Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

34491689 .. 34494059

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G384600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTGTGCCCTTCACACTCTAGCATTCAAGGTTCTGTACATTTTGAATTTTGCGATTGAATTTTACAGAAAAGGAAAGAAAGCAATACGGTACAACGTACCTGTAGGCTTTGGTGAAGAAGCAAGACCATGGGAAATTTCATCTCCATTCACGCTGCCAAAGGTTATTATGGGTTTTGAAAAACTCCGTAGAAGAAGATTCATGATAAGGCGAAAACCGATACAGCTGGGTTCCCTGGACAGCCATGGTGCAACCATGTCGCATGAAGGATTAAAGACAGTAAGAGTAGACAACCGTTGTGATTTCTCAAGCTATTCAGATCTCTGTATTTGCGTCGTGACCTGGAACATGAATGGCCAGGTCACCTACGAAGATTTGGCAGAGCTGGTTGGGAACAATCGGAAGTTTGATCTTTTGGTCGTAGGTCTGCAGGAGGTGCCCCGCAAAAATATTTCACGACTTTTACAGGCAGCGCTGCTTGACTCTCACATCTTGTTGGGAAAATCCATCATGCAATCCATACACCTCTATGTGTTTGGGCTAAAGGACTCAGATTTGTTCACCAAAGAAGTGAAGATTGATAAGAGTCCAGTAGGGGGCTTTGGAGGACTAATTAGGAGAAAGAAAGGAGCGGTGGCAATCCGCCTTAACTACAAAGGCATTACAATGGTGTTCATCTCTTGCCATCTCTCTGCTCATGCTCAGAACGTGGAGAAGAGAAATTCTGAATTCAGAAACGTATCTGAATCTCTTTTCTCACAGAAACTGAACCCTTATGCAAGACCTGCTCAAATTACTGTTTGGTTGGGAGATCTCAACTACAGGATACAAGGGATCGGCAACTATCCCGCAAGAGATCTCATACACAATGATCTTCACAGACTACTCACTAATAATGACCAGCTCTTACAAGAGGCTGAGAGAGGACAGATCTTCAAAGGTTATAGCGAGGGCACATTAACGTTTAAGCCCACATATAAATATAACATTGGAAGCAGCAATTATGATACAAGTTACAAGGTGAGAATGCCATCGTGGACGGATCGGATTTTATTCAAGACTCAAGACACGGAGGAAATCCATGCAACGTTGCATTCGTACGAAGCCATGGACGACATTCACAGTTCTGATCACAAGCCTGTCAAAGCTCATATATGTTTAAAGCTCAGCAAACCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

394

Amino Acids

44.95

Weight (kDa)

