Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012230

Physical Location & Seq

Genomic Coordinates Forward (+)

11206595 .. 11208158

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1144000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATAAGGAGACCCCCAATATAAAGAAGTGGATTGTTCTTTATCCGGTTTATATTAACTCGAAGAAAACTGTGGCTGAAGGGAGGCGAATCAGTGTTGCGAAAGCGTGCGAGGGTCCTACTTGTGCTGAGATTGGTGATTGCTGCAGCTATTTTAAACTCCCATTTGCAATCGAGATAGATAAGGCTTATCCACGTGATTTCATGCAAATTGGGAGAGTGAGGGTCTTGCTCAAAAAGGAAGATGGAACTCCATATAATCCAGACATTACTTCCAGGAAACAGCTGATGCTGAAAGTTGCGGAGATGGTTCCCAGACATCCTGGGAGGACTAGGAAGCAGGAGCCCGCCACATCCACATCAAGTGCTGGACCTGCCAAATCTGGGAAACATGGAAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005786 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006617 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008312 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0042886 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048500 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRP19

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

9.84

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP19	PF01922	13 - 107	7.9e-32	SRP19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48160 AT1G48160
fragaria_vesca	FvH4_4g21210 FvH4_4g21210
malus_domestica	MD13G1143900.v1.1 MD13G1144000.v1.1
prunus_persica	Prupe.8G102200_v2.0.a1
pyrus_communis	pycom13g12480
rosa_chinensis	RchiOBHm_Chr4g0426821
rosa_laevigata	RLG00000007275
rosa_multiflora	Rmu_sc0000953.1_g000012 Rmu_sc0004341.1_g000004
rosa_roxburghii	Rroxscaffold_5G00368790
rosa_rugosa	Rorug04G0215100
rosa_samantha	Rh4AG270100 Rh4BG276400 Rh4CG291200 Rh4DG273600
rosa_wichuraiana	Rw4G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AciI	CCGC	2 cut(s)	302, 348
AcuI	CTGAAG	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	384
AjnI	CCWGG	2 cut(s)	275, 322
AluBI	AGCT	2 cut(s)	150, 286
AluI	AGCT	2 cut(s)	150, 286
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	144, 147
AspS9I	GGNCC	2 cut(s)	116, 371
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	116, 371
BanII	GRGCYC	1 cut(s)	348
BbrPI	CACGTG	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	131, 159
BccI	CCATC	2 cut(s)	239, 301
BciT130I	CCWGG	2 cut(s)	277, 324
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme1390I	CCNGG	2 cut(s)	277, 324
Bme18I	GGWCC	2 cut(s)	116, 371
BmgT120I	GGNCC	2 cut(s)	116, 371
BmiI	GGNNCC	3 cut(s)	117, 312, 345
BmrFI	CCNGG	2 cut(s)	277, 324
BmsI	GCATC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	277, 324
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	2 cut(s)	319, 353
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	131, 159
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	302, 348
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	117, 312, 345
BspMAI	CTGCAG	1 cut(s)	149
BspMI	ACCTGC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	323
Bst2UI	CCWGG	2 cut(s)	277, 324
Bst4CI	ACNGT	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	109, 348
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	319, 353
BstMAI	GTCTC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	277, 324
BstSCI	CCNGG	2 cut(s)	275, 322
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	131, 159
BtsCI	GGATG	2 cut(s)	319, 353
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	109, 348
Cfr13I	GGNCC	2 cut(s)	116, 371
CviAII	CATG	2 cut(s)	205, 392
CviJI	RGCY	5 cut(s)	77, 150, 188, 286, 346
CviKI_1	RGCY	5 cut(s)	77, 150, 188, 286, 346
DdeI	CTNAG	1 cut(s)	129
DraI	TTTAAA	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	2 cut(s)	116, 371
Eco57I	CTGAAG	1 cut(s)	99
Eco72I	CACGTG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	275, 322
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	2 cut(s)	208, 395
FaiI	YATR	6 cut(s)	23, 54, 206, 256, 258, 393
FatI	CATG	2 cut(s)	204, 391
FauI	CCCGC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	145, 148
FokI	GGATG	2 cut(s)	306, 340
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	2 cut(s)	145, 148
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	208, 395
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	175, 263
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	147, 170, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	208, 395
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	131, 159
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	196
MboII	GAAGA	2 cut(s)	76, 254
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	4 cut(s)	78, 106, 216, 321
MseI	TTAA	2 cut(s)	57, 156
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	277, 324
MvaI	CCWGG	2 cut(s)	277, 324
MwoI	GCNNNNNNNGC	1 cut(s)	374
NlaIII	CATG	2 cut(s)	208, 395
NlaIV	GGNNCC	3 cut(s)	117, 312, 345
PfeI	GAWTC	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	146, 149
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	275, 322
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	275, 322
PspN4I	GGNNCC	3 cut(s)	117, 312, 345
PspPI	GGNCC	2 cut(s)	116, 371
PspPPI	RGGWCCY	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	57, 156
SatI	GCNGC	2 cut(s)	145, 148
Sau96I	GGNCC	2 cut(s)	116, 371
ScrFI	CCNGG	2 cut(s)	277, 324
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	4 cut(s)	152, 199, 288, 376
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	116, 371
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	302, 348
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	275, 322
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	62, 174
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	57, 156
Tru9I	TTAA	2 cut(s)	57, 156
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	144, 147
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	116, 371
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.