Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Forward (+)

71591697 .. 71594766

Gene Structure 3070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGAAATTCCAGCTCCATTAAGCATAGCAGTGAAGGAGGAAGATTGAAGCACTCGAAGAGAAAGCACAACCGGCTGGGTGTAACTTGTTCTGCAGGTTATGATCATGATTATCATGAAGGAATAAAGAGTGTAAGAGCGGACAACCACGTTTGTGATTTCTCTCCTTATTCGGATCTATGCATTTGCGTGGTTACTTGGAACATGAATGGTCAAGTGAGTTACGGAGATTTGGAGGAGATGGTTGCCGGGAACAACCGCAAGTTCGATCTTCTGGTTATCGGTCTGCAAGAAGTGCCCCGGAAAAATATTTCACGACTGTTGCAGACAGCGCTTCTTGACTCTCACATCTTGTTAGGAAAAGCCACTATGCAATCAATACACCTGTATATCTTTGGGCCAAAGGGCTCAGATTTCTTCCTCAGAGAAATAAAGATCGATAAGGTTTCAGTAGGGGGATGTGGAGGGCTAATTGGGAGAAAGAAAGGAGCTGTGGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

167

Amino Acids

18.33

Weight (kDa)

9.13

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	65 - 166	4.6e-09	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	2 cut(s)	140, 259
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	49
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	15, 491
AluI	AGCT	2 cut(s)	15, 491
AlwI	GGATC	1 cut(s)	183
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	250, 301
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	410
BccI	CCATC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	250, 301
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	250, 301
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	250, 301
BpuMI	CCSGG	2 cut(s)	250, 301
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	464
BseMII	CTCAG	2 cut(s)	423, 436
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	3 cut(s)	73, 249, 301
BsnI	GGCC	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	300, 410
Bsp143I	GATC	4 cut(s)	103, 175, 268, 435
BspACI	CCGC	2 cut(s)	140, 259
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	422, 435
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	2 cut(s)	106, 115
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	103, 175, 268, 435
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	409, 422
BstF5I	GGATG	1 cut(s)	464
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	4 cut(s)	106, 178, 271, 438
BstMBI	GATC	4 cut(s)	103, 175, 268, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
BstSCI	CCNGG	2 cut(s)	248, 299
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	464
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	86
CciI	TCATGA	2 cut(s)	106, 115
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	438
CviAII	CATG	3 cut(s)	107, 116, 205
CviJI	RGCY	7 cut(s)	15, 76, 365, 400, 408, 469, 491
CviKI_1	RGCY	7 cut(s)	15, 76, 365, 400, 408, 469, 491
DdeI	CTNAG	2 cut(s)	409, 422
DpnI	GATC	4 cut(s)	105, 177, 270, 437
DpnII	GATC	4 cut(s)	103, 175, 268, 435
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	410
Eco47III	AGCGCT	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	3 cut(s)	110, 119, 208
FaiI	YATR	8 cut(s)	27, 102, 108, 117, 181, 206, 371, 390
FatI	CATG	3 cut(s)	106, 115, 204
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	410
GlaI	GCGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	3 cut(s)	73, 249, 301
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	110, 119, 208
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	3 cut(s)	73, 249, 301
Hpy188I	TCNGA	3 cut(s)	175, 412, 425
Hpy188III	TCNNGA	4 cut(s)	107, 116, 315, 338
HpyAV	CCTTC	2 cut(s)	29, 113
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	95, 183, 289, 325, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
HpyF3I	CTNAG	2 cut(s)	409, 422
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	110, 119, 208
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 175, 268, 435
LmnI	GCTCC	2 cut(s)	20, 488
LpnPI	CCDG	8 cut(s)	25, 62, 81, 86, 260, 262, 314, 398
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	82, 193, 221
MalI	GATC	4 cut(s)	105, 177, 270, 437
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	4 cut(s)	103, 175, 268, 435
MboII	GAAGA	4 cut(s)	54, 70, 263, 409
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	300, 410
MluCI	AATT	3 cut(s)	7, 471, 499
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	4 cut(s)	32, 229, 431, 458
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	3 cut(s)	30, 153, 188
MspI	CCGG	3 cut(s)	73, 249, 301
MspR9I	CCNGG	2 cut(s)	250, 301
MwoI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
NciI	CCSGG	2 cut(s)	250, 301
NdeII	GATC	4 cut(s)	103, 175, 268, 435
NlaIII	CATG	3 cut(s)	110, 119, 208
NsiI	ATGCAT	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	2 cut(s)	106, 115
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	3 cut(s)	30, 153, 188
SaqAI	TTAA	1 cut(s)	21
Sau3AI	GATC	4 cut(s)	103, 175, 268, 435
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	250, 301
SduI	GDGCHC	2 cut(s)	300, 410
SetI	ASST	6 cut(s)	17, 100, 153, 387, 447, 493
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	3 cut(s)	30, 153, 188
Sse9I	AATT	3 cut(s)	7, 471, 499
SsiI	CCGC	2 cut(s)	140, 259
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	248, 299
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	56, 267, 438
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	3 cut(s)	7, 471, 499
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	132, 221
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.