Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

28781905 .. 28784269

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40410.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGACCAGTATGGGAAATTCCAGCTCCAGTGAAGGAGGAGGATTCAAGAACTCTAACAGAAAGCACTACAAGCAGCTCGATTCTACTATTTCTGCAGGTTATGATCATGAAGGAATAAAGAGGGTTAAGGCAGACAAGTACGTCTGTGATTCCCCACCTTATTCCGATCTATGCATTTGCGTGATTACGTGGAACATGAACGGCCGGTTATGCTACCGAGATTTGATGATGGTTGCCCGGAACAACAGCAAGTTCGATCTTCTGGTTATCGGTCTGCAAGAAGTGCCCCGGAAACTGTTCGAACGACCGTTGCAGACAGCGCTTCTTGACTCTCACGTATTGTTGGGAGAAGCCACTATGCAATCAATACACCTGTATGTCTTTGGTGCAAAGGGCTCAGACTTGTTCCTCAGAGAAATGAAGATTGATAAGCTTTCATTTGGGGGATGTGGAGGACTAGTCGGAAGGAATAAAGGAGCTGTGGGAATCCGCATCAACTATAAAGGCATTCCAATGGTCTTCATCTCTGGCCATCTCTCTGCTCATGCTCGCAATGTGGGGAAGAGGAATTCCGAATTCAAGAGTGTATCAGAATCTTTTTTCTCCAAGGCCTTGAAAAAGGACCCTTATGCTTCACCTCCCAAAATCATCGTCTGGTTGGGAGATCTCAACTACCGAATACAAGGGATTGAAAATCATTCCGTACGAAATATGATAAACAAAGATCTCCACGGACTACTATCCAGCAATGACCAACTATTACAAGAAGCCGAGAGAGGAGAAATCTTCAAAGGATTCCGCGAGGGGACGTTAACCTTCAAACCGACTTACAAATACGACGTCGGAAGTAGCAACTACGACACAAGCTATAAGGTGCGAGTGCCGTCGTGGACCGACCGGATTCTGTTCAAGACGGAGGAGGATACAGACGACGAGTTCCATGCGACGCTACACTCATACGAATCCATGGACGAGATTCACAGTTCAGATCATAAACCAGTCAAAGCTCACATATGTTTGAAACTTAACAAATCACCAAACACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

350

Amino Acids

39.31

Weight (kDa)

