Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007889

Physical Location & Seq

Genomic Coordinates Reverse (-)

8775605 .. 8779480

Gene Structure 3876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGAAATTCCAGCTCCATTAAGCATAGCAGTGAAGGAGGAAGATTGAAGCACTCGAAGAGAAAGCACAACCAGCTGGGTGTAACTTGTTCTGCAGGTTATGATCATGATTATCATGAAGGAATAAAGAGTGTAAGAGCGGACAACCACGTTTGTGATTTCTCTCCTTATTCGGATCTCTGCATTTGCGTGGTTACTTGGAACATGAACGGTCAAGTGAGTTACCAAGATCTGGAGGAGATGGTTGCCGGGAACAACCGCAAGTTCGATCTTCTGGCTATCGGTCTGCAAGAAGTGCCCCGGAAAAATATTTCACGACTGTTGCAGACAGCGCTTCTTGACTCTCACATCTTGTTAGGAAAAGCCACTATGCAATCAATACACCTGTATATCTTTGGGCCAAAGGGCTCAGATTTCTTCCTCAGAGAAATGAAGATCGATAAGGTTTCAGTAGGGGGATGTGGAGGGTTAATTGGGAGAAAGAAAGGAGCTGTGGGAATCCGCATCAACTATAAAGGCATTCCGATGGTCTTCATCTCTTGCCATCTCTCTGCTCATGCTCACAATGTGGGGAAGAGGAATTCAGAATACAAGAGCGTATCAGAATCTCTTTTTTCCAAGAACTTGAACCCTTATGCTTCACCTCCCAAAATCATTGTTTGGTTGGGAGATCTCAACTATAGAATACAAGGGATTGAAACTCATTCCGTACGAAAACTGATAAACAAGGACCTTCACGGACTACTAACCAGCAATGACCAACTATTACAAGAGGCAGAAAGAGGAGAGATCTTCGAAGGATACCACGAGGGGACGATAACGTTCAAACCCACTTACAAATACGACGTTGGAAGTAGCAACTACGACACAAGTTATAAGTTGGGATCTTATCTGATCTGGGTCTGCTCTGCTACCTCTCACCATTGTTGCACTCTCATTGATTTCTTAAAGTTAAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0036092 GO:0042221 GO:0042578 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0050896 GO:0052866 GO:0071704 GO:0071944 GO:0090407 GO:0097305 GO:0106018 GO:0106019 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

321

Amino Acids

35.76

Weight (kDa)

