Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Reverse (-)

37264731 .. 37266068

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTGTTCAGAAATGAGGGTTGAAGTGATCGGCAAGGAAACAATTACACCATCATCTCCTACTCCTCACCACCTTACAACTTCCAACCTCTCTGTTTTTGATCAGTTATTACCAGACATGTATGTCCCTCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCACAAGGGCAATACGGTTGATCACCACTACTCATTGATTACCGAAAGATCCAAGCTTCTGAAAACTTCATTATCTGAAGCCCTCAGCTGCTTCTATCCCTTCGCAGGAAGAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACCATGGTGCGGCATTTATCCAAACCCGTGTTAACTGTCCCATATCAAAGGTTTTGGAAAAGCCCCATGATGGAATAGTAAATCAATTACTTCCAAATGGCATAGAATCAACATTTGAAAGCACCGGCTATCTCCTACTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCGGACGCCTTCACACTCGGAACATTCATCTGTAGTTGGGCAGCAATGAGCCTTGGCACTGATGTAGTGGCTTTTCCAACTATAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATTCATCAAGCCATTGCAAACTTCTGGGGAATATGTTTATGGACATTGTGTAAAAAGGAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCAAAAGCCGCCAGTGCCACCGTTCCAAATCCAACTCATGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGACGCATCAAGATCAAACTTGGGTTTTACAATGCCAGCCATGCTATTTCTAACAGCAAACATGCGGAAAGTATTGGGGCATCCCACTTTAATGGGAAATCTTTTAGGATATGTCTCTGCAGCAAAGGCACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATAATACGGGAAGGCATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGCGGAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAGATAACTATACATGTACCAATTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCGTGGGTCACTATTCCAGGTTTCCCAATCAAGAATCTATTTTTATTAATTGATACAAAAGATGGTGAAGGCATAGAAGCATTCTTGAGTTTAAAAGAAGACGACATGGCTATAATTGAAACCAATAAGGAGTTGCTTGCGTATGGATCTCTCAATCCTATTGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

445

Amino Acids

49.09

Weight (kDa)