9.48

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	4 cut(s)	442, 632, 643, 849
AclI	AACGTT	2 cut(s)	962, 1088
AclWI	GGATC	2 cut(s)	842, 1050
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	5 cut(s)	46, 59, 135, 721, 728
AfaI	GTAC	4 cut(s)	38, 92, 99, 1100
AfeI	AGCGCT	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	596
AgsI	TTSAA	6 cut(s)	28, 46, 59, 179, 937, 1057
AjnI	CCWGG	3 cut(s)	234, 341, 357
AluBI	AGCT	6 cut(s)	226, 312, 385, 904, 1148, 1165
AluI	AGCT	6 cut(s)	226, 312, 385, 904, 1148, 1165
AlwI	GGATC	2 cut(s)	842, 1050
AlwNI	CAGNNNCTG	1 cut(s)	766
Aor51HI	AGCGCT	1 cut(s)	474
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	4 cut(s)	154, 470, 475, 996
ApoI	RAATTY	5 cut(s)	46, 59, 135, 721, 728
AspLEI	GCGC	1 cut(s)	475
AsuHPI	GGTGA	4 cut(s)	125, 355, 553, 1033
BaeGI	GKGCMC	3 cut(s)	10, 441, 956
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	141, 462, 482, 1008
BccI	CCATC	3 cut(s)	515, 693, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	3 cut(s)	236, 343, 359
BciVI	GTATCC	1 cut(s)	819
BclI	TGATCA	1 cut(s)	1129
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	3 cut(s)	102, 428, 820
BfoI	RGCGCY	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	793
BfuI	GTATCC	1 cut(s)	819
BglII	AGATCT	4 cut(s)	319, 811, 856, 930
BisI	GCNGC	4 cut(s)	155, 471, 476, 997
BlpI	GCTNAGC	1 cut(s)	1166
BlsI	GCNGC	4 cut(s)	156, 472, 477, 998
Bme1390I	CCNGG	3 cut(s)	236, 343, 359
BmiI	GGNNCC	2 cut(s)	232, 438
BmrFI	CCNGG	3 cut(s)	236, 343, 359
Bpu1102I	GCTNAGC	1 cut(s)	1166
BpuEI	CTTGAG	2 cut(s)	292, 1047
BsaJI	CCNNGG	4 cut(s)	128, 234, 244, 1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	590
BseBI	CCWGG	3 cut(s)	236, 343, 359
BseDI	CCNNGG	4 cut(s)	128, 234, 244, 1107
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	4 cut(s)	564, 716, 909, 1180
BseNI	ACTGG	1 cut(s)	590
BseSI	GKGCMC	3 cut(s)	10, 441, 956
BseXI	GCAGC	4 cut(s)	141, 462, 482, 1008
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	436
BsiWI	CGTACG	1 cut(s)	1098
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmI	GAATGC	3 cut(s)	23, 1032, 1093
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	10, 441, 956
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
Bsp1720I	GCTNAGC	1 cut(s)	1166
Bsp19I	CCATGG	3 cut(s)	128, 244, 1107
BspACI	CCGC	4 cut(s)	442, 632, 643, 849
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	4 cut(s)	563, 715, 910, 1179
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	232, 438
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	2 cut(s)	842, 1050
BspT107I	GGYRCC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	4 cut(s)	128, 234, 244, 1107
BssMI	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
BssT1I	CCWWGG	3 cut(s)	128, 244, 1107
Bst2UI	CCWGG	3 cut(s)	236, 343, 359
Bst4CI	ACNGT	5 cut(s)	90, 280, 296, 799, 1124
Bst6I	CTCTTC	1 cut(s)	710
BstAPI	GCANNNNNTGC	2 cut(s)	436, 785
BstAUI	TGTACA	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	550, 702, 918, 1166
BstDSI	CCRYGG	3 cut(s)	128, 244, 1107
BstEII	GGTNACC	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	9 cut(s)	322, 412, 814, 837, 859, 874, 933, 1045, 1132
BstMBI	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 785
BstNI	CCWGG	3 cut(s)	236, 343, 359
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	3 cut(s)	234, 341, 357
BstSFI	CTRYAG	3 cut(s)	102, 428, 820
BstSLI	GKGCMC	3 cut(s)	10, 441, 956
BstV1I	GCAGC	4 cut(s)	141, 462, 482, 1008
BstX2I	RGATCY	4 cut(s)	319, 811, 856, 930
BstYI	RGATCY	4 cut(s)	319, 811, 856, 930
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	3 cut(s)	128, 244, 1107
BveI	ACCTGC	1 cut(s)	793
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	475
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	4 cut(s)	37, 91, 98, 1099
CviQI	GTAC	4 cut(s)	37, 91, 98, 1099
DdeI	CTNAG	4 cut(s)	550, 702, 918, 1166
DpnI	GATC	9 cut(s)	321, 411, 813, 836, 858, 873, 932, 1044, 1131
DpnII	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
DraI	TTTAAA	1 cut(s)	1161
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
EciI	GGCGGA	1 cut(s)	632
Eco130I	CCWWGG	3 cut(s)	128, 244, 1107
Eco47III	AGCGCT	1 cut(s)	474
Eco91I	GGTNACC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	234, 341, 357
EcoT14I	CCWWGG	3 cut(s)	128, 244, 1107
