Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Reverse (-)

17786498 .. 17789024

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATAGTGGAACGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAACTCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCCGAATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATTGACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGAGAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAATTGCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAAGAAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGGTGGCAAGAAGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

145

Amino Acids

16.27

Weight (kDa)

10.02

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP19	PF01922	13 - 107	2.4e-34	SRP19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	1 cut(s)	196
AciI	CCGC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	250, 312
AgsI	TTSAA	5 cut(s)	157, 235, 276, 387, 405
AluBI	AGCT	2 cut(s)	77, 347
AluI	AGCT	2 cut(s)	77, 347
AoxI	GGCC	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	310
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	312, 369
BmsI	GCATC	3 cut(s)	135, 279, 292
Bpu10I	CCTNAGC	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	319
BseMII	CTCAG	3 cut(s)	69, 362, 386
BseNI	ACTGG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	70, 361, 385
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	312, 369
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	78, 348, 372
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 353, 420
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	249, 311
CviAII	CATG	2 cut(s)	108, 205
CviJI	RGCY	4 cut(s)	77, 266, 347, 377
CviKI_1	RGCY	4 cut(s)	77, 266, 347, 377
CviQI	GTAC	2 cut(s)	249, 311
DdeI	CTNAG	3 cut(s)	78, 348, 372
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	111, 208
FaiI	YATR	5 cut(s)	43, 54, 109, 190, 206
FatI	CATG	2 cut(s)	107, 204
FauI	CCCGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	306
FspBI	CTAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	111, 208
HinfI	GANTC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	288, 351
Hpy188III	TCNNGA	4 cut(s)	130, 175, 323, 393
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	126, 147, 208, 229, 292, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 353, 420
HpyF3I	CTNAG	3 cut(s)	78, 348, 372
Hsp92II	CATG	2 cut(s)	111, 208
KpnI	GGTACC	1 cut(s)	314
LpnPI	CCDG	8 cut(s)	60, 276, 326, 336, 350, 359, 378, 396
LweI	GCATC	3 cut(s)	135, 279, 292
MaeI	CTAG	1 cut(s)	165
MboII	GAAGA	5 cut(s)	96, 99, 254, 370, 393
MfeI	CAATTG	1 cut(s)	230
MluCI	AATT	3 cut(s)	121, 230, 297
MnlI	CCTC	4 cut(s)	73, 216, 381, 400
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	2 cut(s)	24, 57
MunI	CAATTG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	289, 353, 420
NlaIII	CATG	2 cut(s)	111, 208
NlaIV	GGNNCC	2 cut(s)	312, 369
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	312, 369
RsaI	GTAC	2 cut(s)	250, 312
RsaNI	GTAC	2 cut(s)	249, 311
SaqAI	TTAA	2 cut(s)	24, 57
SetI	ASST	5 cut(s)	79, 349, 373, 392, 421
SfaNI	GCATC	3 cut(s)	135, 279, 292
SfcI	CTRYAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	121, 230, 297
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	129, 174
TasI	AATT	3 cut(s)	121, 230, 297
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	24, 57
Tru9I	TTAA	2 cut(s)	24, 57
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.