8.92

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	62 - 244	2.9e-29	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	86
AccII	CGCG	1 cut(s)	801
AciI	CCGC	2 cut(s)	490, 799
AcoI	YGGCCR	2 cut(s)	202, 529
AcsI	RAATTY	3 cut(s)	16, 568, 575
AcyI	GRCGYC	1 cut(s)	840
AfaI	GTAC	2 cut(s)	140, 705
AfeI	AGCGCT	1 cut(s)	321
AgsI	TTSAA	8 cut(s)	46, 580, 616, 692, 790, 820, 910, 1021
AhlI	ACTAGT	1 cut(s)	457
AluBI	AGCT	6 cut(s)	24, 76, 433, 479, 867, 1007
AluI	AGCT	6 cut(s)	24, 76, 433, 479, 867, 1007
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	3 cut(s)	202, 529, 609
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	3 cut(s)	16, 568, 575
ArsI	GACNNNNNNTTYG	4 cut(s)	636, 668, 825, 857
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	622, 891
AsuC2I	CCSGG	2 cut(s)	238, 289
AsuHPI	GGTGA	2 cut(s)	627, 1026
AsuII	TTCGAA	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	622, 891
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	223, 540
BceAI	ACGGC	2 cut(s)	217, 868
BcgI	CGANNNNNNTGC	2 cut(s)	923, 957
BciVI	GTATCC	1 cut(s)	916
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	238, 289
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	916
BglII	AGATCT	2 cut(s)	664, 724
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	238, 289
Bme18I	GGWCC	2 cut(s)	622, 891
BmgT120I	GGNCC	2 cut(s)	622, 891
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	2 cut(s)	238, 289
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	238, 289
BsaAI	YACGTR	2 cut(s)	189, 337
BsaHI	GRCGYC	1 cut(s)	840
BsaJI	CCNNGG	4 cut(s)	287, 606, 730, 966
BsaWI	WCCGGW	1 cut(s)	897
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	3 cut(s)	6, 27, 998
Bse3DI	GCAATG	2 cut(s)	559, 754
BseDI	CCNNGG	4 cut(s)	287, 606, 730, 966
BseGI	GGATG	1 cut(s)	452
BseMI	GCAATG	2 cut(s)	559, 754
BseMII	CTCAG	2 cut(s)	411, 424
BseNI	ACTGG	3 cut(s)	6, 27, 998
BseRI	GAGGAG	3 cut(s)	51, 792, 932
BseSI	GKGCMC	1 cut(s)	288
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	801
Bsh1285I	CGRYCG	3 cut(s)	205, 308, 898
BshFI	GGCC	3 cut(s)	204, 531, 611
BsiEI	CGRYCG	3 cut(s)	205, 308, 898
BsiSI	CCGG	4 cut(s)	205, 238, 289, 898
BsiWI	CGTACG	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	820
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	204, 531, 611
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	288, 398
Bsp143I	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	2 cut(s)	490, 799
BspANI	GGCC	3 cut(s)	204, 531, 611
BspCNI	CTCAG	2 cut(s)	410, 423
BspFNI	CGCG	1 cut(s)	801
BspHI	TCATGA	2 cut(s)	106, 1046
BspLI	GGNNCC	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	559, 754
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	6, 27, 998
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	4 cut(s)	287, 606, 730, 966
BssMI	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
BssNI	GRCGYC	1 cut(s)	840
BssT1I	CCWWGG	2 cut(s)	606, 966
Bst4CI	ACNGT	3 cut(s)	297, 309, 983
Bst6I	CTCTTC	1 cut(s)	557
BstACI	GRCGYC	1 cut(s)	840
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstBAI	YACGTR	2 cut(s)	189, 337
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	397, 410
BstDSI	CCRYGG	2 cut(s)	730, 966
BstF5I	GGATG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	801
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	6 cut(s)	106, 169, 259, 667, 727, 991
BstMBI	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
BstMCI	CGRYCG	3 cut(s)	205, 308, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 210, 283, 319
BstSCI	CCNGG	2 cut(s)	236, 287
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	664, 724
BstYI	RGATCY	2 cut(s)	664, 724
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	204, 531, 611
BtgI	CCRYGG	2 cut(s)	730, 966
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	550
CciI	TCATGA	2 cut(s)	106, 1046
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	622, 891
CseI	GACGC	1 cut(s)	955
Csp6I	GTAC	2 cut(s)	139, 704
CviAII	CATG	6 cut(s)	107, 196, 545, 941, 967, 1047
CviQI	GTAC	2 cut(s)	139, 704
DdeI	CTNAG	2 cut(s)	397, 410
DpnI	GATC	6 cut(s)	105, 168, 258, 666, 726, 990
DpnII	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	2 cut(s)	202, 529
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	606, 966
Eco147I	AGGCCT	1 cut(s)	611
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	622, 891
Eco47III	AGCGCT	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRI	GAATTC	2 cut(s)	568, 575
EcoT14I	CCWWGG	2 cut(s)	606, 966