5.96

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 434	2.3e-75	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	1116
AccII	CGCG	1 cut(s)	521
AciI	CCGC	5 cut(s)	326, 521, 750, 883, 1038
AclWI	GGATC	2 cut(s)	207, 1321
AcsI	RAATTY	2 cut(s)	605, 1007
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	157, 1114
AfeI	AGCGCT	1 cut(s)	798
AfiI	CCNNNNNNNGG	3 cut(s)	269, 325, 386
AflIII	ACRYGT	2 cut(s)	117, 1109
AgsI	TTSAA	8 cut(s)	23, 303, 434, 476, 785, 971, 1063, 1286
AhlI	ACTAGT	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	1183
AjuI	GAANNNNNNNTTGG	2 cut(s)	1134, 1166
AluBI	AGCT	3 cut(s)	220, 252, 975
AluI	AGCT	3 cut(s)	220, 252, 975
Alw26I	GTCTC	2 cut(s)	740, 937
AlwI	GGATC	2 cut(s)	207, 1321
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	252, 560, 617, 938
ApoI	RAATTY	2 cut(s)	605, 1007
AseI	ATTAAT	1 cut(s)	1214
AspLEI	GCGC	1 cut(s)	799
AsuHPI	GGTGA	3 cut(s)	59, 179, 1244
BbsI	GAAGAC	1 cut(s)	1272
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	4 cut(s)	239, 572, 629, 950
BccI	CCATC	5 cut(s)	58, 380, 1149, 1174, 1223
BciT130I	CCWGG	1 cut(s)	1185
BclI	TGATCA	2 cut(s)	100, 184
BcoDI	GTCTC	2 cut(s)	740, 937
BcuI	ACTAGT	1 cut(s)	454
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	3 cut(s)	550, 600, 936
BfoI	RGCGCY	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	1116
BisI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 939
BlsI	GCNGC	6 cut(s)	254, 328, 562, 619, 751, 940
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	1185
BmrFI	CCNGG	1 cut(s)	1185
BmsI	GCATC	5 cut(s)	629, 706, 833, 907, 949
BpiI	GAAGAC	1 cut(s)	1272
Bpu10I	CCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	722, 1273
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	319, 571
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 325, 386
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	753
Bse3DI	GCAATG	4 cut(s)	319, 570, 656, 822
BseBI	CCWGG	1 cut(s)	1185
BseDI	CCNNGG	2 cut(s)	319, 571
BseGI	GGATG	2 cut(s)	898, 1160
BseLI	CCNNNNNNNGG	3 cut(s)	269, 325, 386
BseMI	GCAATG	4 cut(s)	319, 570, 656, 822
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	753
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	239, 572, 629, 950
BsgI	GTGCAG	1 cut(s)	1144
Bsh1236I	CGCG	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	110, 339
BslI	CCNNNNNNNGG	3 cut(s)	269, 325, 386
BsmAI	GTCTC	2 cut(s)	740, 937
BsmBI	CGTCTC	1 cut(s)	740
BsmFI	GGGAC	2 cut(s)	110, 339
BsmI	GAATGC	1 cut(s)	1247
Bsp143I	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	5 cut(s)	326, 521, 750, 883, 1038
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	1 cut(s)	1116
BspPI	GGATC	2 cut(s)	207, 1321
BsrDI	GCAATG	4 cut(s)	319, 570, 656, 822
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	753
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	319, 571
BssMI	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	319, 571
Bst2UI	CCWGG	1 cut(s)	1185
Bst4CI	ACNGT	3 cut(s)	181, 353, 763
Bst6I	CTCTTC	2 cut(s)	143, 972
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	855, 1305
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	2 cut(s)	898, 1160
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	7 cut(s)	30, 103, 187, 215, 519, 833, 1316
BstMAI	GTCTC	2 cut(s)	740, 937
BstMBI	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
BstMWI	GCNNNNNNNGC	5 cut(s)	755, 821, 859, 944, 1131
BstNI	CCWGG	1 cut(s)	1185
BstNSI	RCATGY	3 cut(s)	121, 883, 1113
BstSCI	CCNGG	1 cut(s)	1183
BstSFI	CTRYAG	3 cut(s)	550, 600, 936
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	4 cut(s)	239, 572, 629, 950
BstV2I	GAAGAC	1 cut(s)	1272
BstX2I	RGATCY	2 cut(s)	212, 1313
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	2 cut(s)	212, 1313
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	898, 1160
BtsIMutI	CAGTG	2 cut(s)	576, 760
BveI	ACCTGC	1 cut(s)	1116
Cac8I	GCNNGC	2 cut(s)	855, 1305
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	799
Cfr10I	RCCGGY	1 cut(s)	440
CseI	GACGC	2 cut(s)	533, 830
Csp6I	GTAC	2 cut(s)	156, 1113
CviAII	CATG	9 cut(s)	118, 320, 383, 779, 859, 880, 1070, 1110, 1273
CviQI	GTAC	2 cut(s)	156, 1113
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	7 cut(s)	29, 102, 186, 214, 518, 832, 1315
DpnII	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
DraI	TTTAAA	2 cut(s)	1012, 1260
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	143, 972
EarI	CTCTTC	2 cut(s)	143, 972
Eco130I	CCWWGG	2 cut(s)	319, 571
Eco32I	GATATC	1 cut(s)	1048
Eco47III	AGCGCT	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	1183
EcoRV	GATATC	1 cut(s)	1048
