Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Reverse (-)

24316354 .. 24318615

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACAAAGACCTGCCCAGTATAAAGAAATGGGTTGTGCTGTATCCGGTTTATATCAATTCTAAGAAGACTGTGGCTGAAGGGAGGAGAATATCTCTTGAGAAAGCATGTGAGAATCCGACTTGTGCTGAGATTGGGGATTGCTGCAGCCATTTCAAAGTCCCGTTTGCAATTGAGATAGATAAGGCTTATCCACGTGATTTCTTTCAAAGAGGGCGCGTGAGGGTATTGCTCAAAAAAGCAGATGGAACTCCATATAATCCAGCTATTGCTACCAGGAAAGAGCTGATGCTTCGAGTCGCTGAGTTGGTTCCTAGACATCCTGGTAGGACCAAGAAGCAGGAATCAGCATCTGCATCTACTGCTGGGCCTTCCAAATCTGGGAAGCATGGGAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

136

Amino Acids

15.14

Weight (kDa)

9.95

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP19	PF01922	13 - 107	1.1e-32	SRP19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AccII	CGCG	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	157, 209
AjnI	CCWGG	2 cut(s)	275, 322
AluBI	AGCT	2 cut(s)	266, 286
AluI	AGCT	2 cut(s)	266, 286
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	144, 147
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	330, 368
AvaII	GGWCC	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	131, 159
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	277, 324
BciVI	GTATCC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme1390I	CCNGG	2 cut(s)	277, 324
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	330, 368
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	277, 324
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	3 cut(s)	279, 359, 365
BmuI	ACTGGG	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	277, 324
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	120, 294
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	131, 159
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	2 cut(s)	121, 295
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	149
BspMI	ACCTGC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	277, 324
Bst4CI	ACNGT	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	63, 129, 303
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	2 cut(s)	277, 324
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	275, 322
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	131, 159
BstV2I	GAAGAC	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	330, 368
CviAII	CATG	2 cut(s)	108, 389
CviJI	RGCY	6 cut(s)	77, 150, 188, 266, 286, 370
CviKI_1	RGCY	6 cut(s)	77, 150, 188, 266, 286, 370
DdeI	CTNAG	3 cut(s)	63, 129, 303
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	99
Eco72I	CACGTG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	275, 322
FaeI	CATG	2 cut(s)	111, 392
FaiI	YATR	6 cut(s)	23, 54, 109, 256, 258, 390
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	107, 388
Fnu4HI	GCNGC	2 cut(s)	145, 148
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	2 cut(s)	145, 148
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	111, 392
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	115, 297, 344
HpaII	CCGG	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	74, 381
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	147, 170, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	63, 129, 303
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	111, 392
HspAI	GCGC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	131, 159
LweI	GCATC	3 cut(s)	279, 359, 365
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	196
MboII	GAAGA	2 cut(s)	79, 406
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	2 cut(s)	58, 171
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	78, 206, 216
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	277, 324
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	277, 324
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	362
NlaIII	CATG	2 cut(s)	111, 392
NlaIV	GGNNCC	1 cut(s)	312
NspI	RCATGY	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	115, 344
PkrI	GCNGC	2 cut(s)	146, 149
PleI	GAGTC	1 cut(s)	305
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	275, 322
PspCI	CACGTG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	275, 322
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	330, 368
PstI	CTGCAG	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	353
SatI	GCNGC	2 cut(s)	145, 148
Sau96I	GGNCC	2 cut(s)	330, 368
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	277, 324
SetI	ASST	4 cut(s)	15, 199, 268, 288
SfaNI	GCATC	3 cut(s)	279, 359, 365
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	58, 171
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	275, 322
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	58, 171
TfiI	GAWTC	2 cut(s)	115, 344
TseI	GCWGC	2 cut(s)	144, 147
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.