ErhI	CCWWGG	3 cut(s)	128, 244, 1107
FauI	CCCGC	2 cut(s)	449, 856
FbaI	TGATCA	1 cut(s)	1129
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	155, 471, 476, 997
Fsp4HI	GCNGC	4 cut(s)	155, 471, 476, 997
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	4 cut(s)	155, 471, 476, 997
GsaI	CCCAGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	357
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	6 cut(s)	198, 482, 548, 586, 746, 1060
HphI	GGTGA	4 cut(s)	125, 355, 553, 1033
Hpy166II	GTNNAC	3 cut(s)	289, 561, 1038
Hpy188I	TCNGA	9 cut(s)	319, 402, 553, 705, 727, 734, 745, 1047, 1129
Hpy188III	TCNNGA	5 cut(s)	202, 337, 456, 1057, 1064
Hpy8I	GTNNAC	3 cut(s)	289, 561, 1038
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	20, 260
HpyCH4III	ACNGT	5 cut(s)	90, 280, 296, 799, 1124
HpyCH4IV	ACGT	5 cut(s)	96, 708, 738, 962, 1088
HpyCH4V	TGCA	6 cut(s)	251, 430, 514, 779, 1085, 1093
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 785
HpyF3I	CTNAG	4 cut(s)	550, 702, 918, 1166
HpySE526I	ACGT	5 cut(s)	96, 708, 738, 962, 1088
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	1129
Kzo9I	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	4 cut(s)	141, 462, 482, 1008
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	5 cut(s)	96, 708, 738, 962, 1088
MaeIII	GTNAC	3 cut(s)	337, 361, 1013
MalI	GATC	9 cut(s)	321, 411, 813, 836, 858, 873, 932, 1044, 1131
MbiI	CCGCTC	1 cut(s)	632
MboI	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
MboII	GAAGA	8 cut(s)	128, 204, 207, 383, 586, 727, 866, 925
MflI	RGATCY	4 cut(s)	319, 811, 856, 930
MhlI	GDGCHC	3 cut(s)	10, 441, 956
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	8 cut(s)	46, 59, 135, 612, 721, 728, 792, 1000
MluNI	TGGCCA	1 cut(s)	357
MlyI	GAGTC	4 cut(s)	476, 542, 595, 1054
MnlI	CCTC	7 cut(s)	427, 536, 599, 907, 917, 943, 1066
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	5 cut(s)	272, 648, 959, 966, 1160
MslI	CAYNNNNRTG	2 cut(s)	528, 665
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	226
MspR9I	CCNGG	3 cut(s)	236, 343, 359
Mva1269I	GAATGC	3 cut(s)	23, 1032, 1093
MvaI	CCWGG	3 cut(s)	236, 343, 359
MwoI	GCNNNNNNNGC	2 cut(s)	436, 785
NcoI	CCATGG	3 cut(s)	128, 244, 1107
NdeII	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
NlaIV	GGNNCC	2 cut(s)	232, 438
NmuCI	GTSAC	2 cut(s)	337, 361
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	1094
PctI	GAATGC	3 cut(s)	23, 1032, 1093
PfeI	GAWTC	2 cut(s)	198, 746
Pfl23II	CGTACG	1 cut(s)	1098
PkrI	GCNGC	4 cut(s)	156, 472, 477, 998
PleI	GAGTC	4 cut(s)	476, 542, 594, 1054
PpsI	GAGTC	4 cut(s)	476, 542, 594, 1054
Psp1406I	AACGTT	2 cut(s)	962, 1088
Psp6I	CCWGG	3 cut(s)	234, 341, 357
PspEI	GGTNACC	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	3 cut(s)	234, 341, 357
PspLI	CGTACG	1 cut(s)	1098
PspN4I	GGNNCC	2 cut(s)	232, 438
PstI	CTGCAG	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	4 cut(s)	319, 811, 856, 930
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	4 cut(s)	38, 92, 99, 1100
RsaNI	GTAC	4 cut(s)	37, 91, 98, 1099
RseI	CAYNNNNRTG	2 cut(s)	528, 665
SaqAI	TTAA	5 cut(s)	272, 648, 959, 966, 1160
SatI	GCNGC	4 cut(s)	155, 471, 476, 997
Sau3AI	GATC	9 cut(s)	319, 409, 811, 834, 856, 871, 930, 1042, 1129
SchI	GAGTC	4 cut(s)	476, 542, 595, 1054
ScrFI	CCNGG	3 cut(s)	236, 343, 359
SduI	GDGCHC	3 cut(s)	10, 441, 956
SfcI	CTRYAG	3 cut(s)	102, 428, 820
SmiMI	CAYNNNNRTG	2 cut(s)	528, 665
SmlI	CTYRAG	2 cut(s)	307, 1062
SmoI	CTYRAG	2 cut(s)	307, 1062
Sse9I	AATT	8 cut(s)	46, 59, 135, 612, 721, 728, 792, 1000
SsiI	CCGC	4 cut(s)	442, 632, 643, 849
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	234, 341, 357
StyI	CCWWGG	3 cut(s)	128, 244, 1107
TaaI	ACNGT	5 cut(s)	90, 280, 296, 799, 1124
TaiI	ACGT	5 cut(s)	99, 711, 741, 965, 1091
TasI	AATT	8 cut(s)	46, 59, 135, 612, 721, 728, 792, 1000
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	198, 746
Tru1I	TTAA	5 cut(s)	272, 648, 959, 966, 1160
Tru9I	TTAA	5 cut(s)	272, 648, 959, 966, 1160
TseFI	GTSAC	2 cut(s)	337, 361
TseI	GCWGC	4 cut(s)	154, 470, 475, 996
Tsp45I	GTSAC	2 cut(s)	337, 361
TspDTI	ATGAA	5 cut(s)	129, 190, 279, 365, 664
TspGWI	ACGGA	3 cut(s)	176, 1055, 1085
XapI	RAATTY	5 cut(s)	46, 59, 135, 721, 728
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.