EcoT14I	CCWWGG	2 cut(s)	319, 571
ErhI	CCWWGG	2 cut(s)	319, 571
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	9 cut(s)	121, 323, 386, 782, 862, 883, 1073, 1113, 1276
FaqI	GGGAC	2 cut(s)	110, 339
FatI	CATG	9 cut(s)	117, 319, 382, 778, 858, 879, 1069, 1109, 1272
FbaI	TGATCA	2 cut(s)	100, 184
Fnu4HI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 939
FokI	GGATG	2 cut(s)	885, 1167
Fsp4HI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 939
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 939
HaeII	RGCGCY	1 cut(s)	800
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	2 cut(s)	533, 830
HhaI	GCGC	1 cut(s)	799
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	9 cut(s)	121, 323, 386, 782, 862, 883, 1073, 1113, 1276
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	218, 973
HinfI	GANTC	2 cut(s)	422, 1201
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	59, 179, 1244
Hpy166II	GTNNAC	3 cut(s)	349, 485, 628
Hpy188I	TCNGA	4 cut(s)	10, 225, 241, 539
Hpy188III	TCNNGA	3 cut(s)	828, 1198, 1252
Hpy8I	GTNNAC	3 cut(s)	349, 485, 628
HpyAV	CCTTC	4 cut(s)	274, 538, 989, 1229
HpyCH4III	ACNGT	3 cut(s)	181, 353, 763
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	8 cut(s)	312, 491, 617, 661, 815, 938, 962, 1125
HpyF10VI	GCNNNNNNNGC	5 cut(s)	755, 821, 859, 944, 1131
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	733
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	9 cut(s)	121, 323, 386, 782, 862, 883, 1073, 1113, 1276
HspAI	GCGC	1 cut(s)	797
Ksp22I	TGATCA	2 cut(s)	100, 184
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
LpnPI	CCDG	9 cut(s)	126, 255, 454, 654, 766, 867, 1111, 1170, 1197
Lsp1109I	GCAGC	4 cut(s)	239, 572, 629, 950
LweI	GCATC	5 cut(s)	629, 706, 833, 907, 949
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	1 cut(s)	1174
MalI	GATC	7 cut(s)	29, 102, 186, 214, 518, 832, 1315
MboI	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
MboII	GAAGA	5 cut(s)	130, 285, 959, 1085, 1277
MfeI	CAATTG	2 cut(s)	492, 1117
MflI	RGATCY	2 cut(s)	212, 1313
MluCI	AATT	9 cut(s)	42, 401, 492, 605, 1007, 1117, 1147, 1215, 1281
MmeI	TCCRAC	3 cut(s)	108, 620, 797
MnlI	CCTC	6 cut(s)	9, 75, 98, 138, 257, 730
MseI	TTAA	6 cut(s)	348, 908, 1011, 1079, 1214, 1259
MslI	CAYNNNNRTG	1 cut(s)	908
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	1185
MunI	CAATTG	2 cut(s)	492, 1117
Mva1269I	GAATGC	1 cut(s)	1247
MvaI	CCWGG	1 cut(s)	1185
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	755, 821, 859, 944, 1131
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
NlaIII	CATG	9 cut(s)	121, 323, 386, 782, 862, 883, 1073, 1113, 1276
NmuCI	GTSAC	1 cut(s)	1174
NspI	RCATGY	3 cut(s)	121, 883, 1113
PciI	ACATGT	2 cut(s)	117, 1109
PctI	GAATGC	1 cut(s)	1247
PfeI	GAWTC	2 cut(s)	422, 1201
PkrI	GCNGC	6 cut(s)	254, 328, 562, 619, 751, 940
PscI	ACATGT	2 cut(s)	117, 1109
PshBI	ATTAAT	1 cut(s)	1214
Psp6I	CCWGG	1 cut(s)	1183
PspGI	CCWGG	1 cut(s)	1183
PstI	CTGCAG	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	212, 1313
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	2 cut(s)	157, 1114
RsaNI	GTAC	2 cut(s)	156, 1113
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	6 cut(s)	348, 908, 1011, 1079, 1214, 1259
SatI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 939
Sau3AI	GATC	7 cut(s)	27, 100, 184, 212, 516, 830, 1313
ScaI	AGTACT	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	1185
SetI	ASST	9 cut(s)	75, 90, 222, 254, 369, 736, 977, 1130, 1189
SfaNI	GCATC	5 cut(s)	629, 706, 833, 907, 949
SfcI	CTRYAG	3 cut(s)	550, 600, 936
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	2 cut(s)	737, 1252
SmoI	CTYRAG	2 cut(s)	737, 1252
SpeI	ACTAGT	1 cut(s)	454
Sse9I	AATT	9 cut(s)	42, 401, 492, 605, 1007, 1117, 1147, 1215, 1281
SsiI	CCGC	5 cut(s)	326, 521, 750, 883, 1038
SspI	AATATT	2 cut(s)	279, 727
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	1183
StyI	CCWWGG	2 cut(s)	319, 571
TaaI	ACNGT	3 cut(s)	181, 353, 763
TaiI	ACGT	1 cut(s)	736
TasI	AATT	9 cut(s)	42, 401, 492, 605, 1007, 1117, 1147, 1215, 1281
TatI	WGTACW	1 cut(s)	155
TauI	GCSGC	2 cut(s)	329, 752
TfiI	GAWTC	2 cut(s)	422, 1201
Tru1I	TTAA	6 cut(s)	348, 908, 1011, 1079, 1214, 1259
Tru9I	TTAA	6 cut(s)	348, 908, 1011, 1079, 1214, 1259
TscAI	CASTG	2 cut(s)	583, 760
TseFI	GTSAC	1 cut(s)	1174
TseI	GCWGC	4 cut(s)	252, 560, 617, 938
Tsp45I	GTSAC	1 cut(s)	1174
TspDTI	ATGAA	5 cut(s)	222, 535, 637, 1086, 1155
TspRI	CASTG	2 cut(s)	583, 760
VspI	ATTAAT	1 cut(s)	1214
XapI	RAATTY	2 cut(s)	605, 1007
XceI	RCATGY	3 cut(s)	121, 883, 1113
XspI	CTAG	1 cut(s)	455
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.