EcoT22I	ATGCAT	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	2 cut(s)	606, 966
FaeI	CATG	6 cut(s)	110, 199, 548, 944, 970, 1050
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	6 cut(s)	106, 195, 544, 940, 966, 1046
FauNDI	CATATG	1 cut(s)	1013
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	10
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	204, 531, 611
HapII	CCGG	4 cut(s)	205, 238, 289, 898
HgaI	GACGC	1 cut(s)	955
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	840
Hin1II	CATG	6 cut(s)	110, 199, 548, 944, 970, 1050
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	431
HpaI	GTTAAC	1 cut(s)	813
HpaII	CCGG	4 cut(s)	205, 238, 289, 898
HphI	GGTGA	2 cut(s)	627, 1026
Hpy166II	GTNNAC	2 cut(s)	813, 891
Hpy188I	TCNGA	8 cut(s)	166, 400, 413, 464, 574, 592, 845, 988
Hpy188III	TCNNGA	6 cut(s)	46, 107, 326, 580, 910, 1047
Hpy8I	GTNNAC	2 cut(s)	813, 891
Hpy99I	CGWCG	5 cut(s)	842, 845, 889, 935, 949
HpyAV	CCTTC	4 cut(s)	26, 104, 459, 826
HpyCH4III	ACNGT	3 cut(s)	297, 309, 983
HpyCH4IV	ACGT	5 cut(s)	141, 188, 336, 809, 840
HpyCH4V	TGCA	6 cut(s)	95, 174, 277, 313, 361, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 210, 283, 319
HpyF3I	CTNAG	2 cut(s)	397, 410
HpySE526I	ACGT	5 cut(s)	141, 188, 336, 809, 840
Hsp92I	GRCGYC	1 cut(s)	840
Hsp92II	CATG	6 cut(s)	110, 199, 548, 944, 970, 1050
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	813
Kzo9I	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
LmnI	GCTCC	2 cut(s)	29, 476
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	5 cut(s)	141, 188, 336, 809, 840
MalI	GATC	6 cut(s)	105, 168, 258, 666, 726, 990
MboI	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
MboII	GAAGA	5 cut(s)	251, 433, 511, 574, 778
MflI	RGATCY	2 cut(s)	664, 724
MhlI	GDGCHC	2 cut(s)	288, 398
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	3 cut(s)	16, 568, 575
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	442, 823
Mox20I	TGGCCA	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	3 cut(s)	126, 812, 1026
MslI	CAYNNNNRTG	3 cut(s)	179, 375, 512
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	4 cut(s)	205, 238, 289, 898
MspR9I	CCNGG	2 cut(s)	238, 289
Mva1269I	GAATGC	1 cut(s)	507
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	4 cut(s)	70, 210, 283, 319
NciI	CCSGG	2 cut(s)	238, 289
NcoI	CCATGG	1 cut(s)	966
NdeI	CATATG	1 cut(s)	1013
NdeII	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
NlaIII	CATG	6 cut(s)	110, 199, 548, 944, 970, 1050
NlaIV	GGNNCC	1 cut(s)	624
NmeAIII	GCCGAG	1 cut(s)	796
NsiI	ATGCAT	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	300
PagI	TCATGA	2 cut(s)	106, 1046
PceI	AGGCCT	1 cut(s)	611
PctI	GAATGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	9 cut(s)	42, 80, 149, 486, 593, 795, 901, 962, 976
Pfl23II	CGTACG	1 cut(s)	703
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Ppu21I	YACGTR	2 cut(s)	189, 337
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
PspLI	CGTACG	1 cut(s)	703
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	2 cut(s)	622, 891
PspPPI	RGGWCCY	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	664, 724
RsaI	GTAC	2 cut(s)	140, 705
RsaNI	GTAC	2 cut(s)	139, 704
RseI	CAYNNNNRTG	3 cut(s)	179, 375, 512
SaqAI	TTAA	3 cut(s)	126, 812, 1026
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	6 cut(s)	103, 166, 256, 664, 724, 988
Sau96I	GGNCC	2 cut(s)	622, 891
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	238, 289
SduI	GDGCHC	2 cut(s)	288, 398
SfaNI	GCATC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	300
SinI	GGWCC	2 cut(s)	622, 891
SmiMI	CAYNNNNRTG	3 cut(s)	179, 375, 512
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	3 cut(s)	16, 568, 575
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	2 cut(s)	490, 799
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	2 cut(s)	236, 287
StyI	CCWWGG	2 cut(s)	606, 966
TaaI	ACNGT	3 cut(s)	297, 309, 983
TaiI	ACGT	5 cut(s)	144, 191, 339, 812, 843
TaqI	TCGA	3 cut(s)	78, 255, 300
TaqII	GACCGA	2 cut(s)	260, 908
TasI	AATT	3 cut(s)	16, 568, 575
TfiI	GAWTC	9 cut(s)	42, 80, 149, 486, 593, 795, 901, 962, 976
Tru1I	TTAA	3 cut(s)	126, 812, 1026
Tru9I	TTAA	3 cut(s)	126, 812, 1026
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	123, 212, 426, 434, 511
TspGWI	ACGGA	3 cut(s)	691, 747, 929
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	622, 891
XapI	RAATTY	3 cut(s)	16, 568, 575
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	1 cut(s)	841
Zsp2I	ATGCAT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.