8.91

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	65 - 293	1.3e-53	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47510 AT1G47510 AT1G47510 AT1G47510
fragaria_vesca	FvH4_2g40410 FvH4_2g40410 FvH4_2g40410 FvH4_2g40410
malus_domestica	MD08G1037300.v1.1
prunus_persica	Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1 Prupe.1G384600_v2.0.a1
pyrus_communis	pycom08g02970
rosa_chinensis	RchiOBHm_Chr2g0154391 RchiOBHm_Chr6g0300331
rosa_laevigata	RLG00000011347
rosa_roxburghii	Rroxscaffold_7G00167890
rosa_samantha	Rh5DG391300 Rh6AG407800 Rh6BG415100 Rh6CG422500 Rh6DG408100
rosa_wichuraiana	Rw6G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	3 cut(s)	140, 259, 502
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	2 cut(s)	183, 892
AcsI	RAATTY	2 cut(s)	7, 580
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	1 cut(s)	711
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	49, 628, 698, 826
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	3 cut(s)	15, 76, 491
AluI	AGCT	3 cut(s)	15, 76, 491
AlwI	GGATC	2 cut(s)	183, 892
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	1 cut(s)	398
ApoI	RAATTY	2 cut(s)	7, 580
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	398, 730
AsuC2I	CCSGG	2 cut(s)	250, 301
AsuHPI	GGTGA	2 cut(s)	633, 911
AsuII	TTCGAA	1 cut(s)	795
AvaII	GGWCC	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	523
BccI	CCATC	3 cut(s)	235, 520, 552
BciVI	GTATCC	1 cut(s)	794
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	250, 301
BfmI	CTRYAG	2 cut(s)	93, 679
BfoI	RGCGCY	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	794
BglII	AGATCT	3 cut(s)	229, 670, 789
Bme1390I	CCNGG	2 cut(s)	250, 301
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	398, 730
BmrFI	CCNGG	2 cut(s)	250, 301
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	523
BpmI	CTGGAG	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	795
BpuMI	CCSGG	2 cut(s)	250, 301
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	760
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	423, 436
BseRI	GAGGAG	2 cut(s)	251, 798
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	249, 301
BsiWI	CGTACG	1 cut(s)	709
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	300, 410
Bsp143I	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
BspACI	CCGC	3 cut(s)	140, 259, 502
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	422, 435
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	2 cut(s)	106, 115
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	183, 892
BspT104I	TTCGAA	1 cut(s)	795
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
BssSI	CACGAG	1 cut(s)	806
Bst2BI	CACGAG	1 cut(s)	806
Bst4CI	ACNGT	2 cut(s)	212, 321
Bst6I	CTCTTC	2 cut(s)	53, 569
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	409, 422
BstF5I	GGATG	1 cut(s)	464
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	9 cut(s)	106, 178, 232, 271, 438, 673, 792, 887, 897
BstMBI	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
BstSCI	CCNGG	2 cut(s)	248, 299
BstSFI	CTRYAG	2 cut(s)	93, 679
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	523
BstX2I	RGATCY	5 cut(s)	175, 229, 670, 789, 884
BstYI	RGATCY	5 cut(s)	175, 229, 670, 789, 884
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	464
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	86
CciI	TCATGA	2 cut(s)	106, 115
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	398, 730
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	4 cut(s)	107, 116, 205, 557
CviJI	RGCY	7 cut(s)	15, 76, 278, 365, 400, 408, 491
CviKI_1	RGCY	7 cut(s)	15, 76, 278, 365, 400, 408, 491
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	2 cut(s)	409, 422
DpnI	GATC	9 cut(s)	105, 177, 231, 270, 437, 672, 791, 886, 896
DpnII	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
DraIII	CACNNNGTG	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	53, 569
EarI	CTCTTC	2 cut(s)	53, 569
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	730
Eco47III	AGCGCT	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	4 cut(s)	110, 119, 208, 560
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	4 cut(s)	106, 115, 204, 556
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	410
GlaI	GCGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	2 cut(s)	249, 301
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	110, 119, 208, 560
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	341, 498, 605
HpaII	CCGG	2 cut(s)	249, 301
HphI	GGTGA	2 cut(s)	633, 911
Hpy188I	TCNGA	7 cut(s)	175, 412, 425, 525, 586, 604, 894
Hpy188III	TCNNGA	5 cut(s)	107, 116, 233, 315, 338
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	4 cut(s)	29, 113, 743, 791
HpyCH4III	ACNGT	2 cut(s)	212, 321
HpyCH4IV	ACGT	3 cut(s)	150, 821, 846
HpyCH4V	TGCA	6 cut(s)	95, 183, 289, 325, 373, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
HpyF3I	CTNAG	2 cut(s)	409, 422
HpySE526I	ACGT	3 cut(s)	150, 821, 846
Hsp92II	CATG	4 cut(s)	110, 119, 208, 560
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
LmnI	GCTCC	2 cut(s)	20, 488
LweI	GCATC	1 cut(s)	513
MaeII	ACGT	3 cut(s)	150, 821, 846
MaeIII	GTNAC	3 cut(s)	82, 193, 221
MalI	GATC	9 cut(s)	105, 177, 231, 270, 437, 672, 791, 886, 896
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
MboII	GAAGA	8 cut(s)	54, 70, 263, 409, 445, 523, 586, 784
MflI	RGATCY	5 cut(s)	175, 229, 670, 789, 884
MhlI	GDGCHC	2 cut(s)	300, 410
MluCI	AATT	3 cut(s)	7, 471, 580
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	829
MseI	TTAA	5 cut(s)	21, 470, 947, 953, 961
MslI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	249, 301
MspR9I	CCNGG	2 cut(s)	250, 301
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	73, 295, 331
NciI	CCSGG	2 cut(s)	250, 301
NdeII	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
NlaIII	CATG	4 cut(s)	110, 119, 208, 560
NspV	TTCGAA	1 cut(s)	795
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	2 cut(s)	106, 115
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	498, 605
Pfl23II	CGTACG	1 cut(s)	709
PflMI	CCANNNNNTGG	1 cut(s)	232
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	730
PsiI	TTATAA	1 cut(s)	876
Psp1406I	AACGTT	1 cut(s)	821
Psp5II	RGGWCCY	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	76
PspLI	CGTACG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	398, 730
PspPPI	RGGWCCY	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	5 cut(s)	175, 229, 670, 789, 884
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
SaqAI	TTAA	5 cut(s)	21, 470, 947, 953, 961
Sau3AI	GATC	9 cut(s)	103, 175, 229, 268, 435, 670, 789, 884, 894
Sau96I	GGNCC	2 cut(s)	398, 730
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	250, 301
SduI	GDGCHC	2 cut(s)	300, 410
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	2 cut(s)	93, 679
SfuI	TTCGAA	1 cut(s)	795
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	4 cut(s)	30, 153, 188, 524
Sse9I	AATT	3 cut(s)	7, 471, 580
SsiI	CCGC	3 cut(s)	140, 259, 502
SspI	AATATT	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	248, 299
TaaI	ACNGT	2 cut(s)	212, 321
TaiI	ACGT	3 cut(s)	153, 824, 849
TaqI	TCGA	4 cut(s)	56, 267, 438, 795
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	3 cut(s)	7, 471, 580
TfiI	GAWTC	2 cut(s)	498, 605
Tru1I	TTAA	5 cut(s)	21, 470, 947, 953, 961
Tru9I	TTAA	5 cut(s)	21, 470, 947, 953, 961
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	132, 221, 446, 523
TspGWI	ACGGA	2 cut(s)	697, 753
TspRI	CASTG	1 cut(s)	37
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	2 cut(s)	7, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.