Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Reverse (-)

13358803 .. 13361555

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATAAGGACCTCCCCAATATAAAGAGATGGGTTGTGATATATCCTGTTTATATTAATTCAAAGAAAACCGTAGCTGAAGGGAGACGAATAAGTGTCGAGAAAGCGTGTGAGAGTCCTACTTGTGCTGAAATCGGTGATTGCTGCAGCCATTTCAAGCTCCCATTTGCAATTGAGATAGATAAGGCTTATCCGCGGGATTTTATGCAAATAGGGAGAGTGAGGGTCTTGCTGAAAAGGGAAGATGGAACTCCATTTAATCCAGCCATTACAACCAGGAAACAGCTGATGCTCAAAGTTGCCGAGTTGGTTCCTAGACATCCTGGCAGGACTAAGAAGCAGGAGCCTGCTGCATCCGCATCAACTGCTGGACCGTCCAAATCTGGGAAACATGGAAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

137

Amino Acids

15.26

Weight (kDa)

9.94

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AciI	CCGC	3 cut(s)	194, 196, 357
AcuI	CTGAAG	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	63, 157
AjnI	CCWGG	2 cut(s)	275, 322
AluBI	AGCT	3 cut(s)	77, 160, 286
AluI	AGCT	3 cut(s)	77, 160, 286
Alw26I	GTCTC	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	144, 147, 350
AseI	ATTAAT	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	10, 371
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	10, 371
BbvI	GCAGC	3 cut(s)	131, 159, 337
BccI	CCATC	2 cut(s)	24, 239
BciT130I	CCWGG	2 cut(s)	277, 324
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	3 cut(s)	145, 148, 351
BlsI	GCNGC	3 cut(s)	146, 149, 352
Bme1390I	CCNGG	2 cut(s)	277, 324
Bme18I	GGWCC	2 cut(s)	10, 371
BmgT120I	GGNCC	2 cut(s)	10, 371
BmiI	GGNNCC	2 cut(s)	312, 345
BmrFI	CCNGG	2 cut(s)	277, 324
BmsI	GCATC	3 cut(s)	279, 362, 368
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	277, 324
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	319, 353
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	131, 159, 337
Bsh1236I	CGCG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BspACI	CCGC	3 cut(s)	194, 196, 357
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	312, 345
BspMAI	CTGCAG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	277, 324
Bst4CI	ACNGT	2 cut(s)	73, 375
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	319, 353
BstFNI	CGCG	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	2 cut(s)	277, 324
BstSCI	CCNGG	2 cut(s)	275, 322
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	131, 159, 337
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	319, 353
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	10, 371
Cfr42I	CCGCGG	1 cut(s)	197
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	7 cut(s)	77, 150, 160, 188, 266, 286, 346
CviKI_1	RGCY	7 cut(s)	77, 150, 160, 188, 266, 286, 346
DdeI	CTNAG	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	10, 371
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	275, 322
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	395
FaiI	YATR	5 cut(s)	23, 43, 54, 206, 393
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	145, 148, 351
FokI	GGATG	2 cut(s)	306, 340
Fsp4HI	GCNGC	3 cut(s)	145, 148, 351
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	145, 148, 351
Hin1II	CATG	1 cut(s)	395
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	73, 375
HpyCH4V	TGCA	4 cut(s)	147, 170, 208, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	395
KspI	CCGCGG	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	165, 343
Lsp1109I	GCAGC	3 cut(s)	131, 159, 337
LweI	GCATC	3 cut(s)	279, 362, 368
MaeI	CTAG	1 cut(s)	315
MboII	GAAGA	1 cut(s)	254
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	2 cut(s)	58, 171
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	23, 216
MseI	TTAA	2 cut(s)	57, 258
MspA1I	CMGCKG	2 cut(s)	196, 286
MspR9I	CCNGG	2 cut(s)	277, 324
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	277, 324
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	2 cut(s)	312, 345
NmeAIII	GCCGAG	1 cut(s)	328
PkrI	GCNGC	3 cut(s)	146, 149, 352
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	275, 322
PspGI	CCWGG	2 cut(s)	275, 322
PspN4I	GGNNCC	2 cut(s)	312, 345
PspPI	GGNCC	2 cut(s)	10, 371
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	57, 258
SatI	GCNGC	3 cut(s)	145, 148, 351
Sau96I	GGNCC	2 cut(s)	10, 371
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	277, 324
SetI	ASST	4 cut(s)	15, 79, 162, 288
SfaNI	GCATC	3 cut(s)	279, 362, 368
SfcI	CTRYAG	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	197
SgrBI	CCGCGG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	10, 371
Sse9I	AATT	2 cut(s)	58, 171
SsiI	CCGC	3 cut(s)	194, 196, 357
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	275, 322
TaaI	ACNGT	2 cut(s)	73, 375
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	58, 171
Tru1I	TTAA	2 cut(s)	57, 258
Tru9I	TTAA	2 cut(s)	57, 258
TseI	GCWGC	3 cut(s)	144, 147, 350
VpaK11BI	GGWCC	2 cut(s)	10, 371
VspI	ATTAAT	1 cut(s)	57
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.