 301
BsiWI	CGTACG	1 cut(s)	709
BslFI	GGGAC	1 cut(s)	826
BsmFI	GGGAC	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	400, 776
Bsp119I	TTCGAA	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	300, 410
Bsp1407I	TGTACA	1 cut(s)	1055
Bsp143I	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
BspACI	CCGC	4 cut(s)	73, 140, 259, 502
BspANI	GGCC	2 cut(s)	400, 776
BspCNI	CTCAG	2 cut(s)	422, 435
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	2 cut(s)	106, 115
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	183
BspT104I	TTCGAA	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	1055
BsrI	ACTGG	1 cut(s)	1001
BssECI	CCNNGG	2 cut(s)	299, 921
BssMI	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
BssSI	CACGAG	1 cut(s)	806
Bst2BI	CACGAG	1 cut(s)	806
Bst4CI	ACNGT	2 cut(s)	321, 986
Bst6I	CTCTTC	2 cut(s)	53, 569
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	1055
BstBAI	YACGTR	1 cut(s)	1070
BstBI	TTCGAA	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	409, 422
BstF5I	GGATG	1 cut(s)	464
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	9 cut(s)	106, 178, 271, 438, 673, 733, 792, 904, 994
BstMBI	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
BstMCI	CGRYCG	1 cut(s)	904
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
BstSCI	CCNGG	2 cut(s)	248, 299
BstSFI	CTRYAG	2 cut(s)	93, 679
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	523
BstX2I	RGATCY	4 cut(s)	175, 670, 730, 789
BstYI	RGATCY	4 cut(s)	175, 670, 730, 789
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	400, 776
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	464
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	86
CciI	TCATGA	2 cut(s)	106, 115
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	398, 897
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	710, 1056
CviAII	CATG	5 cut(s)	107, 116, 205, 557, 944
CviQI	GTAC	2 cut(s)	710, 1056
DdeI	CTNAG	2 cut(s)	409, 422
DpnI	GATC	9 cut(s)	105, 177, 270, 437, 672, 732, 791, 903, 993
DpnII	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
DraIII	CACNNNGTG	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	53, 569
EarI	CTCTTC	2 cut(s)	53, 569
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	897
Eco47III	AGCGCT	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	580, 978
EcoT22I	ATGCAT	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	5 cut(s)	110, 119, 208, 560, 947
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	5 cut(s)	106, 115, 204, 556, 943
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	74
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	400, 776
HapII	CCGG	2 cut(s)	249, 301
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	110, 119, 208, 560, 947
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	5 cut(s)	341, 498, 605, 907, 965
HpaII	CCGG	2 cut(s)	249, 301
HphI	GGTGA	2 cut(s)	633, 892
Hpy166II	GTNNAC	1 cut(s)	897
Hpy188I	TCNGA	8 cut(s)	175, 412, 425, 525, 586, 604, 906, 991
Hpy188III	TCNNGA	5 cut(s)	107, 116, 315, 338, 916
Hpy8I	GTNNAC	1 cut(s)	897
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	4 cut(s)	29, 113, 791, 920
HpyCH4III	ACNGT	2 cut(s)	321, 986
HpyCH4IV	ACGT	4 cut(s)	150, 821, 846, 1069
HpyCH4V	TGCA	5 cut(s)	95, 183, 289, 325, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
HpyF3I	CTNAG	2 cut(s)	409, 422
HpySE526I	ACGT	4 cut(s)	150, 821, 846, 1069
Hsp92II	CATG	5 cut(s)	110, 119, 208, 560, 947
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
LmnI	GCTCC	2 cut(s)	20, 488
LpnPI	CCDG	9 cut(s)	25, 62, 81, 260, 262, 314, 398, 763, 1014
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	4 cut(s)	150, 821, 846, 1069
MaeIII	GTNAC	3 cut(s)	82, 193, 221
MalI	GATC	9 cut(s)	105, 177, 270, 437, 672, 732, 791, 903, 993
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
MboII	GAAGA	9 cut(s)	54, 70, 263, 409, 445, 523, 586, 725, 784
MflI	RGATCY	4 cut(s)	175, 670, 730, 789
MhlI	GDGCHC	2 cut(s)	300, 410
MluCI	AATT	4 cut(s)	7, 471, 580, 978
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	829
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	2 cut(s)	21, 1075
MslI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
MspI	CCGG	2 cut(s)	249, 301
MspR9I	CCNGG	2 cut(s)	250, 301
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
NciI	CCSGG	2 cut(s)	250, 301
NdeII	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
NlaIII	CATG	5 cut(s)	110, 119, 208, 560, 947
NsiI	ATGCAT	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	795
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	2 cut(s)	106, 115
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	4 cut(s)	498, 605, 907, 965
Pfl23II	CGTACG	1 cut(s)	709
PkrI	GCNGC	1 cut(s)	75
Ple19I	CGATCG	1 cut(s)	904
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	1070
PsiI	TTATAA	1 cut(s)	876
Psp1406I	AACGTT	1 cut(s)	821
PspFI	CCCAGC	1 cut(s)	76
PspLI	CGTACG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	398, 897
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	4 cut(s)	175, 670, 730, 789
PvuI	CGATCG	1 cut(s)	904
RsaI	GTAC	2 cut(s)	711, 1057
RsaNI	GTAC	2 cut(s)	710, 1056
RseI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
SaqAI	TTAA	2 cut(s)	21, 1075
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	9 cut(s)	103, 175, 268, 435, 670, 730, 789, 901, 991
Sau96I	GGNCC	2 cut(s)	398, 897
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	250, 301
SduI	GDGCHC	2 cut(s)	300, 410
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	2 cut(s)	93, 679
SfuI	TTCGAA	1 cut(s)	795
SinI	GGWCC	1 cut(s)	897
SmiMI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
Sse9I	AATT	4 cut(s)	7, 471, 580, 978
SsiI	CCGC	4 cut(s)	73, 140, 259, 502
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	248, 299
TaaI	ACNGT	2 cut(s)	321, 986
TaiI	ACGT	4 cut(s)	153, 824, 849, 1072
TaqI	TCGA	4 cut(s)	56, 267, 438, 795
TaqII	GACCGA	3 cut(s)	272, 914, 935
TasI	AATT	4 cut(s)	7, 471, 580, 978
TatI	WGTACW	1 cut(s)	1055
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	4 cut(s)	498, 605, 907, 965
Tru1I	TTAA	2 cut(s)	21, 1075
Tru9I	TTAA	2 cut(s)	21, 1075
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	132, 221, 446, 523
TspGWI	ACGGA	4 cut(s)	240, 697, 753, 990
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	897
XapI	RAATTY	3 cut(s)	7, 580, 978
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.