Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Forward (+)

8704280 .. 8706250

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAGGCCAACCCGAATTATTGGCCATCTCTGCGGACAGTCCCCGTCGTCGTCGTCGAAACTCCATTCCAGTCTCAATCTCTCGCATATCACGGCTTGCTCTTCAAATCCTCCGCTGCTTGTTTTTCAACTTCTGTTAGTAGGCGAGATATGGATAAGGAGACCCCCAATATAAAGAAATGGATTGTGCTTTATCCGGTTTATATTAACTCGAAGAAAACTATGGCGGAAGGGAGACGAATCAGTATCGCGAAAGCTTGCGAAGGTCCTACTTGTGCTGAGATTGCTGATTGTTGCAGCTATTTCAAACTCCCATTTGCAATTGAGATAGATAAGGCTTATCCACGCGATTTCATGCAAATTGGGAGAGTGAGGGTCTTGCTTAAGAGGGAAGATGGAACTCCATATAATCCAGACATTACTTCCAGGAAACAACTGATGCTGAAAGTTGCGGAGATGGTTCCTAGACATCCTGGGAGGACTAGGAAGCAGGAGCCCGCGGCATCGACGTCAAGTGCTGGACCTGCCAAATCTGGGAAACATGGAAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

9.9

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	532
AccII	CGCG	3 cut(s)	251, 348, 500
AciI	CCGC	6 cut(s)	34, 114, 227, 452, 498, 500
AcoI	YGGCCR	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	534
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	106, 129, 307
AjnI	CCWGG	2 cut(s)	425, 472
AluBI	AGCT	2 cut(s)	257, 300
AluI	AGCT	2 cut(s)	257, 300
Alw26I	GTCTC	3 cut(s)	78, 155, 229
AoxI	GGCC	2 cut(s)	6, 23
ApeKI	GCWGC	2 cut(s)	116, 297
AspS9I	GGNCC	2 cut(s)	266, 521
AvaII	GGWCC	2 cut(s)	266, 521
BalI	TGGCCA	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	103, 309
BccI	CCATC	3 cut(s)	34, 389, 451
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	2 cut(s)	427, 474
BcoDI	GTCTC	3 cut(s)	78, 155, 229
BfaI	CTAG	2 cut(s)	465, 483
BfrI	CTTAAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	117, 298, 501
BlsI	GCNGC	3 cut(s)	118, 299, 502
Bme1390I	CCNGG	2 cut(s)	427, 474
Bme18I	GGWCC	2 cut(s)	266, 521
BmgT120I	GGNCC	2 cut(s)	266, 521
BmiI	GGNNCC	2 cut(s)	462, 495
BmrFI	CCNGG	2 cut(s)	427, 474
BmsI	GCATC	2 cut(s)	429, 512
BsaHI	GRCGYC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	473, 498
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	427, 474
BseDI	CCNNGG	2 cut(s)	473, 498
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	103, 309
Bsh1236I	CGCG	3 cut(s)	251, 348, 500
BshFI	GGCC	2 cut(s)	8, 25
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	3 cut(s)	78, 155, 229
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	8, 25
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp68I	TCGCGA	1 cut(s)	251
BspACI	CCGC	6 cut(s)	34, 114, 227, 452, 498, 500
BspANI	GGCC	2 cut(s)	8, 25
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	3 cut(s)	251, 348, 500
BspLI	GGNNCC	2 cut(s)	462, 495
BspMI	ACCTGC	1 cut(s)	532
BspQI	GCTCTTC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	473, 498
BssNI	GRCGYC	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	427, 474
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	509
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	98, 259, 498
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	3 cut(s)	251, 348, 500
BstMAI	GTCTC	3 cut(s)	78, 155, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 284, 524
BstNI	CCWGG	2 cut(s)	427, 474
BstSCI	CCNGG	2 cut(s)	425, 472
BstUI	CGCG	3 cut(s)	251, 348, 500
BstV1I	GCAGC	2 cut(s)	103, 309
BsuRI	GGCC	2 cut(s)	8, 25
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	469
BtuMI	TCGCGA	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	98, 259, 498
Cfr13I	GGNCC	2 cut(s)	266, 521
Cfr42I	CCGCGG	1 cut(s)	501
CviAII	CATG	2 cut(s)	355, 542
CviJI	RGCY	7 cut(s)	8, 25, 96, 257, 300, 338, 496
CviKI_1	RGCY	7 cut(s)	8, 25, 96, 257, 300, 338, 496
DdeI	CTNAG	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	266, 521
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	425, 472
EcoT38I	GRGCYC	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	2 cut(s)	358, 545
FaiI	YATR	9 cut(s)	88, 152, 173, 204, 224, 356, 406, 408, 543
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	354, 541
FauI	CCCGC	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	117, 298, 501
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	117, 298, 501
FspBI	CTAG	2 cut(s)	465, 483
GluI	GCNGC	3 cut(s)	117, 298, 501
HaeIII	GGCC	2 cut(s)	8, 25
HapII	CCGG	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	358, 545
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	250, 413
Hpy99I	CGWCG	5 cut(s)	50, 53, 56, 59, 511
HpyAV	CCTTC	2 cut(s)	224, 257
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	297, 320, 358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 284, 524
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	358, 545
KspI	CCGCGG	1 cut(s)	501
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	103, 309
LweI	GCATC	2 cut(s)	429, 512
MaeI	CTAG	2 cut(s)	465, 483
MaeII	ACGT	1 cut(s)	509
MboII	GAAGA	3 cut(s)	94, 226, 404
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	498
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	3 cut(s)	16, 321, 360
MluNI	TGGCCA	1 cut(s)	25
MnlI	CCTC	4 cut(s)	121, 366, 381, 471
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	2 cut(s)	207, 384
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	2 cut(s)	116, 500
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	427, 474
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	427, 474
MvnI	CGCG	3 cut(s)	251, 348, 500
MwoI	GCNNNNNNNGC	3 cut(s)	31, 284, 524
NlaIII	CATG	2 cut(s)	358, 545
NlaIV	GGNNCC	2 cut(s)	462, 495
NruI	TCGCGA	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	118, 299, 502
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	425, 472
PspGI	CCWGG	2 cut(s)	425, 472
PspN4I	GGNNCC	2 cut(s)	462, 495
PspPI	GGNCC	2 cut(s)	266, 521
PspPPI	RGGWCCY	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	207, 384
SatI	GCNGC	3 cut(s)	117, 298, 501
Sau96I	GGNCC	2 cut(s)	266, 521
ScrFI	CCNGG	2 cut(s)	427, 474
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	5 cut(s)	259, 268, 302, 512, 526
SfaNI	GCATC	2 cut(s)	429, 512
Sfr303I	CCGCGG	1 cut(s)	501
SgrBI	CCGCGG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	266, 521
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	16, 321, 360
SsiI	CCGC	6 cut(s)	34, 114, 227, 452, 498, 500
SspMI	CTAG	2 cut(s)	465, 483
StyD4I	CCNGG	2 cut(s)	425, 472
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	57, 212, 506
TasI	AATT	3 cut(s)	16, 321, 360
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	2 cut(s)	207, 384
Tru9I	TTAA	2 cut(s)	207, 384
TseI	GCWGC	2 cut(s)	116, 297
TspDTI	ATGAA	2 cut(s)	17, 343
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	266, 521
XspI	CTAG	2 cut(s)	465, 483
ZraI	GACGTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.