Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Forward (+)

11194588 .. 11196561

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1143900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGGAAGGGAGACGAATCAGTGTCGCGAAAGCGTGCGAAGGTCCTACTTGTGCTGAGATTGCTGATTGTTGCAGCTACTTCAAACTCCCATTTGCAATTGAGATAGATAAGGCTTATCCGCGCGATTTCATGCAAATTGGGAGAGTGAGGGTCTTGCTTAAAAGGGAAGATGGAACTCCATATAATCCAGACATTACTTCCAGGAAACAGCTGATGCTGAAAGTTGCGGAGATGGTTCCCAGACATCCTGGGAGGACTAGGAAGCAGGAGCCCGCCACATCCACATCAAGTGCTGGACCTGCCAAATCTGGGAAACATGGAAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

9.87

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP19	PF01922	2 - 83	7.9e-25	SRP19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccII	CGCG	3 cut(s)	29, 124, 126
AciI	CCGC	4 cut(s)	5, 122, 230, 276
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	203, 250
AluBI	AGCT	2 cut(s)	78, 214
AluI	AGCT	2 cut(s)	78, 214
Alw26I	GTCTC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	44, 299
AvaII	GGWCC	2 cut(s)	44, 299
BanII	GRGCYC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	167, 229
BciT130I	CCWGG	2 cut(s)	205, 252
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	205, 252
Bme18I	GGWCC	2 cut(s)	44, 299
BmgT120I	GGNCC	2 cut(s)	44, 299
BmiI	GGNNCC	2 cut(s)	240, 273
BmrFI	CCNGG	2 cut(s)	205, 252
BmsI	GCATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	205, 252
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	247, 281
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	3 cut(s)	29, 124, 126
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	4 cut(s)	5, 122, 230, 276
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	3 cut(s)	29, 124, 126
BspLI	GGNNCC	2 cut(s)	240, 273
BspMI	ACCTGC	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	205, 252
BstC8I	GCNNGC	2 cut(s)	37, 276
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	247, 281
BstFNI	CGCG	3 cut(s)	29, 124, 126
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 302
BstNI	CCWGG	2 cut(s)	205, 252
BstSCI	CCNGG	2 cut(s)	203, 250
BstUI	CGCG	3 cut(s)	29, 124, 126
BstV1I	GCAGC	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	247, 281
BtsIMutI	CAGTG	1 cut(s)	28
BtuMI	TCGCGA	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	37, 276
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	44, 299
CviAII	CATG	2 cut(s)	133, 320
CviJI	RGCY	4 cut(s)	78, 116, 214, 274
CviKI_1	RGCY	4 cut(s)	78, 116, 214, 274
DdeI	CTNAG	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	44, 299
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	203, 250
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	2 cut(s)	136, 323
FaiI	YATR	4 cut(s)	134, 184, 186, 321
FatI	CATG	2 cut(s)	132, 319
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	2 cut(s)	234, 268
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	136, 323
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	28, 191
HpyAV	CCTTC	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	75, 98, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 302
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	136, 323
HspAI	GCGC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	261
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	99, 138
MnlI	CCTC	2 cut(s)	144, 249
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	205, 252
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	205, 252
MvnI	CGCG	3 cut(s)	29, 124, 126
MwoI	GCNNNNNNNGC	2 cut(s)	62, 302
NlaIII	CATG	2 cut(s)	136, 323
NlaIV	GGNNCC	2 cut(s)	240, 273
NruI	TCGCGA	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	203, 250
PspGI	CCWGG	2 cut(s)	203, 250
PspN4I	GGNNCC	2 cut(s)	240, 273
PspPI	GGNCC	2 cut(s)	44, 299
PspPPI	RGGWCCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	214
RruI	TCGCGA	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	44, 299
ScrFI	CCNGG	2 cut(s)	205, 252
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	4 cut(s)	46, 80, 216, 304
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	2 cut(s)	44, 299
Sse9I	AATT	2 cut(s)	99, 138
SsiI	CCGC	4 cut(s)	5, 122, 230, 276
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	203, 250
TasI	AATT	2 cut(s)	99, 138
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	44, 299
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.